Wall clock time and date at job start Wed Apr 1 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.46957 * 2 1 4 4 C 1.36946 * 120.00166 * 274.03913 * 3 2 1 5 5 H 1.07993 * 120.00097 * 174.71285 * 4 3 2 6 6 C 1.38812 * 119.99769 * 354.70901 * 4 3 2 7 7 N 1.31622 * 119.99912 * 31.38363 * 6 4 3 8 8 Si 1.86793 * 120.00283 * 211.38451 * 6 4 3 9 9 H 1.48497 * 109.47542 * 84.99456 * 8 6 4 10 10 H 1.48501 * 109.47558 * 204.99855 * 8 6 4 11 11 H 1.48505 * 109.46946 * 324.99660 * 8 6 4 12 12 C 1.46499 * 120.00293 * 94.04380 * 3 2 1 13 13 H 1.09000 * 109.47349 * 179.97438 * 12 3 2 14 14 C 1.52994 * 109.47102 * 59.99607 * 12 3 2 15 15 C 1.53004 * 109.47012 * 299.99694 * 12 3 2 16 16 N 1.46499 * 109.46932 * 304.99976 * 15 12 3 17 17 C 1.34778 * 119.99939 * 179.97438 * 16 15 12 18 18 O 1.21627 * 119.99961 * 0.02562 * 17 16 15 19 19 C 1.47269 * 120.00291 * 180.02562 * 17 16 15 20 20 C 1.35200 * 123.14381 * 180.02562 * 19 17 16 21 21 S 1.70944 * 108.82842 * 179.97438 * 20 19 17 22 22 C 1.70774 * 91.12662 * 359.97438 * 21 20 19 23 23 C 1.50703 * 124.71774 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47108 * 194.97772 * 23 22 21 25 25 C 1.53002 * 109.47041 * 74.97656 * 23 22 21 26 26 O 1.42909 * 109.47107 * 314.97653 * 23 22 21 27 27 C 1.42894 * 113.99611 * 210.00249 * 26 23 22 28 28 N 1.28642 * 110.55819 * 359.76617 * 22 21 20 29 29 H 1.09002 * 109.47149 * 299.99569 * 1 2 3 30 30 H 1.08999 * 109.47435 * 60.00303 * 1 2 3 31 31 H 1.08999 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46525 * 240.00002 * 2 1 3 33 33 H 1.08999 * 109.47295 * 120.00234 * 2 1 3 34 34 H 0.97006 * 119.99980 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47276 * 300.00360 * 14 12 3 36 36 H 1.08993 * 109.47267 * 60.00294 * 14 12 3 37 37 H 1.09008 * 109.46848 * 180.02562 * 14 12 3 38 38 H 1.08996 * 109.47198 * 185.00113 * 15 12 3 39 39 H 1.09003 * 109.46834 * 64.99650 * 15 12 3 40 40 H 0.97006 * 120.00479 * 0.27406 * 16 15 12 41 41 H 1.08004 * 125.58867 * 359.95620 * 20 19 17 42 42 H 1.09005 * 109.46889 * 299.99223 * 25 23 22 43 43 H 1.08997 * 109.47492 * 60.00071 * 25 23 22 44 44 H 1.09003 * 109.47070 * 180.02562 * 25 23 22 45 45 H 1.08995 * 109.47508 * 59.99888 * 27 26 23 46 46 H 1.09004 * 109.46748 * 179.97438 * 27 26 23 47 47 H 1.09005 * 109.47128 * 299.99636 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4454 3.0982 -1.1789 6 6 1.9625 1.3957 -2.3874 7 7 1.0859 0.4166 -2.4609 8 14 2.9302 1.8985 -3.9040 9 1 4.2409 1.2005 -3.9089 10 1 2.1676 1.5282 -5.1232 11 1 3.1515 3.3669 -3.8855 12 6 2.3468 2.0420 1.2655 13 1 2.6912 3.0569 1.0668 14 6 3.4517 1.2593 1.9778 15 6 1.1020 2.0901 2.1539 16 7 0.0067 2.7349 1.4253 17 6 -1.1959 2.8883 2.0140 18 8 -1.3718 2.4919 3.1503 19 6 -2.2972 3.5359 1.2814 20 6 -3.5274 3.7228 1.8100 21 16 -4.5129 4.5034 0.6517 22 6 -3.2261 4.5359 -0.4706 23 6 -3.3118 5.1181 -1.8580 24 1 -2.4596 4.7795 -2.4473 25 6 -3.2977 6.6456 -1.7719 26 8 -4.5234 4.6872 -2.4814 27 6 -4.4366 4.5725 -3.9031 28 7 -2.1720 3.9992 0.0350 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.9422 -0.0436 -3.3026 35 1 3.1078 0.2443 2.1765 36 1 4.3385 1.2251 1.3449 37 1 3.6958 1.7508 2.9196 38 1 1.3220 2.6591 3.0572 39 1 0.8101 1.0756 2.4255 40 1 0.1458 3.0475 0.5176 41 1 -3.8371 3.4270 2.8016 42 1 -4.1500 6.9841 -1.1826 43 1 -2.3736 6.9743 -1.2964 44 1 -3.3601 7.0667 -2.7753 45 1 -3.6657 3.8470 -4.1627 46 1 -5.3959 4.2405 -4.3000 47 1 -4.1818 5.5422 -4.3310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153361613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:02 Heat of formation + Delta-G solvation = -21.946352 kcal Electronic energy + Delta-G solvation = -28900.066017 eV Core-core repulsion = 25017.645959 eV Total energy + Delta-G solvation = -3882.420058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58742 -40.10361 -39.07917 -38.53101 -35.55523 -33.82449 -33.49237 -32.00918 -30.73381 -30.24708 -28.05738 -27.75192 -26.13176 -25.63617 -24.30618 -23.47965 -22.11996 -20.97802 -20.65308 -19.66104 -18.78152 -17.73137 -17.41608 -17.24937 -17.17993 -16.70051 -16.44859 -16.19495 -15.81716 -15.49422 -15.03661 -14.89187 -14.57970 -14.32825 -14.12375 -13.99539 -13.73873 -13.63034 -13.53550 -13.27082 -13.17890 -12.94017 -12.77762 -12.64074 -12.57694 -12.47170 -12.39159 -12.11412 -12.06658 -11.62413 -11.42030 -11.24408 -11.15470 -10.91497 -10.83505 -10.62945 -10.20119 -10.12117 -9.78544 -8.88071 -7.79438 -4.98970 -0.55701 0.22550 0.58892 0.85359 1.48914 1.55553 1.58810 2.16964 2.37397 2.44642 2.57753 3.27138 3.29211 3.63467 3.66861 4.01928 4.05223 4.07420 4.12155 4.25655 4.38789 4.49212 4.55521 4.58993 4.65379 4.68634 4.72798 4.77551 4.82047 4.86205 4.87847 4.98521 5.10611 5.18032 5.23943 5.27680 5.34179 5.41144 5.58417 5.70983 5.88014 6.00517 6.17075 6.32903 6.37463 6.67013 7.16633 7.26431 7.98360 8.40084 9.22897 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.004616 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.438128 B = 6064.909950 C = 8181.592163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.174 3.826 3 N -0.600 5.600 4 C -0.254 4.254 5 H 0.076 0.924 6 C -0.036 4.036 7 N -0.902 5.902 8 Si 0.934 3.066 9 H -0.296 1.296 10 H -0.305 1.305 11 H -0.276 1.276 12 C 0.159 3.841 13 H 0.071 0.929 14 C -0.148 4.148 15 C 0.109 3.891 16 N -0.683 5.683 17 C 0.583 3.417 18 O -0.580 6.580 19 C -0.014 4.014 20 C -0.238 4.238 21 S 0.324 5.676 22 C 0.000 4.000 23 C 0.160 3.840 24 H 0.080 0.920 25 C -0.161 4.161 26 O -0.394 6.394 27 C 0.026 3.974 28 N -0.456 5.456 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.015 0.985 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.243 0.757 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.414 0.586 41 H 0.201 0.799 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.108 0.892 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 11.540 3.060 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 N -0.322 5.322 4 C -0.383 4.383 5 H 0.094 0.906 6 C -0.232 4.232 7 N -0.548 5.548 8 Si 0.765 3.235 9 H -0.224 1.224 10 H -0.232 1.232 11 H -0.201 1.201 12 C 0.052 3.948 13 H 0.090 0.910 14 C -0.207 4.207 15 C -0.016 4.016 16 N -0.331 5.331 17 C 0.367 3.633 18 O -0.462 6.462 19 C -0.150 4.150 20 C -0.381 4.381 21 S 0.582 5.418 22 C -0.279 4.279 23 C 0.099 3.901 24 H 0.098 0.902 25 C -0.219 4.219 26 O -0.313 6.313 27 C -0.070 4.070 28 N -0.173 5.173 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.251 0.749 41 H 0.218 0.782 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.053 0.947 46 H 0.126 0.874 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.975 11.455 3.448 16.927 hybrid contribution 1.590 -0.674 -1.140 2.069 sum -10.385 10.782 2.308 15.147 Atomic orbital electron populations 1.22199 0.99476 0.97484 0.99841 1.20681 0.92007 0.85029 0.97351 1.44359 1.75616 1.10928 1.01319 1.19389 1.39884 0.94835 0.84156 0.90591 1.25176 0.99662 0.99162 0.99176 1.70443 1.31552 1.28004 1.24802 0.85761 0.79503 0.77733 0.80523 1.22409 1.23247 1.20103 1.20756 0.91950 0.96771 0.85371 0.91035 1.22059 0.98138 1.00227 1.00264 1.22042 0.87670 0.96785 0.95152 1.45815 1.10324 1.57988 1.19007 1.17373 0.82261 0.78605 0.85026 1.90715 1.83304 1.53180 1.18963 1.20304 0.95806 1.07178 0.91677 1.27015 0.97299 1.05622 1.08141 1.82330 1.12372 1.47577 0.99535 1.27177 0.93734 1.03810 1.03136 1.20387 0.88896 0.94995 0.85808 0.90234 1.22254 1.03656 0.91299 1.04688 1.87823 1.32717 1.88702 1.22070 1.23037 1.03730 1.01421 0.78766 1.66854 1.30129 1.10613 1.09683 0.96087 0.92414 0.96610 0.92628 0.95845 0.94769 0.93343 0.92730 0.90428 0.90822 0.93272 0.74914 0.78194 0.90336 0.91057 0.89210 0.94655 0.87379 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 9.27 71.98 0.67 -5.69 16 2 C 0.17 8.33 5.01 86.38 0.43 8.76 16 3 N -0.60 -27.55 1.91 -678.05 -1.30 -28.85 16 4 C -0.25 -12.89 9.38 84.03 0.79 -12.10 16 5 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 6 C -0.04 -1.90 4.97 84.86 0.42 -1.48 16 7 N -0.90 -49.99 8.40 21.65 0.18 -49.80 16 8 Si 0.93 43.44 29.65 68.60 2.03 45.47 16 9 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.16 5.96 2.87 44.99 0.13 6.09 16 13 H 0.07 2.64 7.78 -2.39 -0.02 2.62 16 14 C -0.15 -4.66 9.18 71.98 0.66 -4.00 16 15 C 0.11 4.05 4.32 86.38 0.37 4.43 16 16 N -0.68 -27.44 3.99 -466.51 -1.86 -29.30 16 17 C 0.58 23.48 7.55 86.62 0.65 24.13 16 18 O -0.58 -25.02 16.71 -4.12 -0.07 -25.09 16 19 C -0.01 -0.50 6.70 40.56 0.27 -0.23 16 20 C -0.24 -6.67 10.62 67.12 0.71 -5.96 16 21 S 0.32 7.08 22.74 -56.49 -1.28 5.80 16 22 C 0.00 0.01 6.30 88.58 0.56 0.57 16 23 C 0.16 3.85 3.23 29.85 0.10 3.95 16 24 H 0.08 2.17 7.79 -2.39 -0.02 2.16 16 25 C -0.16 -2.77 9.51 71.98 0.68 -2.08 16 26 O -0.39 -8.90 10.17 -148.98 -1.52 -10.42 16 27 C 0.03 0.46 10.82 113.37 1.23 1.68 16 28 N -0.46 -16.18 10.12 -180.83 -1.83 -18.01 16 29 H 0.02 0.97 4.84 -2.39 -0.01 0.96 16 30 H 0.06 3.19 6.30 -2.39 -0.02 3.18 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 3.00 5.84 -2.39 -0.01 2.99 16 33 H 0.02 1.02 6.43 -2.39 -0.02 1.01 16 34 H 0.24 13.39 8.31 -92.70 -0.77 12.62 16 35 H 0.05 1.56 6.66 -2.39 -0.02 1.55 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.05 1.97 6.92 -2.39 -0.02 1.95 16 40 H 0.41 18.04 7.40 -92.70 -0.69 17.35 16 41 H 0.20 4.92 8.03 -2.91 -0.02 4.89 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 45 H 0.03 0.71 8.08 -2.39 -0.02 0.70 16 46 H 0.11 1.44 8.14 -2.38 -0.02 1.43 16 47 H 0.06 0.86 7.87 -2.38 -0.02 0.84 16 Total: -1.00 -64.73 389.68 2.33 -62.40 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.30 Total: 29.74 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 7.68 Total: 18.07 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -4.81 Total: -125.96 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.58 Total: -35.51 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.28 Total: 5.80 kcal Total: -64.73 2.33 -62.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153361613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.452 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds