Wall clock time and date at job start Wed Apr 1 2020 01:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47029 * 2 1 4 4 C 1.36944 * 119.99702 * 89.70432 * 3 2 1 5 5 H 1.07997 * 119.99491 * 225.71983 * 4 3 2 6 6 C 1.38810 * 120.00096 * 45.99985 * 4 3 2 7 7 N 1.31615 * 120.00300 * 198.61851 * 6 4 3 8 8 Si 1.86811 * 119.99906 * 18.61299 * 6 4 3 9 9 H 1.48495 * 109.46875 * 93.48660 * 8 6 4 10 10 H 1.48502 * 109.46820 * 213.48298 * 8 6 4 11 11 H 1.48498 * 109.46813 * 333.48516 * 8 6 4 12 12 C 1.46494 * 120.00269 * 269.70669 * 3 2 1 13 13 H 1.09003 * 109.47227 * 171.61344 * 12 3 2 14 14 C 1.53002 * 109.46857 * 51.61524 * 12 3 2 15 15 C 1.52998 * 109.47146 * 291.61493 * 12 3 2 16 16 N 1.46496 * 109.47144 * 301.31016 * 15 12 3 17 17 C 1.34781 * 120.00107 * 179.77051 * 16 15 12 18 18 O 1.21689 * 119.99949 * 4.83248 * 17 16 15 19 19 C 1.46675 * 120.00005 * 184.84094 * 17 16 15 20 20 C 1.35669 * 126.13436 * 353.48346 * 19 17 16 21 21 N 1.30933 * 114.19242 * 179.79134 * 20 19 17 22 22 C 1.29427 * 117.36724 * 0.51817 * 21 20 19 23 23 C 1.50701 * 124.80908 * 179.73002 * 22 21 20 24 24 H 1.09002 * 109.47360 * 194.98114 * 23 22 21 25 25 C 1.52997 * 109.46754 * 74.97740 * 23 22 21 26 26 O 1.42902 * 109.47023 * 314.98201 * 23 22 21 27 27 C 1.42898 * 113.99913 * 209.99747 * 26 23 22 28 28 S 1.70960 * 110.38969 * 359.71400 * 22 21 20 29 29 H 1.08995 * 109.47225 * 65.51269 * 1 2 3 30 30 H 1.09003 * 109.46430 * 185.51605 * 1 2 3 31 31 H 1.08995 * 109.47047 * 305.51091 * 1 2 3 32 32 H 1.08995 * 109.47443 * 240.00617 * 2 1 3 33 33 H 1.08998 * 109.47526 * 119.99747 * 2 1 3 34 34 H 0.96997 * 120.00488 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47304 * 299.99774 * 14 12 3 36 36 H 1.08999 * 109.47205 * 60.00216 * 14 12 3 37 37 H 1.09005 * 109.47030 * 180.02562 * 14 12 3 38 38 H 1.09002 * 109.47119 * 61.30766 * 15 12 3 39 39 H 1.09004 * 109.46850 * 181.30737 * 15 12 3 40 40 H 0.96995 * 120.00141 * 359.75954 * 16 15 12 41 41 H 1.07997 * 122.89563 * 359.96383 * 20 19 17 42 42 H 1.08996 * 109.47099 * 60.00732 * 25 23 22 43 43 H 1.09004 * 109.47198 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.47493 * 300.00293 * 25 23 22 45 45 H 1.09004 * 109.47145 * 180.02562 * 27 26 23 46 46 H 1.09005 * 109.47217 * 300.00073 * 27 26 23 47 47 H 1.08998 * 109.47466 * 59.99902 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2408 2.0288 1.1860 5 1 1.8872 3.0399 1.3236 6 6 2.9257 1.3876 2.2090 7 7 2.8308 1.8322 3.4442 8 14 3.9821 -0.1064 1.8327 9 1 5.3839 0.3246 1.6001 10 1 3.9373 -1.0463 2.9816 11 1 3.4646 -0.7851 0.6175 12 6 2.2686 2.0697 -1.2686 13 1 2.4804 3.1214 -1.0757 14 6 1.0333 1.9542 -2.1639 15 6 3.4680 1.4281 -1.9691 16 7 4.6435 1.5109 -1.0988 17 6 5.8225 1.0024 -1.5085 18 8 5.9334 0.5538 -2.6343 19 6 6.9719 0.9895 -0.5975 20 6 7.0258 1.5634 0.6307 21 7 8.1699 1.4048 1.2473 22 6 9.0944 0.7459 0.6259 23 6 10.4708 0.4702 1.1742 24 1 11.1244 0.1405 0.3666 25 6 10.3852 -0.6240 2.2402 26 8 10.9989 1.6631 1.7574 27 6 12.4232 1.7602 1.6932 28 16 8.5331 0.2322 -0.9050 29 1 -0.3633 0.4259 -0.9352 30 1 -0.3632 -1.0230 0.0988 31 1 -0.3633 0.5969 0.8365 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3091 1.3840 4.1591 35 1 0.8215 0.9026 -2.3569 36 1 0.1788 2.4113 -1.6649 37 1 1.2196 2.4661 -3.1081 38 1 3.2472 0.3823 -2.1829 39 1 3.6686 1.9552 -2.9019 40 1 4.5734 1.9318 -0.2278 41 1 6.1957 2.1020 1.0633 42 1 9.9825 -1.5339 1.7953 43 1 11.3808 -0.8238 2.6365 44 1 9.7317 -0.2942 3.0478 45 1 12.7451 2.6927 2.1570 46 1 12.8690 0.9184 2.2232 47 1 12.7419 1.7434 0.6510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153362212.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:55 Heat of formation + Delta-G solvation = -26.396529 kcal Electronic energy + Delta-G solvation = -28589.185176 eV Core-core repulsion = 24706.572144 eV Total energy + Delta-G solvation = -3882.613033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45198 -40.48890 -39.06550 -38.77453 -35.61815 -34.22470 -33.62648 -32.57819 -30.95630 -30.62964 -27.92668 -27.30112 -26.61901 -25.53425 -24.13986 -23.95700 -22.62308 -21.26215 -20.51148 -19.50284 -18.81124 -18.52286 -17.42627 -17.30612 -17.02375 -16.87693 -16.54922 -16.32776 -15.89841 -15.69325 -15.33402 -15.12129 -14.84425 -14.55700 -14.37506 -14.19260 -13.95626 -13.66046 -13.62449 -13.34523 -13.26380 -13.13854 -13.05634 -12.85404 -12.70602 -12.47912 -12.38666 -12.03488 -11.96049 -11.76292 -11.61890 -11.47044 -11.09008 -10.93605 -10.74232 -10.60718 -10.54200 -10.16109 -9.94872 -8.61764 -8.19522 -5.68219 -0.99649 -0.09138 0.39309 1.19011 1.31858 1.48849 1.51368 1.99433 2.22462 2.43039 2.73007 2.91265 3.06778 3.33979 3.60588 3.66358 3.94339 3.98284 3.99851 4.04578 4.31612 4.38768 4.46353 4.55462 4.56177 4.59654 4.70582 4.72670 4.76461 4.79586 4.82207 4.83277 4.88249 5.00455 5.09113 5.17040 5.23245 5.29468 5.35179 5.49731 5.60587 5.97349 6.08596 6.28992 6.34778 6.48987 6.95711 7.05414 7.64389 8.12164 8.98410 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.003693 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.641307 B = 7580.885676 C = 8593.526885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 N -0.604 5.604 4 C -0.255 4.255 5 H 0.041 0.959 6 C 0.005 3.995 7 N -0.942 5.942 8 Si 0.898 3.102 9 H -0.255 1.255 10 H -0.328 1.328 11 H -0.238 1.238 12 C 0.154 3.846 13 H 0.072 0.928 14 C -0.147 4.147 15 C 0.108 3.892 16 N -0.698 5.698 17 C 0.591 3.409 18 O -0.571 6.571 19 C -0.322 4.322 20 C 0.105 3.895 21 N -0.484 5.484 22 C 0.036 3.964 23 C 0.163 3.837 24 H 0.120 0.880 25 C -0.167 4.167 26 O -0.396 6.396 27 C 0.020 3.980 28 S 0.276 5.724 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.259 0.741 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.408 0.592 41 H 0.170 0.830 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.454 -4.668 -9.826 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.008 3.992 3 N -0.328 5.328 4 C -0.385 4.385 5 H 0.059 0.941 6 C -0.193 4.193 7 N -0.584 5.584 8 Si 0.727 3.273 9 H -0.181 1.181 10 H -0.258 1.258 11 H -0.162 1.162 12 C 0.048 3.952 13 H 0.090 0.910 14 C -0.206 4.206 15 C -0.018 4.018 16 N -0.349 5.349 17 C 0.376 3.624 18 O -0.453 6.453 19 C -0.446 4.446 20 C -0.054 4.054 21 N -0.198 5.198 22 C -0.239 4.239 23 C 0.101 3.899 24 H 0.137 0.863 25 C -0.226 4.226 26 O -0.315 6.315 27 C -0.076 4.076 28 S 0.534 5.466 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.245 0.755 41 H 0.187 0.813 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.067 0.933 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.025 -5.237 -10.706 19.971 hybrid contribution -0.593 0.048 1.654 1.757 sum 15.432 -5.189 -9.053 18.628 Atomic orbital electron populations 1.22323 0.97390 1.00533 1.01734 1.21296 0.93495 0.85927 0.98442 1.44195 1.75713 1.11579 1.01299 1.18545 1.29915 0.99348 0.90710 0.94123 1.26095 0.98321 0.99853 0.95019 1.69963 1.44306 1.43852 1.00327 0.86946 0.81841 0.81139 0.77392 1.18097 1.25756 1.16182 1.20961 0.92426 0.96130 0.85711 0.91014 1.22111 0.96939 1.02362 0.99149 1.22150 0.84796 1.01546 0.93263 1.45901 1.08803 1.58198 1.21970 1.16814 0.82091 0.78028 0.85454 1.90758 1.84670 1.49646 1.20239 1.25869 1.02543 1.14220 1.01972 1.22221 0.95395 0.97846 0.89898 1.66059 1.00641 1.17417 1.35732 1.28101 1.01002 0.99003 0.95772 1.20803 0.85613 0.86740 0.96698 0.86269 1.22285 1.04457 0.97289 0.98561 1.88080 1.23212 1.39943 1.80287 1.23124 0.78741 1.03610 1.02148 1.83383 1.01175 1.48241 1.13792 0.91174 0.92580 0.94922 0.92860 0.95551 0.93160 0.92058 0.92570 0.90405 0.92355 0.89991 0.75485 0.81328 0.90152 0.88335 0.93340 0.88720 0.91863 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 9.89 71.98 0.71 -4.84 16 2 C 0.13 5.26 3.71 86.38 0.32 5.58 16 3 N -0.60 -25.13 1.55 -678.04 -1.05 -26.18 16 4 C -0.26 -13.11 9.10 84.03 0.76 -12.35 16 5 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 6 C 0.01 0.28 5.32 84.86 0.45 0.73 16 7 N -0.94 -56.59 13.97 21.65 0.30 -56.29 16 8 Si 0.90 42.76 24.13 68.60 1.66 44.42 16 9 H -0.25 -11.46 3.96 99.48 0.39 -11.07 16 10 H -0.33 -17.06 7.11 99.48 0.71 -16.35 16 11 H -0.24 -10.69 4.94 99.48 0.49 -10.20 16 12 C 0.15 5.20 2.81 44.99 0.13 5.33 16 13 H 0.07 2.52 7.91 -2.39 -0.02 2.50 16 14 C -0.15 -3.93 7.89 71.98 0.57 -3.36 16 15 C 0.11 3.54 5.11 86.38 0.44 3.98 16 16 N -0.70 -25.75 4.55 -467.08 -2.12 -27.87 16 17 C 0.59 22.18 7.78 86.45 0.67 22.85 16 18 O -0.57 -22.97 16.98 -4.31 -0.07 -23.04 16 19 C -0.32 -11.29 6.48 23.88 0.15 -11.13 16 20 C 0.11 3.89 8.65 84.23 0.73 4.62 16 21 N -0.48 -17.28 10.49 -190.30 -2.00 -19.27 16 22 C 0.04 1.01 6.28 88.46 0.56 1.57 16 23 C 0.16 3.31 3.23 29.85 0.10 3.40 16 24 H 0.12 1.48 7.78 -2.39 -0.02 1.47 16 25 C -0.17 -3.02 9.51 71.98 0.68 -2.34 16 26 O -0.40 -9.21 10.32 -148.98 -1.54 -10.75 16 27 C 0.02 0.26 10.82 113.37 1.23 1.48 16 28 S 0.28 7.36 23.02 -56.49 -1.30 6.06 16 29 H 0.07 2.10 5.58 -2.39 -0.01 2.09 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.92 6.74 -2.39 -0.02 1.90 16 33 H 0.03 1.18 4.13 -2.39 -0.01 1.17 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.06 1.57 6.34 -2.39 -0.02 1.56 16 36 H 0.06 1.58 7.89 -2.39 -0.02 1.57 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.98 7.08 -2.39 -0.02 1.96 16 39 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.41 16.09 5.00 -92.71 -0.46 15.62 16 41 H 0.17 6.64 6.64 -2.91 -0.02 6.62 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.10 1.20 7.87 -2.38 -0.02 1.18 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 0.58 7.87 -2.38 -0.02 0.56 16 47 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 Total: -1.00 -70.43 379.85 1.38 -69.06 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.01 Total: 28.33 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 7.50 Total: 15.53 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -4.87 Total: -129.61 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.61 Total: -33.79 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.66 Total: 44.42 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.30 Total: 6.06 kcal Total: -70.43 1.38 -69.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153362212.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.662 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds