Wall clock time and date at job start Wed Apr 1 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.46957 * 2 1 4 4 C 1.36946 * 120.00166 * 274.03913 * 3 2 1 5 5 H 1.07993 * 120.00097 * 174.71285 * 4 3 2 6 6 C 1.38812 * 119.99769 * 354.70901 * 4 3 2 7 7 N 1.31622 * 119.99912 * 31.38363 * 6 4 3 8 8 Si 1.86793 * 120.00283 * 211.38451 * 6 4 3 9 9 H 1.48497 * 109.47542 * 84.99456 * 8 6 4 10 10 H 1.48501 * 109.47558 * 204.99855 * 8 6 4 11 11 H 1.48505 * 109.46946 * 324.99660 * 8 6 4 12 12 C 1.46499 * 120.00293 * 94.04380 * 3 2 1 13 13 H 1.09000 * 109.47349 * 179.97438 * 12 3 2 14 14 C 1.52994 * 109.47102 * 59.99607 * 12 3 2 15 15 C 1.53004 * 109.47012 * 299.99694 * 12 3 2 16 16 N 1.46499 * 109.46932 * 304.99976 * 15 12 3 17 17 C 1.34778 * 119.99939 * 179.97438 * 16 15 12 18 18 O 1.21627 * 119.99961 * 0.02562 * 17 16 15 19 19 C 1.47269 * 120.00291 * 180.02562 * 17 16 15 20 20 C 1.35200 * 123.14381 * 180.02562 * 19 17 16 21 21 S 1.70944 * 108.82842 * 179.97438 * 20 19 17 22 22 C 1.70774 * 91.12662 * 359.97438 * 21 20 19 23 23 C 1.50703 * 124.71774 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47108 * 194.97772 * 23 22 21 25 25 C 1.53002 * 109.47041 * 74.97656 * 23 22 21 26 26 O 1.42909 * 109.47107 * 314.97653 * 23 22 21 27 27 C 1.42894 * 113.99611 * 210.00249 * 26 23 22 28 28 N 1.28642 * 110.55819 * 359.76617 * 22 21 20 29 29 H 1.09002 * 109.47149 * 299.99569 * 1 2 3 30 30 H 1.08999 * 109.47435 * 60.00303 * 1 2 3 31 31 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46525 * 240.00002 * 2 1 3 33 33 H 1.08999 * 109.47295 * 120.00234 * 2 1 3 34 34 H 0.97006 * 119.99980 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47276 * 300.00360 * 14 12 3 36 36 H 1.08993 * 109.47267 * 60.00294 * 14 12 3 37 37 H 1.09008 * 109.46848 * 180.02562 * 14 12 3 38 38 H 1.08996 * 109.47198 * 185.00113 * 15 12 3 39 39 H 1.09003 * 109.46834 * 64.99650 * 15 12 3 40 40 H 0.97006 * 120.00479 * 0.27406 * 16 15 12 41 41 H 1.08004 * 125.58867 * 359.95620 * 20 19 17 42 42 H 1.09005 * 109.46889 * 299.99223 * 25 23 22 43 43 H 1.08997 * 109.47492 * 60.00071 * 25 23 22 44 44 H 1.09003 * 109.47070 * 180.02562 * 25 23 22 45 45 H 1.08995 * 109.47508 * 59.99888 * 27 26 23 46 46 H 1.09004 * 109.46748 * 179.97438 * 27 26 23 47 47 H 1.09005 * 109.47128 * 299.99636 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4454 3.0982 -1.1789 6 6 1.9625 1.3957 -2.3874 7 7 1.0859 0.4166 -2.4609 8 14 2.9302 1.8985 -3.9040 9 1 4.2409 1.2005 -3.9089 10 1 2.1676 1.5282 -5.1232 11 1 3.1515 3.3669 -3.8855 12 6 2.3468 2.0420 1.2655 13 1 2.6912 3.0569 1.0668 14 6 3.4517 1.2593 1.9778 15 6 1.1020 2.0901 2.1539 16 7 0.0067 2.7349 1.4253 17 6 -1.1959 2.8883 2.0140 18 8 -1.3718 2.4919 3.1503 19 6 -2.2972 3.5359 1.2814 20 6 -3.5274 3.7228 1.8100 21 16 -4.5129 4.5034 0.6517 22 6 -3.2261 4.5359 -0.4706 23 6 -3.3118 5.1181 -1.8580 24 1 -2.4596 4.7795 -2.4473 25 6 -3.2977 6.6456 -1.7719 26 8 -4.5234 4.6872 -2.4814 27 6 -4.4366 4.5725 -3.9031 28 7 -2.1720 3.9992 0.0350 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.9422 -0.0436 -3.3026 35 1 3.1078 0.2443 2.1765 36 1 4.3385 1.2251 1.3449 37 1 3.6958 1.7508 2.9196 38 1 1.3220 2.6591 3.0572 39 1 0.8101 1.0756 2.4255 40 1 0.1458 3.0475 0.5176 41 1 -3.8371 3.4270 2.8016 42 1 -4.1500 6.9841 -1.1826 43 1 -2.3736 6.9743 -1.2964 44 1 -3.3601 7.0667 -2.7753 45 1 -3.6657 3.8470 -4.1627 46 1 -5.3959 4.2405 -4.3000 47 1 -4.1818 5.5422 -4.3310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153361613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:03 Heat of formation + Delta-G solvation = -3.522537 kcal Electronic energy + Delta-G solvation = -28899.267101 eV Core-core repulsion = 25017.645959 eV Total energy + Delta-G solvation = -3881.621142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.29655 -38.80274 -37.99370 -36.87798 -33.84908 -32.60194 -32.05648 -30.13688 -29.64375 -28.40453 -27.02867 -26.64914 -24.96496 -23.74543 -23.07277 -21.70827 -20.96093 -19.59797 -19.07766 -18.36647 -16.91800 -16.47411 -16.41087 -16.14106 -15.57364 -15.35207 -15.16792 -14.82352 -14.23083 -14.05952 -13.72189 -13.47980 -13.11267 -12.92872 -12.84532 -12.59795 -12.51965 -12.37849 -12.05935 -11.88440 -11.85101 -11.77655 -11.43107 -11.20683 -11.09186 -10.75443 -10.69107 -10.57192 -10.27563 -10.03575 -9.80149 -9.77788 -9.64510 -9.57850 -9.55457 -9.24060 -8.88901 -8.36739 -8.18637 -6.97733 -5.80746 -3.01096 0.58872 1.28616 1.71436 2.14880 3.24770 3.39490 3.47984 3.50209 3.72841 3.82442 4.29106 4.49597 4.75978 4.93158 5.03895 5.16902 5.24527 5.27476 5.30195 5.38865 5.43328 5.49569 5.57022 5.58520 5.59528 5.90201 5.92200 5.98253 6.10087 6.16012 6.33656 6.35549 6.66945 6.74492 6.86902 6.88605 7.03726 7.05760 7.18044 7.27246 7.52821 7.71829 7.85844 8.18363 8.20471 8.33788 8.71806 9.24292 9.88136 10.33357 11.22756 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.004616 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.438128 B = 6064.909950 C = 8181.592163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 N -0.593 5.593 4 C -0.258 4.258 5 H 0.075 0.925 6 C 0.010 3.990 7 N -0.879 5.879 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.296 1.296 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.157 4.157 15 C 0.103 3.897 16 N -0.679 5.679 17 C 0.586 3.414 18 O -0.556 6.556 19 C 0.021 3.979 20 C -0.236 4.236 21 S 0.227 5.773 22 C 0.023 3.977 23 C 0.162 3.838 24 H 0.099 0.901 25 C -0.167 4.167 26 O -0.383 6.383 27 C 0.032 3.968 28 N -0.421 5.421 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.012 0.988 32 H 0.084 0.916 33 H 0.006 0.994 34 H 0.251 0.749 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.421 0.579 41 H 0.188 0.812 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 9.963 2.564 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 N -0.315 5.315 4 C -0.386 4.386 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.524 5.524 8 Si 0.708 3.292 9 H -0.218 1.218 10 H -0.223 1.223 11 H -0.209 1.209 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.217 4.217 15 C -0.023 4.023 16 N -0.329 5.329 17 C 0.369 3.631 18 O -0.436 6.436 19 C -0.114 4.114 20 C -0.378 4.378 21 S 0.484 5.516 22 C -0.256 4.256 23 C 0.100 3.900 24 H 0.117 0.883 25 C -0.226 4.226 26 O -0.301 6.301 27 C -0.065 4.065 28 N -0.137 5.137 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.031 0.969 32 H 0.102 0.898 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.260 0.740 41 H 0.205 0.795 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.120 9.849 2.944 15.143 hybrid contribution 1.441 -0.237 -1.007 1.774 sum -9.679 9.612 1.937 13.778 Atomic orbital electron populations 1.22414 0.99167 0.97838 1.01429 1.20891 0.92452 0.84509 0.97997 1.44254 1.75579 1.11209 1.00477 1.19185 1.41394 0.94738 0.83268 0.90683 1.24666 0.98764 0.98321 0.97067 1.70304 1.30405 1.26695 1.24968 0.86645 0.81330 0.77913 0.83272 1.21777 1.22291 1.20876 1.20547 0.91108 0.96485 0.86627 0.91364 1.22179 0.99667 1.00610 0.99234 1.22097 0.88190 0.97319 0.94723 1.45761 1.09806 1.57895 1.19413 1.17028 0.81867 0.79035 0.85154 1.90753 1.82840 1.51962 1.18050 1.20504 0.95333 1.04740 0.90856 1.26676 0.97610 1.06649 1.06913 1.82719 1.15654 1.50438 1.02740 1.26717 0.93040 1.04230 1.01652 1.20315 0.89287 0.93375 0.86981 0.88347 1.22284 1.03393 0.93630 1.03276 1.87865 1.33132 1.88461 1.20684 1.22856 1.03088 1.00567 0.79966 1.66896 1.28140 1.09237 1.09381 0.96278 0.89337 0.96901 0.89807 0.97590 0.93889 0.92957 0.92227 0.93639 0.92642 0.91851 0.73993 0.79504 0.91497 0.90636 0.91086 0.93110 0.89251 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.27 37.16 0.34 -3.21 16 2 C 0.17 3.93 5.01 -4.05 -0.02 3.91 16 3 N -0.59 -13.60 1.91 -165.67 -0.32 -13.92 16 4 C -0.26 -6.51 9.38 -15.06 -0.14 -6.66 16 5 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 6 C 0.01 0.26 4.97 -17.43 -0.09 0.17 16 7 N -0.88 -23.71 8.40 55.49 0.47 -23.24 16 8 Si 0.88 20.76 29.65 -169.99 -5.04 15.72 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 C 0.16 3.10 2.87 -67.93 -0.19 2.91 16 13 H 0.07 1.30 7.78 -51.93 -0.40 0.89 16 14 C -0.16 -2.64 9.18 37.15 0.34 -2.30 16 15 C 0.10 1.94 4.32 -4.04 -0.02 1.92 16 16 N -0.68 -13.48 3.99 -61.43 -0.25 -13.73 16 17 C 0.59 11.67 7.55 -12.59 -0.10 11.58 16 18 O -0.56 -11.97 16.71 5.25 0.09 -11.88 16 19 C 0.02 0.38 6.70 -84.53 -0.57 -0.19 16 20 C -0.24 -3.45 10.62 29.65 0.31 -3.13 16 21 S 0.23 2.73 22.74 -107.50 -2.44 0.29 16 22 C 0.02 0.34 6.30 -13.61 -0.09 0.25 16 23 C 0.16 2.00 3.23 -27.88 -0.09 1.91 16 24 H 0.10 1.31 7.79 -51.93 -0.40 0.90 16 25 C -0.17 -1.59 9.51 37.16 0.35 -1.24 16 26 O -0.38 -4.59 10.17 -35.23 -0.36 -4.95 16 27 C 0.03 0.29 10.82 101.05 1.09 1.39 16 28 N -0.42 -7.36 10.12 -8.51 -0.09 -7.45 16 29 H 0.02 0.43 4.84 -51.93 -0.25 0.18 16 30 H 0.09 2.38 6.30 -51.93 -0.33 2.05 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 2.22 5.84 -51.93 -0.30 1.92 16 33 H 0.01 0.13 6.43 -51.93 -0.33 -0.20 16 34 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.28 6.92 -51.93 -0.36 0.92 16 40 H 0.42 8.96 7.40 -40.82 -0.30 8.66 16 41 H 0.19 2.44 8.03 -52.48 -0.42 2.02 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 45 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -29.58 389.68 -8.11 -37.69 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.19 Total: 8.28 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 1.15 Total: 7.31 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.18 Total: -58.33 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.27 Total: -16.83 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.04 Total: 15.72 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.44 Total: 0.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.58 -8.11 -37.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153361613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.167 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds