Wall clock time and date at job start Wed Apr 1 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.36935 * 120.00364 * 275.73337 * 3 2 1 5 5 H 1.08000 * 119.99499 * 33.26961 * 4 3 2 6 6 C 1.38814 * 120.00114 * 213.26905 * 4 3 2 7 7 N 1.31618 * 119.99810 * 17.26958 * 6 4 3 8 8 Si 1.86795 * 120.00078 * 197.27038 * 6 4 3 9 9 H 1.48501 * 109.47111 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47296 * 120.00060 * 8 6 4 11 11 H 1.48496 * 109.47121 * 240.00404 * 8 6 4 12 12 C 1.46504 * 119.99551 * 95.73545 * 3 2 1 13 13 H 1.08999 * 109.47184 * 180.08574 * 12 3 2 14 14 C 1.53001 * 109.47651 * 60.08253 * 12 3 2 15 15 C 1.53002 * 109.47061 * 300.08087 * 12 3 2 16 16 N 1.46499 * 109.47504 * 305.00434 * 15 12 3 17 17 C 1.34771 * 120.00473 * 179.97438 * 16 15 12 18 18 O 1.21631 * 119.99730 * 359.97438 * 17 16 15 19 19 C 1.47267 * 120.00324 * 180.02562 * 17 16 15 20 20 C 1.35204 * 123.14192 * 180.02562 * 19 17 16 21 21 S 1.70950 * 108.82742 * 179.71584 * 20 19 17 22 22 C 1.70771 * 91.12375 * 0.33801 * 21 20 19 23 23 C 1.50707 * 124.71347 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46626 * 164.70108 * 23 22 21 25 25 C 1.53002 * 109.46948 * 284.69478 * 23 22 21 26 26 O 1.42894 * 109.47288 * 44.69719 * 23 22 21 27 27 C 1.42899 * 113.99813 * 149.99580 * 26 23 22 28 28 N 1.28643 * 110.56446 * 359.65332 * 22 21 20 29 29 H 1.09001 * 109.47044 * 59.99546 * 1 2 3 30 30 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47086 * 299.99544 * 1 2 3 32 32 H 1.09003 * 109.47318 * 240.00403 * 2 1 3 33 33 H 1.09006 * 109.47336 * 120.00096 * 2 1 3 34 34 H 0.96998 * 119.99976 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.46982 * 179.97438 * 14 12 3 36 36 H 1.08999 * 109.47089 * 300.00379 * 14 12 3 37 37 H 1.09003 * 109.46482 * 59.99586 * 14 12 3 38 38 H 1.08999 * 109.47216 * 185.00254 * 15 12 3 39 39 H 1.09006 * 109.46884 * 65.00540 * 15 12 3 40 40 H 0.96999 * 119.99562 * 359.97438 * 16 15 12 41 41 H 1.07999 * 125.58587 * 359.97438 * 20 19 17 42 42 H 1.08996 * 109.46816 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.47240 * 300.00170 * 25 23 22 44 44 H 1.09003 * 109.46973 * 60.00306 * 25 23 22 45 45 H 1.09003 * 109.46969 * 60.00584 * 27 26 23 46 46 H 1.09000 * 109.47478 * 179.97438 * 27 26 23 47 47 H 1.08998 * 109.47583 * 300.00382 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8811 -1.9830 6 6 3.1501 2.9987 -1.3438 7 7 4.1871 2.9917 -0.5332 8 14 3.0446 4.2633 -2.7145 9 1 1.7882 4.0601 -3.4797 10 1 3.0524 5.6285 -2.1303 11 1 4.2088 4.1069 -3.6230 12 6 2.3820 2.0295 1.2625 13 1 2.7191 3.0470 1.0645 14 6 3.5077 1.2411 1.9350 15 6 1.1630 2.0668 2.1863 16 7 0.0467 2.7174 1.4960 17 6 -1.1389 2.8631 2.1202 18 8 -1.2821 2.4540 3.2566 19 6 -2.2612 3.5166 1.4259 20 6 -3.4762 3.6963 1.9913 21 16 -4.4929 4.4939 0.8721 22 6 -3.2411 4.5324 -0.2889 23 6 -3.3669 5.1288 -1.6672 24 1 -2.3740 5.2679 -2.0948 25 6 -4.1786 4.1865 -2.5584 26 8 -4.0297 6.3918 -1.5810 27 6 -3.6377 7.3239 -2.5908 28 7 -2.1739 3.9876 0.1791 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.8967 3.6430 -0.6479 35 1 3.7785 1.7237 2.8740 36 1 3.1707 0.2236 2.1329 37 1 4.3761 1.2146 1.2767 38 1 1.4080 2.6268 3.0888 39 1 0.8801 1.0491 2.4558 40 1 0.1608 3.0433 0.5895 41 1 -3.7569 3.3903 2.9882 42 1 -4.2692 4.6177 -3.5553 43 1 -3.6730 3.2231 -2.6241 44 1 -5.1715 4.0474 -2.1307 45 1 -3.8613 6.9098 -3.5740 46 1 -4.1856 8.2566 -2.4567 47 1 -2.5677 7.5162 -2.5122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153361612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:00 Heat of formation + Delta-G solvation = -35.629284 kcal Electronic energy + Delta-G solvation = -28855.018417 eV Core-core repulsion = 24972.005022 eV Total energy + Delta-G solvation = -3883.013395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59688 -40.09895 -39.07435 -38.48609 -35.29309 -33.73549 -33.56021 -32.70064 -30.73172 -29.95997 -28.01651 -27.74294 -26.10000 -25.79151 -24.30286 -23.30844 -22.12364 -21.08179 -20.78735 -19.72027 -18.72215 -17.74343 -17.41692 -17.25244 -16.80146 -16.70808 -16.42605 -16.33160 -15.92223 -15.51568 -15.05095 -14.98531 -14.62438 -14.34550 -14.01194 -13.99176 -13.79932 -13.64829 -13.51785 -13.29684 -13.18357 -12.94292 -12.83866 -12.71729 -12.65160 -12.57669 -12.42130 -12.07194 -12.04677 -11.89208 -11.38522 -11.23313 -11.18204 -10.93236 -10.83179 -10.65042 -10.44478 -10.13995 -9.79813 -8.53558 -7.82582 -5.31798 -0.56351 0.21535 0.58073 0.84117 1.45373 1.49828 1.57910 2.20503 2.29627 2.45684 2.53978 3.26909 3.31911 3.62354 3.66468 4.02140 4.05044 4.10788 4.21659 4.26101 4.43209 4.49892 4.53550 4.55109 4.62767 4.69765 4.72149 4.79065 4.83541 4.86558 4.87877 4.92109 4.96245 5.04203 5.17668 5.19944 5.29766 5.45718 5.56805 5.68341 5.75111 5.86649 5.99961 6.32134 6.50197 6.68787 7.16344 7.24468 7.92178 8.44058 9.21559 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.004459 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.852399 B = 6278.299831 C = 8084.993402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.255 4.255 5 H 0.056 0.944 6 C -0.032 4.032 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.268 1.268 10 H -0.295 1.295 11 H -0.296 1.296 12 C 0.182 3.818 13 H 0.067 0.933 14 C -0.134 4.134 15 C 0.111 3.889 16 N -0.682 5.682 17 C 0.582 3.418 18 O -0.579 6.579 19 C -0.013 4.013 20 C -0.236 4.236 21 S 0.327 5.673 22 C 0.000 4.000 23 C 0.161 3.839 24 H 0.083 0.917 25 C -0.163 4.163 26 O -0.393 6.393 27 C 0.025 3.975 28 N -0.458 5.458 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.248 0.752 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.414 0.586 41 H 0.201 0.799 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 5.082 -1.413 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.385 4.385 5 H 0.074 0.926 6 C -0.230 4.230 7 N -0.558 5.558 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.222 1.222 11 H -0.223 1.223 12 C 0.075 3.925 13 H 0.085 0.915 14 C -0.193 4.193 15 C -0.014 4.014 16 N -0.331 5.331 17 C 0.366 3.634 18 O -0.461 6.461 19 C -0.148 4.148 20 C -0.379 4.379 21 S 0.585 5.415 22 C -0.279 4.279 23 C 0.100 3.900 24 H 0.101 0.899 25 C -0.222 4.222 26 O -0.312 6.312 27 C -0.071 4.071 28 N -0.175 5.175 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.251 0.749 41 H 0.218 0.782 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.127 0.873 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.700 5.248 -0.842 20.405 hybrid contribution 1.761 0.284 -0.732 1.928 sum -17.940 5.532 -1.574 18.839 Atomic orbital electron populations 1.22243 0.98463 1.00083 1.00494 1.20823 0.92682 0.86159 0.98815 1.43990 1.76065 1.09235 1.02005 1.19194 1.07560 1.17983 0.93759 0.92624 1.25668 0.94580 1.02892 0.99812 1.70133 1.08351 1.36404 1.40962 0.85502 0.77377 0.79528 0.79821 1.19247 1.22176 1.22314 1.20343 0.89868 0.97969 0.84312 0.91464 1.21869 0.99421 0.98802 0.99189 1.22039 0.87481 0.96501 0.95395 1.45844 1.10498 1.57592 1.19129 1.17420 0.82289 0.78713 0.84970 1.90725 1.83762 1.52826 1.18800 1.20254 0.95887 1.07324 0.91382 1.27021 0.97517 1.05051 1.08303 1.82385 1.12623 1.46163 1.00344 1.27169 0.93661 1.03872 1.03174 1.20368 0.97988 0.84885 0.86799 0.89865 1.22264 1.00701 0.99020 1.00189 1.87831 1.65282 1.23374 1.54698 1.23060 1.00262 0.92807 0.90966 1.66851 1.28366 1.11501 1.10789 0.94690 0.92436 0.93960 0.94844 0.93427 0.94279 0.93056 0.93664 0.93145 0.92418 0.92453 0.74864 0.78199 0.89197 0.91428 0.90361 0.91964 0.87332 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 9.87 71.98 0.71 -5.00 16 2 C 0.14 5.79 5.67 86.38 0.49 6.28 16 3 N -0.59 -27.60 1.85 -678.01 -1.25 -28.86 16 4 C -0.25 -13.15 9.26 84.03 0.78 -12.37 16 5 H 0.06 2.92 7.89 -2.91 -0.02 2.90 16 6 C -0.03 -1.71 4.85 84.86 0.41 -1.29 16 7 N -0.91 -50.46 10.60 21.65 0.23 -50.23 16 8 Si 0.95 43.38 29.59 68.60 2.03 45.41 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 11 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 12 C 0.18 8.16 1.92 44.99 0.09 8.25 16 13 H 0.07 3.49 6.04 -2.39 -0.01 3.47 16 14 C -0.13 -5.56 9.05 71.98 0.65 -4.91 16 15 C 0.11 4.52 4.34 86.38 0.37 4.89 16 16 N -0.68 -27.80 3.98 -466.52 -1.86 -29.66 16 17 C 0.58 22.93 7.56 86.62 0.65 23.58 16 18 O -0.58 -24.69 16.71 -4.13 -0.07 -24.76 16 19 C -0.01 -0.44 6.70 40.56 0.27 -0.17 16 20 C -0.24 -6.20 10.62 67.12 0.71 -5.48 16 21 S 0.33 6.53 22.73 -56.49 -1.28 5.24 16 22 C 0.00 0.00 6.30 88.58 0.56 0.56 16 23 C 0.16 3.50 3.23 29.85 0.10 3.60 16 24 H 0.08 2.00 7.79 -2.39 -0.02 1.98 16 25 C -0.16 -2.72 9.51 71.98 0.68 -2.04 16 26 O -0.39 -7.70 10.16 -148.98 -1.51 -9.21 16 27 C 0.02 0.35 10.82 113.37 1.23 1.57 16 28 N -0.46 -15.24 10.12 -180.83 -1.83 -17.07 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.64 4.99 -2.39 -0.01 1.63 16 32 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 33 H 0.05 1.84 6.45 -2.38 -0.02 1.83 16 34 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.71 6.67 -2.39 -0.02 1.69 16 37 H 0.05 2.39 7.40 -2.39 -0.02 2.38 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.30 7.05 -2.38 -0.02 2.29 16 40 H 0.41 18.12 7.42 -92.71 -0.69 17.43 16 41 H 0.20 4.61 8.03 -2.91 -0.02 4.58 16 42 H 0.09 1.15 7.87 -2.39 -0.02 1.13 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 46 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.04 0.63 8.08 -2.39 -0.02 0.61 16 Total: -1.00 -63.65 393.70 2.45 -61.20 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.29 Total: 30.46 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 7.71 Total: 17.47 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -4.71 Total: -125.82 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.58 Total: -33.97 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.28 Total: 5.24 kcal Total: -63.65 2.45 -61.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153361612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.574 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds