Wall clock time and date at job start Wed Apr 1 2020 00:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47359 * 2 1 4 4 C 1.46897 * 111.00527 * 279.70159 * 3 2 1 5 5 C 1.50704 * 109.46827 * 77.98514 * 4 3 2 6 6 C 1.35454 * 126.77550 * 82.13219 * 5 4 3 7 7 C 1.41376 * 103.98673 * 179.90710 * 6 5 4 8 8 C 1.50701 * 126.80544 * 180.09783 * 7 6 5 9 9 N 1.30178 * 106.39611 * 0.35942 * 7 6 5 10 10 O 1.20922 * 111.60238 * 359.76651 * 9 7 6 11 11 C 1.46904 * 110.99902 * 155.74878 * 3 2 1 12 12 H 1.09004 * 109.47223 * 173.17290 * 11 3 2 13 13 C 1.52992 * 109.47347 * 53.16828 * 11 3 2 14 14 C 1.53004 * 109.46757 * 293.16561 * 11 3 2 15 15 N 1.46497 * 109.47568 * 299.39955 * 14 11 3 16 16 C 1.34771 * 120.00235 * 180.02562 * 15 14 11 17 17 O 1.21286 * 119.99944 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00334 * 180.02562 * 16 15 14 19 19 S 1.80994 * 109.47123 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99944 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00154 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99953 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00015 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46974 * 59.99567 * 24 22 20 26 26 H 1.48500 * 109.47168 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46872 * 299.99862 * 24 22 20 28 28 H 1.08999 * 109.47138 * 194.40687 * 1 2 3 29 29 H 1.09000 * 109.47099 * 314.41231 * 1 2 3 30 30 H 1.09008 * 109.47102 * 74.40897 * 1 2 3 31 31 H 1.09009 * 109.47001 * 239.99955 * 2 1 3 32 32 H 1.08999 * 109.46940 * 120.00493 * 2 1 3 33 33 H 1.09000 * 109.46846 * 317.99122 * 4 3 2 34 34 H 1.08998 * 109.47364 * 197.98839 * 4 3 2 35 35 H 1.07997 * 128.00617 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.46750 * 270.29059 * 8 7 6 37 37 H 1.08999 * 109.46625 * 30.28466 * 8 7 6 38 38 H 1.08997 * 109.47368 * 150.29021 * 8 7 6 39 39 H 1.08997 * 109.47147 * 60.00088 * 13 11 3 40 40 H 1.09000 * 109.47308 * 180.02562 * 13 11 3 41 41 H 1.08995 * 109.47202 * 300.00173 * 13 11 3 42 42 H 1.08997 * 109.46904 * 59.40108 * 14 11 3 43 43 H 1.09004 * 109.46894 * 179.39598 * 14 11 3 44 44 H 0.97001 * 119.99798 * 0.02562 * 15 14 11 45 45 H 1.09002 * 109.46657 * 299.99810 * 18 16 15 46 46 H 1.08995 * 109.47152 * 59.99215 * 18 16 15 47 47 H 0.96996 * 119.99827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.9774 1.9584 -1.3517 5 6 0.5625 2.3568 -1.6842 6 6 -0.0645 3.5011 -1.3207 7 6 -1.3553 3.3773 -1.8839 8 6 -2.4801 4.3760 -1.7918 9 7 -1.3816 2.2272 -2.4931 10 8 -0.3258 1.6462 -2.3932 11 6 3.3741 1.4644 0.5633 12 1 3.7597 2.4766 0.4411 13 6 4.2886 0.4786 -0.1665 14 6 3.3288 1.1122 2.0516 15 7 2.4645 2.0648 2.7528 16 6 2.2742 1.9500 4.0821 17 8 2.8182 1.0578 4.6978 18 6 1.3846 2.9296 4.8034 19 16 1.3313 2.5130 6.5639 20 6 0.2546 3.7806 7.1458 21 1 -0.1485 4.5060 6.4547 22 6 -0.0764 3.8461 8.4922 23 7 0.4137 2.9611 9.3342 24 14 -1.2185 5.1895 9.1089 25 1 -2.5303 5.0779 8.4219 26 1 -1.4130 5.0402 10.5735 27 1 -0.6206 6.5181 8.8213 28 1 -0.3633 -0.9953 0.2557 29 1 -0.3633 0.7192 0.7341 30 1 -0.3634 0.2762 -0.9899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.3249 1.2175 -2.0717 34 1 2.6217 2.8365 -1.3943 35 1 0.3308 4.3195 -0.7374 36 1 -3.0803 4.1666 -0.9063 37 1 -2.0675 5.3824 -1.7214 38 1 -3.1061 4.3012 -2.6810 39 1 4.3209 0.7295 -1.2267 40 1 5.2935 0.5373 0.2518 41 1 3.9031 -0.5335 -0.0442 42 1 2.9333 0.1041 2.1745 43 1 4.3354 1.1607 2.4672 44 1 2.0292 2.7782 2.2604 45 1 1.7796 3.9380 4.6800 46 1 0.3782 2.8804 4.3880 47 1 0.1827 3.0071 10.2752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151965718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:14 Heat of formation + Delta-G solvation = 27.958070 kcal Electronic energy + Delta-G solvation = -27622.142578 eV Core-core repulsion = 23741.886537 eV Total energy + Delta-G solvation = -3880.256040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.16000 -39.75923 -38.52524 -35.01073 -34.69630 -32.87320 -32.40217 -32.03721 -29.99012 -29.15378 -28.90023 -26.51765 -25.64251 -25.23753 -23.44967 -23.02309 -20.51672 -20.19519 -19.96281 -17.95805 -17.77726 -17.50835 -16.63886 -16.26423 -16.13933 -15.32153 -15.23522 -14.84523 -14.78115 -14.53220 -13.98478 -13.79645 -13.64224 -13.49874 -13.29100 -13.23665 -12.96836 -12.87223 -12.83874 -12.64408 -12.48995 -12.30489 -12.00209 -11.81907 -11.61925 -11.26169 -11.14635 -11.02185 -11.01746 -10.94789 -10.74545 -10.15728 -9.79457 -9.59092 -9.34036 -9.03701 -8.85626 -8.73453 -8.19966 -6.46361 -6.18975 -3.89028 1.19941 2.01708 2.77186 3.08804 3.18951 3.25064 3.29209 3.33379 3.52741 3.82498 3.97851 4.09613 4.23326 4.38381 4.56974 4.65692 4.76337 4.85294 4.88751 4.94051 5.09720 5.13633 5.16003 5.20410 5.21958 5.25816 5.26749 5.35266 5.36075 5.50884 5.53144 5.54916 5.60030 5.68054 5.73878 5.84134 5.89008 5.92649 5.95951 6.15177 6.20098 6.55522 6.59212 6.76608 7.61820 7.85606 8.06550 8.37679 8.71676 9.26204 10.88437 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.002742 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.992289 B =10208.902813 C =12224.789036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.134 3.866 5 C -0.019 4.019 6 C -0.210 4.210 7 C 0.015 3.985 8 C -0.077 4.077 9 N -0.368 5.368 10 O 0.096 5.904 11 C 0.070 3.930 12 H 0.094 0.906 13 C -0.185 4.185 14 C 0.131 3.869 15 N -0.726 5.726 16 C 0.531 3.469 17 O -0.523 6.523 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.402 0.598 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -0.103 -27.319 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.080 4.080 3 N -0.252 5.252 4 C 0.005 3.995 5 C -0.083 4.083 6 C -0.232 4.232 7 C -0.143 4.143 8 C -0.134 4.134 9 N -0.073 5.073 10 O 0.031 5.969 11 C -0.038 4.038 12 H 0.112 0.888 13 C -0.244 4.244 14 C 0.006 3.994 15 N -0.381 5.381 16 C 0.317 3.683 17 O -0.398 6.398 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.188 0.812 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.237 0.763 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.337 -2.054 -26.498 26.786 hybrid contribution -0.694 2.319 -0.549 2.482 sum 2.643 0.264 -27.047 27.177 Atomic orbital electron populations 1.21975 0.94739 1.02094 1.02691 1.22255 0.96449 0.87814 1.01436 1.62095 1.22907 1.20535 1.19633 1.20497 0.87261 1.01183 0.90532 1.24195 0.94958 0.92090 0.97010 1.22379 0.93818 1.01049 1.05987 1.23617 0.97328 0.94790 0.98590 1.20174 0.94183 0.95613 1.03457 1.73841 1.02961 1.08893 1.21651 1.84808 1.16059 1.40434 1.55627 1.22061 0.87126 1.00541 0.94100 0.88826 1.22431 1.00915 1.00389 1.00659 1.21316 0.95229 0.93758 0.89057 1.45795 1.50938 1.33369 1.07965 1.20275 0.81212 0.85416 0.81422 1.90696 1.48569 1.34283 1.66291 1.23504 1.01064 1.00794 1.04837 1.85373 1.63398 1.41597 0.93082 1.22835 1.33356 1.15956 0.96211 0.91025 1.24984 0.96285 0.96603 0.95681 1.70008 1.42444 1.34120 1.03780 0.86239 0.80502 0.81154 0.77699 1.19954 1.20831 1.19942 0.92335 0.91744 0.92265 0.93923 0.90075 0.91895 0.87559 0.81158 0.89999 0.89998 0.90745 0.92069 0.91214 0.91674 0.91539 0.91052 0.76317 0.89410 0.89357 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.25 37.16 0.34 -1.23 16 2 C 0.05 0.39 4.22 -3.83 -0.02 0.38 16 3 N -0.53 -3.82 4.05 -228.08 -0.92 -4.74 16 4 C 0.13 0.79 4.89 -4.98 -0.02 0.77 16 5 C -0.02 -0.16 5.48 -35.30 -0.19 -0.35 16 6 C -0.21 -1.79 11.06 -39.38 -0.44 -2.23 16 7 C 0.02 0.15 7.33 -82.10 -0.60 -0.45 16 8 C -0.08 -0.55 10.47 36.01 0.38 -0.18 16 9 N -0.37 -4.27 12.07 33.42 0.40 -3.87 16 10 O 0.10 1.01 8.79 17.18 0.15 1.16 16 11 C 0.07 0.47 2.35 -67.71 -0.16 0.31 16 12 H 0.09 0.53 7.79 -51.93 -0.40 0.12 16 13 C -0.18 -0.99 8.59 37.15 0.32 -0.67 16 14 C 0.13 1.38 5.01 -4.04 -0.02 1.36 16 15 N -0.73 -9.38 5.43 -60.29 -0.33 -9.71 16 16 C 0.53 9.84 7.85 -10.99 -0.09 9.75 16 17 O -0.52 -11.85 15.86 5.55 0.09 -11.76 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.61 4.72 -51.92 -0.24 0.37 16 31 H 0.04 0.30 7.20 -51.92 -0.37 -0.07 16 32 H 0.08 0.74 5.68 -51.93 -0.29 0.45 16 33 H 0.06 0.32 7.20 -51.93 -0.37 -0.05 16 34 H 0.11 0.43 7.68 -51.93 -0.40 0.03 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.26 7.26 -51.93 -0.38 -0.11 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 6.74 -51.93 -0.35 0.03 16 42 H 0.07 0.79 6.25 -51.93 -0.32 0.46 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.40 4.34 8.33 -40.82 -0.34 4.00 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -35.46 394.81 -8.49 -43.96 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.25 Total: 0.44 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.08 Total: -8.41 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.11 Total: -43.90 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.24 Total: -10.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.46 -8.49 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151965718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.914 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds