Wall clock time and date at job start Wed Apr 1 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47402 * 2 1 4 4 C 1.46897 * 110.99526 * 294.73179 * 3 2 1 5 5 C 1.50694 * 109.47653 * 294.82889 * 4 3 2 6 6 N 1.30252 * 125.62208 * 92.59416 * 5 4 3 7 7 C 1.34479 * 108.70429 * 179.97438 * 6 5 4 8 8 C 1.34332 * 107.66662 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.44531 * 179.97438 * 8 7 6 10 10 O 1.33976 * 125.61754 * 272.57833 * 5 4 3 11 11 C 1.46902 * 110.99777 * 58.68541 * 3 2 1 12 12 H 1.08997 * 109.47063 * 290.88162 * 11 3 2 13 13 C 1.53007 * 109.46699 * 170.88583 * 11 3 2 14 14 C 1.52995 * 109.47089 * 50.88438 * 11 3 2 15 15 N 1.46494 * 109.47395 * 54.23831 * 14 11 3 16 16 C 1.34771 * 120.00418 * 183.83158 * 15 14 11 17 17 O 1.21285 * 119.99683 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00539 * 179.97438 * 16 15 14 19 19 S 1.80995 * 109.47281 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00056 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99984 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00286 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99542 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00229 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47341 * 120.00027 * 24 22 20 27 27 H 1.48500 * 109.47025 * 240.00290 * 24 22 20 28 28 H 1.08999 * 109.47370 * 183.00659 * 1 2 3 29 29 H 1.09004 * 109.47251 * 303.00357 * 1 2 3 30 30 H 1.08997 * 109.47016 * 63.00531 * 1 2 3 31 31 H 1.08997 * 109.46980 * 239.99504 * 2 1 3 32 32 H 1.09006 * 109.46983 * 120.00074 * 2 1 3 33 33 H 1.09005 * 109.46898 * 174.82508 * 4 3 2 34 34 H 1.08997 * 109.47276 * 54.83155 * 4 3 2 35 35 H 1.07999 * 126.16478 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47087 * 270.00173 * 9 8 7 37 37 H 1.09007 * 109.46567 * 29.99938 * 9 8 7 38 38 H 1.08997 * 109.47232 * 149.99867 * 9 8 7 39 39 H 1.08997 * 109.47020 * 299.99606 * 13 11 3 40 40 H 1.08996 * 109.46996 * 60.00151 * 13 11 3 41 41 H 1.08997 * 109.46748 * 179.97438 * 13 11 3 42 42 H 1.09005 * 109.47086 * 174.23615 * 14 11 3 43 43 H 1.08999 * 109.47307 * 294.23364 * 14 11 3 44 44 H 0.97003 * 119.99904 * 3.82904 * 15 14 11 45 45 H 1.08997 * 109.46921 * 299.99782 * 18 16 15 46 46 H 1.09001 * 109.46772 * 59.99925 * 18 16 15 47 47 H 0.97001 * 119.99806 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6542 2.0725 -1.2456 5 6 2.3633 1.4219 -2.4053 6 7 1.8850 0.4630 -3.1457 7 6 2.7989 0.1413 -4.0783 8 6 3.8671 0.9346 -3.8929 9 6 5.1368 0.9305 -4.7046 10 8 3.5897 1.7347 -2.8448 11 6 1.5232 2.1189 1.1717 12 1 0.4487 2.2742 1.0746 13 6 2.2283 3.4739 1.2611 14 6 1.8092 1.3104 2.4387 15 7 3.2361 0.9838 2.4979 16 6 3.7088 0.2066 3.4923 17 8 2.9530 -0.2221 4.3384 18 6 5.1765 -0.1298 3.5529 19 16 5.4958 -1.1803 4.9918 20 6 7.2342 -1.4121 4.8218 21 1 7.7623 -0.9533 3.9989 22 6 7.9253 -2.1835 5.7459 23 7 7.2819 -2.7415 6.7496 24 14 9.7683 -2.4286 5.5660 25 1 10.2494 -1.7016 4.3637 26 1 10.4576 -1.9029 6.7716 27 1 10.0630 -3.8766 5.4191 28 1 -0.3634 -1.0262 0.0539 29 1 -0.3634 0.5598 0.8619 30 1 -0.3633 0.4665 -0.9157 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.9477 3.1203 -1.1819 34 1 0.5766 2.0055 -1.3949 35 1 2.6932 -0.6179 -4.8390 36 1 5.8487 0.2339 -4.2619 37 1 4.9139 0.6222 -5.7261 38 1 5.5659 1.9324 -4.7129 39 1 3.3028 3.3185 1.3582 40 1 2.0245 4.0498 0.3584 41 1 1.8596 4.0186 2.1302 42 1 1.5344 1.8983 3.3146 43 1 1.2261 0.3897 2.4216 44 1 3.8406 1.3270 1.8214 45 1 5.4657 -0.6590 2.6449 46 1 5.7566 0.7890 3.6384 47 1 7.7649 -3.2802 7.3956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151965331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:57 Heat of formation + Delta-G solvation = -33.958129 kcal Electronic energy + Delta-G solvation = -27577.261574 eV Core-core repulsion = 23694.320646 eV Total energy + Delta-G solvation = -3882.940928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -44.29545 -40.97009 -39.62491 -35.94468 -35.52206 -34.58483 -33.61396 -32.94658 -31.61064 -30.46507 -28.42821 -27.74630 -27.09946 -25.82606 -23.94252 -23.17544 -21.99430 -21.77545 -20.42902 -19.80472 -18.14427 -17.97716 -17.73709 -17.32975 -16.94911 -16.87726 -16.55714 -16.17199 -15.82696 -15.73925 -15.29933 -15.06410 -14.64838 -14.38280 -14.23305 -14.21360 -13.93287 -13.79350 -13.66137 -13.35846 -13.23094 -13.16226 -13.12629 -12.93975 -12.90585 -12.61142 -12.56960 -12.39289 -12.26833 -11.76632 -11.67207 -11.64596 -11.51961 -11.15738 -10.92659 -10.27071 -10.01873 -9.67966 -9.39061 -8.65931 -8.34746 -6.12433 0.44025 1.27872 1.41192 1.47515 1.58775 1.61547 1.66941 1.74660 2.26745 2.35900 2.79426 2.99297 3.17865 3.34294 3.63346 3.84756 3.95541 4.03533 4.07017 4.08521 4.23056 4.27552 4.28716 4.31505 4.33267 4.49750 4.51588 4.55961 4.66944 4.68512 4.70623 4.76411 4.86532 4.96749 5.04313 5.05484 5.08790 5.20432 5.26327 5.35361 5.41660 5.41967 5.49587 5.86672 5.95596 6.20115 6.58355 6.75662 7.06595 7.30615 8.74799 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.002643 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.941643 B =10590.953333 C =12285.045839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 N -0.533 5.533 4 C 0.146 3.854 5 C 0.189 3.811 6 N -0.499 5.499 7 C -0.067 4.067 8 C -0.049 4.049 9 C -0.068 4.068 10 O -0.208 6.208 11 C 0.079 3.921 12 H 0.087 0.913 13 C -0.148 4.148 14 C 0.124 3.876 15 N -0.699 5.699 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.148 6.148 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.201 0.799 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.415 0.585 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 14.641 -25.430 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.079 4.079 3 N -0.259 5.259 4 C 0.018 3.982 5 C -0.018 4.018 6 N -0.229 5.229 7 C -0.205 4.205 8 C -0.103 4.103 9 C -0.124 4.124 10 O -0.095 6.095 11 C -0.028 4.028 12 H 0.104 0.896 13 C -0.205 4.205 14 C 0.000 4.000 15 N -0.353 5.353 16 C 0.318 3.682 17 O -0.447 6.447 18 C -0.280 4.280 19 S 0.079 5.921 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.217 0.783 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.253 0.747 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.890 13.628 -23.766 29.865 hybrid contribution 1.801 0.103 -1.147 2.138 sum -10.088 13.731 -24.914 30.183 Atomic orbital electron populations 1.22307 0.96405 1.02897 1.02414 1.22107 0.94389 0.89541 1.01870 1.62150 1.60317 1.02303 1.01169 1.20593 0.97192 0.98264 0.82166 1.26368 0.81391 0.95366 0.98707 1.70413 1.32475 1.13182 1.06877 1.23481 0.90751 1.04287 1.01936 1.24208 1.01235 0.93953 0.90857 1.20471 0.89023 1.04781 0.98167 1.84406 1.33507 1.52174 1.39386 1.21931 0.99781 0.93912 0.87217 0.89553 1.21936 1.01097 0.94063 1.03402 1.21536 0.81265 0.99346 0.97897 1.45632 1.10255 1.51261 1.28146 1.19978 0.89081 0.77916 0.81197 1.90684 1.59486 1.53891 1.40662 1.23349 0.96309 1.04469 1.03864 1.85520 1.10366 1.63693 1.32542 1.23235 0.93113 1.37452 1.15606 0.90131 1.26130 1.05016 0.94154 0.93854 1.70191 1.38508 1.32035 1.14030 0.84902 0.75948 0.78293 0.78779 1.18115 1.19789 1.19892 0.92393 0.91400 0.91597 0.91977 0.91771 0.85515 0.88880 0.78256 0.89130 0.86750 0.89673 0.92310 0.90337 0.90698 0.90859 0.92351 0.74705 0.88030 0.87489 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.03 71.98 0.65 -2.36 16 2 C 0.05 0.99 5.33 86.30 0.46 1.45 16 3 N -0.53 -8.58 4.04 -875.53 -3.53 -12.12 16 4 C 0.15 1.99 5.27 85.56 0.45 2.44 16 5 C 0.19 3.72 6.89 88.34 0.61 4.33 16 6 N -0.50 -10.96 10.53 -303.83 -3.20 -14.16 16 7 C -0.07 -1.23 11.80 83.39 0.98 -0.24 16 8 C -0.05 -0.84 7.39 24.79 0.18 -0.66 16 9 C -0.07 -0.59 10.43 71.24 0.74 0.15 16 10 O -0.21 -4.31 10.78 -3.80 -0.04 -4.35 16 11 C 0.08 1.07 1.69 44.92 0.08 1.15 16 12 H 0.09 0.87 6.73 -2.39 -0.02 0.86 16 13 C -0.15 -1.57 9.00 71.98 0.65 -0.93 16 14 C 0.12 2.63 4.43 86.38 0.38 3.01 16 15 N -0.70 -18.27 4.80 -463.08 -2.22 -20.49 16 16 C 0.53 20.16 7.85 87.66 0.69 20.84 16 17 O -0.57 -26.63 15.86 -3.05 -0.05 -26.68 16 18 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.79 9.50 67.95 0.65 -31.15 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 24 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.98 5.95 -2.39 -0.01 0.97 16 30 H 0.07 1.01 6.57 -2.39 -0.02 0.99 16 31 H 0.06 1.49 6.52 -2.39 -0.02 1.48 16 32 H 0.06 1.59 6.15 -2.38 -0.01 1.58 16 33 H 0.13 1.17 6.07 -2.38 -0.01 1.15 16 34 H 0.09 1.09 6.28 -2.39 -0.02 1.07 16 35 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.77 7.15 -2.39 -0.02 0.75 16 40 H 0.08 0.55 6.35 -2.39 -0.02 0.54 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 43 H 0.06 1.43 6.13 -2.39 -0.01 1.42 16 44 H 0.42 9.23 7.29 -92.71 -0.68 8.55 16 45 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 46 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -80.84 391.43 -0.15 -80.99 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.32 Total: 22.10 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 7.42 Total: -5.61 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -8.67 Total: -103.06 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.09 Total: -31.03 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -80.84 -0.15 -80.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151965331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -80.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds