Wall clock time and date at job start Wed Apr 1 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47029 * 2 1 4 4 C 1.36944 * 119.99702 * 89.70432 * 3 2 1 5 5 H 1.07997 * 119.99491 * 225.71983 * 4 3 2 6 6 C 1.38810 * 120.00096 * 45.99985 * 4 3 2 7 7 N 1.31615 * 120.00300 * 198.61851 * 6 4 3 8 8 Si 1.86811 * 119.99906 * 18.61299 * 6 4 3 9 9 H 1.48495 * 109.46875 * 93.48660 * 8 6 4 10 10 H 1.48502 * 109.46820 * 213.48298 * 8 6 4 11 11 H 1.48498 * 109.46813 * 333.48516 * 8 6 4 12 12 C 1.46494 * 120.00269 * 269.70669 * 3 2 1 13 13 H 1.09003 * 109.47227 * 171.61344 * 12 3 2 14 14 C 1.53002 * 109.46857 * 51.61524 * 12 3 2 15 15 C 1.52998 * 109.47146 * 291.61493 * 12 3 2 16 16 N 1.46496 * 109.47144 * 301.31016 * 15 12 3 17 17 C 1.34781 * 120.00107 * 179.77051 * 16 15 12 18 18 O 1.21689 * 119.99949 * 4.83248 * 17 16 15 19 19 C 1.46675 * 120.00005 * 184.84094 * 17 16 15 20 20 C 1.35669 * 126.13436 * 353.48346 * 19 17 16 21 21 N 1.30933 * 114.19242 * 179.79134 * 20 19 17 22 22 C 1.29427 * 117.36724 * 0.51817 * 21 20 19 23 23 C 1.50698 * 124.80645 * 179.68599 * 22 21 20 24 24 H 1.09003 * 109.46979 * 165.02446 * 23 22 21 25 25 C 1.52999 * 109.47697 * 285.02728 * 23 22 21 26 26 O 1.42901 * 109.47206 * 45.03456 * 23 22 21 27 27 C 1.42896 * 114.00419 * 149.99480 * 26 23 22 28 28 S 1.70960 * 110.38969 * 359.71400 * 22 21 20 29 29 H 1.08995 * 109.47047 * 305.51091 * 1 2 3 30 30 H 1.08995 * 109.47225 * 65.51269 * 1 2 3 31 31 H 1.09003 * 109.46430 * 185.51605 * 1 2 3 32 32 H 1.08995 * 109.47443 * 240.00617 * 2 1 3 33 33 H 1.08998 * 109.47526 * 119.99747 * 2 1 3 34 34 H 0.96997 * 120.00488 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47304 * 299.99774 * 14 12 3 36 36 H 1.08999 * 109.47205 * 60.00216 * 14 12 3 37 37 H 1.09005 * 109.47030 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.47119 * 61.30766 * 15 12 3 39 39 H 1.09004 * 109.46850 * 181.30737 * 15 12 3 40 40 H 0.96995 * 120.00141 * 359.75954 * 16 15 12 41 41 H 1.07997 * 122.89563 * 359.96383 * 20 19 17 42 42 H 1.09000 * 109.47257 * 300.00362 * 25 23 22 43 43 H 1.09008 * 109.46318 * 60.00099 * 25 23 22 44 44 H 1.08999 * 109.47393 * 179.97438 * 25 23 22 45 45 H 1.09002 * 109.46979 * 179.97438 * 27 26 23 46 46 H 1.08996 * 109.47365 * 299.99930 * 27 26 23 47 47 H 1.09006 * 109.46828 * 60.00036 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2408 2.0288 1.1860 5 1 1.8872 3.0399 1.3236 6 6 2.9257 1.3876 2.2090 7 7 2.8308 1.8322 3.4442 8 14 3.9821 -0.1064 1.8327 9 1 5.3839 0.3246 1.6001 10 1 3.9373 -1.0463 2.9816 11 1 3.4646 -0.7851 0.6175 12 6 2.2686 2.0697 -1.2686 13 1 2.4804 3.1214 -1.0757 14 6 1.0333 1.9542 -2.1639 15 6 3.4680 1.4281 -1.9691 16 7 4.6435 1.5109 -1.0988 17 6 5.8225 1.0024 -1.5085 18 8 5.9334 0.5538 -2.6343 19 6 6.9719 0.9895 -0.5975 20 6 7.0258 1.5634 0.6307 21 7 8.1699 1.4048 1.2473 22 6 9.0944 0.7459 0.6259 23 6 10.4711 0.4711 1.1739 24 1 10.9480 -0.3107 0.5827 25 6 11.3119 1.7474 1.1046 26 8 10.3659 0.0430 2.5332 27 6 11.4032 -0.8503 2.9432 28 16 8.5331 0.2322 -0.9050 29 1 -0.3633 0.5969 0.8365 30 1 -0.3633 0.4259 -0.9352 31 1 -0.3632 -1.0230 0.0988 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3091 1.3840 4.1591 35 1 0.8215 0.9026 -2.3569 36 1 0.1788 2.4113 -1.6649 37 1 1.2196 2.4661 -3.1081 38 1 3.2472 0.3823 -2.1829 39 1 3.6686 1.9552 -2.9019 40 1 4.5734 1.9318 -0.2278 41 1 6.1957 2.1020 1.0633 42 1 11.3921 2.0739 0.0678 43 1 10.8348 2.5291 1.6959 44 1 12.3074 1.5487 1.5014 45 1 11.2522 -1.1280 3.9863 46 1 11.3788 -1.7452 2.3214 47 1 12.3700 -0.3587 2.8346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153362211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:52 Heat of formation + Delta-G solvation = -26.602126 kcal Electronic energy + Delta-G solvation = -28604.123302 eV Core-core repulsion = 24721.501354 eV Total energy + Delta-G solvation = -3882.621948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45170 -40.48926 -39.07479 -38.77756 -35.61926 -34.22735 -33.62526 -32.57708 -30.94956 -30.63083 -27.92537 -27.31391 -26.61777 -25.53664 -24.13378 -23.95952 -22.62098 -21.26325 -20.51047 -19.50006 -18.81452 -18.52374 -17.43243 -17.31446 -17.07046 -16.85332 -16.48539 -16.37285 -15.91743 -15.71414 -15.28357 -15.16221 -14.83723 -14.54889 -14.37754 -14.20455 -13.95473 -13.65058 -13.61874 -13.33630 -13.25401 -13.14345 -13.05034 -12.85894 -12.66939 -12.51625 -12.38865 -12.02992 -11.96269 -11.76619 -11.61998 -11.47056 -11.09673 -10.94450 -10.73337 -10.60501 -10.56523 -10.15951 -9.94577 -8.62113 -8.20271 -5.68621 -0.99644 -0.09266 0.39580 1.19131 1.31027 1.48079 1.51401 1.98812 2.23027 2.42100 2.73932 2.90467 3.06273 3.33784 3.61063 3.66486 3.94586 3.99793 4.00689 4.04658 4.31595 4.38532 4.44143 4.53945 4.55574 4.63249 4.71513 4.73400 4.76412 4.79714 4.82422 4.84282 4.86157 5.00500 5.09024 5.20474 5.23137 5.29524 5.35192 5.49795 5.60456 5.96812 6.08190 6.28670 6.34777 6.49012 6.95708 7.05016 7.64042 8.11830 8.97585 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.003790 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.117906 B = 7385.732382 C = 8516.579092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 N -0.604 5.604 4 C -0.253 4.253 5 H 0.043 0.957 6 C 0.006 3.994 7 N -0.941 5.941 8 Si 0.897 3.103 9 H -0.257 1.257 10 H -0.330 1.330 11 H -0.238 1.238 12 C 0.154 3.846 13 H 0.072 0.928 14 C -0.147 4.147 15 C 0.108 3.892 16 N -0.698 5.698 17 C 0.590 3.410 18 O -0.571 6.571 19 C -0.322 4.322 20 C 0.105 3.895 21 N -0.483 5.483 22 C 0.036 3.964 23 C 0.160 3.840 24 H 0.117 0.883 25 C -0.163 4.163 26 O -0.400 6.400 27 C 0.020 3.980 28 S 0.274 5.726 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.259 0.741 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.408 0.592 41 H 0.170 0.830 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.559 -4.149 -10.035 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.008 3.992 3 N -0.328 5.328 4 C -0.383 4.383 5 H 0.060 0.940 6 C -0.192 4.192 7 N -0.584 5.584 8 Si 0.726 3.274 9 H -0.183 1.183 10 H -0.260 1.260 11 H -0.162 1.162 12 C 0.048 3.952 13 H 0.091 0.909 14 C -0.206 4.206 15 C -0.018 4.018 16 N -0.349 5.349 17 C 0.376 3.624 18 O -0.453 6.453 19 C -0.446 4.446 20 C -0.054 4.054 21 N -0.198 5.198 22 C -0.239 4.239 23 C 0.099 3.901 24 H 0.134 0.866 25 C -0.221 4.221 26 O -0.319 6.319 27 C -0.076 4.076 28 S 0.533 5.467 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.245 0.755 41 H 0.187 0.813 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.075 0.925 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.091 -4.819 -10.868 20.006 hybrid contribution -0.587 -0.036 1.676 1.776 sum 15.504 -4.856 -9.192 18.667 Atomic orbital electron populations 1.22321 0.97351 1.00532 1.01760 1.21293 0.93521 0.85947 0.98408 1.44203 1.75708 1.11569 1.01336 1.18543 1.29789 0.99354 0.90659 0.93987 1.26077 0.98337 0.99730 0.95069 1.69956 1.44324 1.43808 1.00303 0.86974 0.81808 0.81257 0.77348 1.18280 1.25956 1.16155 1.20965 0.92419 0.96153 0.85676 0.90930 1.22111 0.96943 1.02349 0.99164 1.22153 0.84806 1.01520 0.93287 1.45900 1.08815 1.58181 1.21976 1.16814 0.82113 0.78018 0.85446 1.90757 1.84685 1.49633 1.20245 1.25869 1.02205 1.14674 1.01855 1.22224 0.95502 0.97888 0.89745 1.66058 1.00866 1.17577 1.35321 1.28113 1.00863 0.98410 0.96470 1.20863 0.85637 0.99169 0.84455 0.86553 1.22255 1.00210 0.95810 1.03868 1.88086 1.51583 1.65805 1.26443 1.23112 0.90508 0.92419 1.01547 1.83387 1.01008 1.47596 1.14716 0.94893 0.91137 0.92604 0.92889 0.95615 0.93181 0.92097 0.92547 0.90372 0.92436 0.89921 0.75484 0.81322 0.89688 0.92915 0.88580 0.89028 0.92454 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.57 9.89 71.98 0.71 -4.86 16 2 C 0.13 5.29 3.71 86.38 0.32 5.61 16 3 N -0.60 -25.21 1.55 -678.04 -1.05 -26.26 16 4 C -0.25 -13.04 9.10 84.03 0.76 -12.27 16 5 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 6 C 0.01 0.32 5.32 84.86 0.45 0.78 16 7 N -0.94 -56.84 13.97 21.65 0.30 -56.54 16 8 Si 0.90 43.44 24.13 68.60 1.66 45.09 16 9 H -0.26 -11.83 3.96 99.48 0.39 -11.44 16 10 H -0.33 -17.53 7.11 99.48 0.71 -16.82 16 11 H -0.24 -10.84 4.94 99.48 0.49 -10.35 16 12 C 0.15 5.20 2.81 44.99 0.13 5.33 16 13 H 0.07 2.54 7.91 -2.39 -0.02 2.52 16 14 C -0.15 -3.92 7.89 71.98 0.57 -3.35 16 15 C 0.11 3.53 5.11 86.38 0.44 3.98 16 16 N -0.70 -25.77 4.55 -467.08 -2.12 -27.90 16 17 C 0.59 22.20 7.78 86.45 0.67 22.87 16 18 O -0.57 -22.98 16.98 -4.31 -0.07 -23.05 16 19 C -0.32 -11.30 6.48 23.88 0.15 -11.15 16 20 C 0.11 3.90 8.65 84.23 0.73 4.63 16 21 N -0.48 -17.27 10.49 -190.30 -2.00 -19.27 16 22 C 0.04 1.02 6.28 88.46 0.56 1.58 16 23 C 0.16 3.26 3.23 29.85 0.10 3.35 16 24 H 0.12 1.50 7.78 -2.39 -0.02 1.48 16 25 C -0.16 -2.63 9.51 71.98 0.68 -1.94 16 26 O -0.40 -9.86 10.32 -148.98 -1.54 -11.39 16 27 C 0.02 0.29 10.82 113.37 1.23 1.52 16 28 S 0.27 7.34 23.02 -56.49 -1.30 6.04 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 2.12 5.58 -2.39 -0.01 2.10 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.93 6.74 -2.39 -0.02 1.91 16 33 H 0.03 1.16 4.13 -2.39 -0.01 1.15 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.06 1.56 6.34 -2.39 -0.02 1.55 16 36 H 0.06 1.59 7.89 -2.39 -0.02 1.57 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.96 7.08 -2.39 -0.02 1.94 16 39 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.41 16.10 5.00 -92.71 -0.46 15.63 16 41 H 0.17 6.65 6.64 -2.91 -0.02 6.63 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.12 8.14 -2.38 -0.02 1.11 16 44 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 0.66 8.08 -2.39 -0.02 0.64 16 47 H 0.07 0.65 7.87 -2.38 -0.02 0.63 16 Total: -1.00 -71.07 379.84 1.38 -69.69 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.01 Total: 27.53 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.50 Total: 16.05 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -4.87 Total: -129.96 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.61 Total: -34.45 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.66 Total: 45.09 kcal Atomic # 16 Polarization: 7.34 SS G_CDS: -1.30 Total: 6.04 kcal Total: -71.07 1.38 -69.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.088 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds