Wall clock time and date at job start Wed Apr 1 2020 00:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47359 * 2 1 4 4 C 1.46897 * 111.00527 * 279.70159 * 3 2 1 5 5 C 1.50704 * 109.46827 * 77.98514 * 4 3 2 6 6 C 1.35454 * 126.77550 * 82.13219 * 5 4 3 7 7 C 1.41376 * 103.98673 * 179.90710 * 6 5 4 8 8 C 1.50701 * 126.80544 * 180.09783 * 7 6 5 9 9 N 1.30178 * 106.39611 * 0.35942 * 7 6 5 10 10 O 1.20922 * 111.60238 * 359.76651 * 9 7 6 11 11 C 1.46904 * 110.99902 * 155.74878 * 3 2 1 12 12 H 1.09004 * 109.47223 * 173.17290 * 11 3 2 13 13 C 1.52992 * 109.47347 * 53.16828 * 11 3 2 14 14 C 1.53004 * 109.46757 * 293.16561 * 11 3 2 15 15 N 1.46497 * 109.47568 * 299.39955 * 14 11 3 16 16 C 1.34771 * 120.00235 * 180.02562 * 15 14 11 17 17 O 1.21286 * 119.99944 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00334 * 180.02562 * 16 15 14 19 19 S 1.80994 * 109.47123 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99944 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00154 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99953 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00015 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46974 * 59.99567 * 24 22 20 26 26 H 1.48500 * 109.47168 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46872 * 299.99862 * 24 22 20 28 28 H 1.08999 * 109.47138 * 194.40687 * 1 2 3 29 29 H 1.09000 * 109.47099 * 314.41231 * 1 2 3 30 30 H 1.09008 * 109.47102 * 74.40897 * 1 2 3 31 31 H 1.09009 * 109.47001 * 239.99955 * 2 1 3 32 32 H 1.08999 * 109.46940 * 120.00493 * 2 1 3 33 33 H 1.09000 * 109.46846 * 317.99122 * 4 3 2 34 34 H 1.08998 * 109.47364 * 197.98839 * 4 3 2 35 35 H 1.07997 * 128.00617 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.46750 * 270.29059 * 8 7 6 37 37 H 1.08999 * 109.46625 * 30.28466 * 8 7 6 38 38 H 1.08997 * 109.47368 * 150.29021 * 8 7 6 39 39 H 1.08997 * 109.47147 * 60.00088 * 13 11 3 40 40 H 1.09000 * 109.47308 * 180.02562 * 13 11 3 41 41 H 1.08995 * 109.47202 * 300.00173 * 13 11 3 42 42 H 1.08997 * 109.46904 * 59.40108 * 14 11 3 43 43 H 1.09004 * 109.46894 * 179.39598 * 14 11 3 44 44 H 0.97001 * 119.99798 * 0.02562 * 15 14 11 45 45 H 1.09002 * 109.46657 * 299.99810 * 18 16 15 46 46 H 1.08995 * 109.47152 * 59.99215 * 18 16 15 47 47 H 0.96996 * 119.99827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.9774 1.9584 -1.3517 5 6 0.5625 2.3568 -1.6842 6 6 -0.0645 3.5011 -1.3207 7 6 -1.3553 3.3773 -1.8839 8 6 -2.4801 4.3760 -1.7918 9 7 -1.3816 2.2272 -2.4931 10 8 -0.3258 1.6462 -2.3932 11 6 3.3741 1.4644 0.5633 12 1 3.7597 2.4766 0.4411 13 6 4.2886 0.4786 -0.1665 14 6 3.3288 1.1122 2.0516 15 7 2.4645 2.0648 2.7528 16 6 2.2742 1.9500 4.0821 17 8 2.8182 1.0578 4.6978 18 6 1.3846 2.9296 4.8034 19 16 1.3313 2.5130 6.5639 20 6 0.2546 3.7806 7.1458 21 1 -0.1485 4.5060 6.4547 22 6 -0.0764 3.8461 8.4922 23 7 0.4137 2.9611 9.3342 24 14 -1.2185 5.1895 9.1089 25 1 -2.5303 5.0779 8.4219 26 1 -1.4130 5.0402 10.5735 27 1 -0.6206 6.5181 8.8213 28 1 -0.3633 -0.9953 0.2557 29 1 -0.3633 0.7192 0.7341 30 1 -0.3634 0.2762 -0.9899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.3249 1.2175 -2.0717 34 1 2.6217 2.8365 -1.3943 35 1 0.3308 4.3195 -0.7374 36 1 -3.0803 4.1666 -0.9063 37 1 -2.0675 5.3824 -1.7214 38 1 -3.1061 4.3012 -2.6810 39 1 4.3209 0.7295 -1.2267 40 1 5.2935 0.5373 0.2518 41 1 3.9031 -0.5335 -0.0442 42 1 2.9333 0.1041 2.1745 43 1 4.3354 1.1607 2.4672 44 1 2.0292 2.7782 2.2604 45 1 1.7796 3.9380 4.6800 46 1 0.3782 2.8804 4.3880 47 1 0.1827 3.0071 10.2752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151965718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:10 Heat of formation + Delta-G solvation = 2.771865 kcal Electronic energy + Delta-G solvation = -27623.234733 eV Core-core repulsion = 23741.886537 eV Total energy + Delta-G solvation = -3881.348196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.86022 -40.77284 -39.58818 -35.76841 -35.64567 -34.56978 -33.71079 -32.78938 -31.12070 -30.14766 -29.51032 -27.72204 -27.11496 -26.23677 -24.14528 -23.72602 -21.61184 -21.18783 -20.60385 -19.75196 -18.63923 -18.23677 -17.67503 -17.35917 -17.25471 -16.86427 -16.23631 -16.14587 -15.90613 -15.69617 -15.15813 -14.69638 -14.47267 -14.36878 -14.21930 -14.12273 -14.02898 -13.80295 -13.67272 -13.38306 -13.25110 -13.15093 -13.10551 -12.96272 -12.84984 -12.70203 -12.61231 -12.34788 -11.90489 -11.77599 -11.71949 -11.64458 -11.11507 -10.89129 -10.82032 -10.26851 -10.25401 -9.96875 -9.39710 -8.64340 -8.33015 -6.10767 0.54804 1.29322 1.35155 1.44690 1.48646 1.58970 1.70472 2.19330 2.28682 2.40034 2.95076 3.00918 3.36067 3.36879 3.54347 3.73256 3.98963 4.06426 4.11962 4.19604 4.28814 4.29609 4.34623 4.38846 4.49479 4.54659 4.59789 4.64295 4.65160 4.68182 4.69411 4.75209 4.87388 4.90729 4.97216 5.01125 5.06943 5.12260 5.29782 5.31134 5.34715 5.42868 5.55494 5.99762 6.03371 6.21080 6.64353 7.08110 7.35807 7.39451 8.76001 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.002742 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.992289 B =10208.902813 C =12224.789036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 N -0.535 5.535 4 C 0.136 3.864 5 C -0.017 4.017 6 C -0.217 4.217 7 C 0.002 3.998 8 C -0.077 4.077 9 N -0.402 5.402 10 O 0.082 5.918 11 C 0.083 3.917 12 H 0.118 0.882 13 C -0.181 4.181 14 C 0.127 3.873 15 N -0.698 5.698 16 C 0.531 3.469 17 O -0.572 6.572 18 C -0.127 4.127 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.997 3.003 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.260 1.260 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.191 0.809 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.417 0.583 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 2.021 -29.334 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 N -0.260 5.260 4 C 0.008 3.992 5 C -0.081 4.081 6 C -0.239 4.239 7 C -0.156 4.156 8 C -0.134 4.134 9 N -0.111 5.111 10 O 0.019 5.981 11 C -0.024 4.024 12 H 0.136 0.864 13 C -0.240 4.240 14 C 0.003 3.997 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.451 6.451 18 C -0.278 4.278 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.185 1.185 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.209 0.791 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.754 0.084 -28.582 28.828 hybrid contribution -0.786 1.621 -0.045 1.802 sum 2.967 1.705 -28.628 28.832 Atomic orbital electron populations 1.21914 0.96291 1.01163 1.01652 1.22156 0.94983 0.88756 1.01628 1.61977 1.23333 1.19822 1.20902 1.20694 0.86107 1.02691 0.89758 1.24700 0.95568 0.91781 0.96062 1.22694 0.93282 1.01779 1.06103 1.24142 0.98622 0.94671 0.98152 1.20273 0.93687 0.96083 1.03405 1.73835 1.03889 1.10010 1.23362 1.84760 1.16231 1.40871 1.56237 1.21977 0.87158 1.02224 0.91087 0.86438 1.22402 1.00541 0.99483 1.01586 1.21531 0.94187 0.92464 0.91515 1.45556 1.49989 1.33584 1.05979 1.20005 0.80784 0.84498 0.83025 1.90685 1.50601 1.36085 1.67709 1.23343 1.02668 1.02288 0.99546 1.85548 1.63964 1.43078 0.99891 1.23180 1.33376 1.16004 0.96934 0.89988 1.26122 0.97940 0.99230 0.95818 1.70178 1.44119 1.36343 1.04178 0.85021 0.78182 0.77846 0.77061 1.18771 1.20415 1.18481 0.92678 0.93976 0.92578 0.92346 0.91226 0.90512 0.84667 0.79149 0.90042 0.87982 0.90747 0.90089 0.90847 0.92435 0.92967 0.91300 0.74590 0.87288 0.87936 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.25 71.98 0.67 -2.33 16 2 C 0.05 0.78 4.22 86.30 0.36 1.15 16 3 N -0.54 -6.22 4.05 -875.52 -3.55 -9.76 16 4 C 0.14 1.11 4.89 85.56 0.42 1.53 16 5 C -0.02 -0.25 5.48 25.04 0.14 -0.11 16 6 C -0.22 -3.22 11.06 22.40 0.25 -2.97 16 7 C 0.00 0.04 7.33 43.58 0.32 0.36 16 8 C -0.08 -1.03 10.47 71.24 0.75 -0.28 16 9 N -0.40 -9.24 12.07 -49.55 -0.60 -9.84 16 10 O 0.08 1.66 8.79 71.64 0.63 2.29 16 11 C 0.08 0.84 2.35 44.91 0.11 0.94 16 12 H 0.12 0.73 7.79 -2.38 -0.02 0.71 16 13 C -0.18 -1.33 8.59 71.98 0.62 -0.71 16 14 C 0.13 2.45 5.01 86.38 0.43 2.89 16 15 N -0.70 -16.72 5.43 -463.05 -2.52 -19.24 16 16 C 0.53 19.43 7.85 87.66 0.69 20.12 16 17 O -0.57 -26.41 15.86 -3.05 -0.05 -26.46 16 18 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 19 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 20 C -0.55 -31.44 9.50 67.96 0.65 -30.80 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 24 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.14 4.72 -2.38 -0.01 1.13 16 31 H 0.06 0.70 7.20 -2.38 -0.02 0.68 16 32 H 0.07 1.22 5.68 -2.39 -0.01 1.21 16 33 H 0.08 0.48 7.20 -2.39 -0.02 0.46 16 34 H 0.14 0.39 7.68 -2.39 -0.02 0.37 16 35 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.33 7.26 -2.39 -0.02 0.31 16 40 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.54 6.74 -2.39 -0.02 0.52 16 42 H 0.05 1.21 6.25 -2.39 -0.01 1.19 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.42 7.71 8.33 -92.71 -0.77 6.93 16 45 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 46 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -80.76 394.81 1.58 -79.18 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.21 Total: 17.49 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 6.29 Total: -13.62 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -6.37 Total: -94.91 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.58 Total: -24.17 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -80.76 1.58 -79.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151965718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.952 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds