Wall clock time and date at job start Wed Apr 1 2020 01:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47029 * 2 1 4 4 C 1.36944 * 119.99702 * 89.70432 * 3 2 1 5 5 H 1.07997 * 119.99491 * 225.71983 * 4 3 2 6 6 C 1.38810 * 120.00096 * 45.99985 * 4 3 2 7 7 N 1.31615 * 120.00300 * 198.61851 * 6 4 3 8 8 Si 1.86811 * 119.99906 * 18.61299 * 6 4 3 9 9 H 1.48495 * 109.46875 * 93.48660 * 8 6 4 10 10 H 1.48502 * 109.46820 * 213.48298 * 8 6 4 11 11 H 1.48498 * 109.46813 * 333.48516 * 8 6 4 12 12 C 1.46494 * 120.00269 * 269.70669 * 3 2 1 13 13 H 1.09003 * 109.47227 * 171.61344 * 12 3 2 14 14 C 1.53002 * 109.46857 * 51.61524 * 12 3 2 15 15 C 1.52998 * 109.47146 * 291.61493 * 12 3 2 16 16 N 1.46496 * 109.47144 * 301.31016 * 15 12 3 17 17 C 1.34781 * 120.00107 * 179.77051 * 16 15 12 18 18 O 1.21689 * 119.99949 * 4.83248 * 17 16 15 19 19 C 1.46675 * 120.00005 * 184.84094 * 17 16 15 20 20 C 1.35669 * 126.13436 * 353.48346 * 19 17 16 21 21 N 1.30933 * 114.19242 * 179.79134 * 20 19 17 22 22 C 1.29427 * 117.36724 * 0.51817 * 21 20 19 23 23 C 1.50701 * 124.80908 * 179.73002 * 22 21 20 24 24 H 1.09002 * 109.47360 * 194.98114 * 23 22 21 25 25 C 1.52997 * 109.46754 * 74.97740 * 23 22 21 26 26 O 1.42902 * 109.47023 * 314.98201 * 23 22 21 27 27 C 1.42898 * 113.99913 * 209.99747 * 26 23 22 28 28 S 1.70960 * 110.38969 * 359.71400 * 22 21 20 29 29 H 1.08995 * 109.47225 * 65.51269 * 1 2 3 30 30 H 1.09003 * 109.46430 * 185.51605 * 1 2 3 31 31 H 1.08995 * 109.47047 * 305.51091 * 1 2 3 32 32 H 1.08995 * 109.47443 * 240.00617 * 2 1 3 33 33 H 1.08998 * 109.47526 * 119.99747 * 2 1 3 34 34 H 0.96997 * 120.00488 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47304 * 299.99774 * 14 12 3 36 36 H 1.08999 * 109.47205 * 60.00216 * 14 12 3 37 37 H 1.09005 * 109.47030 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.47119 * 61.30766 * 15 12 3 39 39 H 1.09004 * 109.46850 * 181.30737 * 15 12 3 40 40 H 0.96995 * 120.00141 * 359.75954 * 16 15 12 41 41 H 1.07997 * 122.89563 * 359.96383 * 20 19 17 42 42 H 1.08996 * 109.47099 * 60.00732 * 25 23 22 43 43 H 1.09004 * 109.47198 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.47493 * 300.00293 * 25 23 22 45 45 H 1.09004 * 109.47145 * 180.02562 * 27 26 23 46 46 H 1.09005 * 109.47217 * 300.00073 * 27 26 23 47 47 H 1.08998 * 109.47466 * 59.99902 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2408 2.0288 1.1860 5 1 1.8872 3.0399 1.3236 6 6 2.9257 1.3876 2.2090 7 7 2.8308 1.8322 3.4442 8 14 3.9821 -0.1064 1.8327 9 1 5.3839 0.3246 1.6001 10 1 3.9373 -1.0463 2.9816 11 1 3.4646 -0.7851 0.6175 12 6 2.2686 2.0697 -1.2686 13 1 2.4804 3.1214 -1.0757 14 6 1.0333 1.9542 -2.1639 15 6 3.4680 1.4281 -1.9691 16 7 4.6435 1.5109 -1.0988 17 6 5.8225 1.0024 -1.5085 18 8 5.9334 0.5538 -2.6343 19 6 6.9719 0.9895 -0.5975 20 6 7.0258 1.5634 0.6307 21 7 8.1699 1.4048 1.2473 22 6 9.0944 0.7459 0.6259 23 6 10.4708 0.4702 1.1742 24 1 11.1244 0.1405 0.3666 25 6 10.3852 -0.6240 2.2402 26 8 10.9989 1.6631 1.7574 27 6 12.4232 1.7602 1.6932 28 16 8.5331 0.2322 -0.9050 29 1 -0.3633 0.4259 -0.9352 30 1 -0.3632 -1.0230 0.0988 31 1 -0.3633 0.5969 0.8365 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3091 1.3840 4.1591 35 1 0.8215 0.9026 -2.3569 36 1 0.1788 2.4113 -1.6649 37 1 1.2196 2.4661 -3.1081 38 1 3.2472 0.3823 -2.1829 39 1 3.6686 1.9552 -2.9019 40 1 4.5734 1.9318 -0.2278 41 1 6.1957 2.1020 1.0633 42 1 9.9825 -1.5339 1.7953 43 1 11.3808 -0.8238 2.6365 44 1 9.7317 -0.2942 3.0478 45 1 12.7451 2.6927 2.1570 46 1 12.8690 0.9184 2.2232 47 1 12.7419 1.7434 0.6510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153362212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:55 Heat of formation + Delta-G solvation = -4.286601 kcal Electronic energy + Delta-G solvation = -28588.226418 eV Core-core repulsion = 24706.572144 eV Total energy + Delta-G solvation = -3881.654274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.13791 -39.14546 -38.10262 -37.20392 -34.04713 -32.76134 -32.21279 -31.09738 -29.71330 -28.94659 -27.12798 -26.26133 -25.33308 -23.69312 -23.02811 -22.37614 -21.36458 -19.72056 -19.21199 -18.27285 -17.26739 -16.96048 -16.34692 -15.83797 -15.61785 -15.58484 -15.27972 -15.19991 -14.42141 -14.36184 -13.98386 -13.73109 -13.44151 -13.12050 -12.94227 -12.81926 -12.73030 -12.55972 -12.30565 -12.14056 -11.97167 -11.90351 -11.70582 -11.51339 -11.44076 -11.27928 -10.86358 -10.70388 -10.30485 -10.25814 -10.07595 -9.97742 -9.84262 -9.45504 -9.37989 -9.26905 -8.94410 -8.63155 -8.44889 -6.80133 -6.10933 -3.64451 0.26857 1.09464 1.63081 2.55850 3.20211 3.40445 3.42281 3.48835 3.53973 3.68766 3.93331 4.42385 4.47082 4.78054 4.87387 4.95769 5.01699 5.08107 5.11106 5.17000 5.34096 5.36407 5.43963 5.45087 5.48965 5.73956 5.91290 5.94371 5.95930 6.00961 6.10173 6.15993 6.21940 6.31376 6.37011 6.55908 6.63853 6.70601 6.81923 6.86487 6.88845 7.12254 7.70037 7.86422 7.99772 8.35908 8.45859 8.91158 9.58893 10.05958 11.03170 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.003693 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.641307 B = 7580.885676 C = 8593.526885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 N -0.598 5.598 4 C -0.282 4.282 5 H 0.075 0.925 6 C 0.048 3.952 7 N -0.892 5.892 8 Si 0.843 3.157 9 H -0.268 1.268 10 H -0.301 1.301 11 H -0.251 1.251 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.156 4.156 15 C 0.104 3.896 16 N -0.694 5.694 17 C 0.589 3.411 18 O -0.552 6.552 19 C -0.288 4.288 20 C 0.109 3.891 21 N -0.446 5.446 22 C 0.030 3.970 23 C 0.169 3.831 24 H 0.082 0.918 25 C -0.169 4.169 26 O -0.363 6.363 27 C 0.027 3.973 28 S 0.213 5.787 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.414 0.586 41 H 0.187 0.813 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.044 0.956 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 -3.233 -7.243 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 N -0.321 5.321 4 C -0.410 4.410 5 H 0.092 0.908 6 C -0.155 4.155 7 N -0.531 5.531 8 Si 0.671 3.329 9 H -0.195 1.195 10 H -0.229 1.229 11 H -0.175 1.175 12 C 0.048 3.952 13 H 0.096 0.904 14 C -0.215 4.215 15 C -0.022 4.022 16 N -0.345 5.345 17 C 0.374 3.626 18 O -0.432 6.432 19 C -0.412 4.412 20 C -0.048 4.048 21 N -0.160 5.160 22 C -0.246 4.246 23 C 0.107 3.893 24 H 0.099 0.901 25 C -0.228 4.228 26 O -0.281 6.281 27 C -0.070 4.070 28 S 0.470 5.530 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.252 0.748 41 H 0.204 0.796 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.062 0.938 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.365 -3.800 -8.055 16.902 hybrid contribution -0.117 -0.454 0.894 1.010 sum 14.248 -4.255 -7.161 16.504 Atomic orbital electron populations 1.22445 0.99322 0.99441 1.01736 1.21268 0.91890 0.86690 0.98861 1.44142 1.75367 1.11305 1.01296 1.18741 1.32125 1.00763 0.89393 0.90754 1.25672 0.97020 0.97405 0.95362 1.69837 1.42258 1.41764 0.99288 0.87794 0.82291 0.84331 0.78440 1.19524 1.22851 1.17530 1.20838 0.90710 0.96899 0.86803 0.90370 1.22212 0.99013 1.01534 0.98710 1.22134 0.85596 1.01602 0.92849 1.45777 1.08270 1.58372 1.22089 1.16683 0.81809 0.78569 0.85571 1.90782 1.84299 1.48593 1.19545 1.25836 1.00930 1.12448 1.02024 1.22407 0.95239 0.97642 0.89526 1.66026 1.00123 1.15335 1.34558 1.27313 1.00206 1.01269 0.95763 1.20448 0.86971 0.86643 0.95218 0.90062 1.22274 1.03320 0.97509 0.99705 1.88122 1.20600 1.39431 1.79925 1.22883 0.80969 1.02462 1.00645 1.83706 1.04120 1.50015 1.15127 0.93363 0.94722 0.92240 0.94729 0.92961 0.92521 0.92735 0.91971 0.93335 0.92090 0.91986 0.74832 0.79625 0.91149 0.91201 0.90418 0.89143 0.93774 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.89 37.16 0.37 -2.73 16 2 C 0.14 2.82 3.71 -4.04 -0.01 2.81 16 3 N -0.60 -12.58 1.55 -165.66 -0.26 -12.83 16 4 C -0.28 -7.04 9.10 -15.06 -0.14 -7.18 16 5 H 0.07 2.06 8.06 -52.49 -0.42 1.63 16 6 C 0.05 1.26 5.32 -17.43 -0.09 1.17 16 7 N -0.89 -25.59 13.97 55.49 0.78 -24.81 16 8 Si 0.84 19.89 24.13 -169.99 -4.10 15.79 16 9 H -0.27 -5.99 3.96 56.52 0.22 -5.76 16 10 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.25 -5.78 4.94 56.52 0.28 -5.50 16 12 C 0.16 2.73 2.81 -67.93 -0.19 2.54 16 13 H 0.08 1.40 7.91 -51.93 -0.41 0.99 16 14 C -0.16 -2.31 7.89 37.16 0.29 -2.02 16 15 C 0.10 1.81 5.11 -4.04 -0.02 1.79 16 16 N -0.69 -13.04 4.55 -61.62 -0.28 -13.32 16 17 C 0.59 11.36 7.78 -12.85 -0.10 11.26 16 18 O -0.55 -11.56 16.98 5.20 0.09 -11.47 16 19 C -0.29 -5.16 6.48 -37.10 -0.24 -5.40 16 20 C 0.11 2.00 8.65 -18.85 -0.16 1.84 16 21 N -0.45 -7.97 10.49 -11.50 -0.12 -8.09 16 22 C 0.03 0.45 6.28 -13.29 -0.08 0.36 16 23 C 0.17 1.93 3.23 -27.88 -0.09 1.84 16 24 H 0.08 0.68 7.78 -51.93 -0.40 0.27 16 25 C -0.17 -1.72 9.51 37.16 0.35 -1.37 16 26 O -0.36 -4.54 10.32 -35.23 -0.36 -4.90 16 27 C 0.03 0.21 10.82 101.05 1.09 1.31 16 28 S 0.21 3.07 23.02 -107.50 -2.47 0.60 16 29 H 0.05 0.79 5.58 -51.93 -0.29 0.50 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.67 6.74 -51.93 -0.35 0.32 16 33 H 0.05 1.19 4.13 -51.93 -0.21 0.97 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.05 0.80 6.34 -51.93 -0.33 0.47 16 36 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.12 7.08 -51.93 -0.37 0.75 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 8.09 5.00 -40.82 -0.20 7.88 16 41 H 0.19 3.49 6.64 -52.49 -0.35 3.14 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.27 7.87 -51.93 -0.41 -0.13 16 47 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -31.24 379.85 -7.42 -38.65 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.38 Total: 8.44 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.97 Total: 6.22 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.12 Total: -59.06 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.28 Total: -16.38 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.10 Total: 15.79 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.47 Total: 0.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.24 -7.42 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.367 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds