Wall clock time and date at job start Wed Apr 1 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47073 * 2 1 4 4 C 1.36940 * 119.99487 * 84.12956 * 3 2 1 5 5 H 1.07992 * 120.00320 * 33.11218 * 4 3 2 6 6 C 1.38812 * 119.99584 * 212.83854 * 4 3 2 7 7 N 1.31617 * 119.99895 * 19.10921 * 6 4 3 8 8 Si 1.86796 * 119.99759 * 199.10807 * 6 4 3 9 9 H 1.48494 * 109.47486 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47141 * 120.00346 * 8 6 4 11 11 H 1.48505 * 109.46964 * 240.00110 * 8 6 4 12 12 C 1.46496 * 120.00219 * 264.12588 * 3 2 1 13 13 H 1.08998 * 109.47121 * 181.50079 * 12 3 2 14 14 C 1.52992 * 109.47227 * 61.49515 * 12 3 2 15 15 C 1.53000 * 109.47039 * 301.49577 * 12 3 2 16 16 N 1.46499 * 109.47628 * 305.00055 * 15 12 3 17 17 C 1.34770 * 120.00606 * 179.97438 * 16 15 12 18 18 O 1.21285 * 119.99882 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00383 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47033 * 180.02562 * 19 17 16 21 21 N 1.46506 * 109.46799 * 180.02562 * 20 19 17 22 22 C 1.36306 * 121.37671 * 269.73697 * 21 20 19 23 23 C 1.50700 * 121.64899 * 0.02637 * 22 21 20 24 24 C 1.32571 * 116.70499 * 179.79002 * 22 21 20 25 25 S 1.77232 * 105.31775 * 0.43135 * 24 22 21 26 26 C 1.34239 * 121.38008 * 90.02629 * 21 20 19 27 27 O 1.21828 * 127.06082 * 359.93735 * 26 21 20 28 28 H 1.09007 * 109.46583 * 299.99519 * 1 2 3 29 29 H 1.09001 * 109.47161 * 59.99328 * 1 2 3 30 30 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46583 * 240.00480 * 2 1 3 32 32 H 1.09000 * 109.47628 * 120.00923 * 2 1 3 33 33 H 0.96999 * 119.99850 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46860 * 60.00262 * 14 12 3 35 35 H 1.09000 * 109.47015 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.47530 * 300.00313 * 14 12 3 37 37 H 1.09000 * 109.47049 * 65.00239 * 15 12 3 38 38 H 1.08998 * 109.47271 * 184.99770 * 15 12 3 39 39 H 0.97000 * 119.99536 * 0.02562 * 16 15 12 40 40 H 1.09000 * 109.47104 * 300.00081 * 19 17 16 41 41 H 1.08999 * 109.46666 * 60.00149 * 19 17 16 42 42 H 1.09000 * 109.47206 * 299.99975 * 20 19 17 43 43 H 1.08993 * 109.47614 * 60.00190 * 20 19 17 44 44 H 1.09000 * 109.47191 * 89.99776 * 23 22 21 45 45 H 1.08999 * 109.46960 * 209.99821 * 23 22 21 46 46 H 1.08999 * 109.47074 * 329.99344 * 23 22 21 47 47 H 1.08000 * 127.33674 * 180.16632 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1322 2.0671 1.1798 5 1 2.3923 1.5419 2.0868 6 6 1.9187 3.4384 1.2087 7 7 1.2563 4.0220 0.2324 8 14 2.5715 4.4554 2.6330 9 1 3.2761 3.5681 3.5929 10 1 3.5178 5.4778 2.1185 11 1 1.4402 5.1291 3.3197 12 6 2.3849 2.0286 -1.2620 13 1 2.7480 3.0365 -1.0613 14 6 1.1582 2.1005 -2.1735 15 6 3.4849 1.2180 -1.9503 16 7 4.6135 1.0476 -1.0318 17 6 5.7045 0.3609 -1.4248 18 8 5.7523 -0.1157 -2.5390 19 6 6.8651 0.1852 -0.4797 20 6 7.9651 -0.6254 -1.1681 21 7 9.0932 -0.7967 -0.2492 22 6 10.1174 0.1018 -0.2074 23 6 10.1421 1.3147 -1.1014 24 6 11.0883 -0.1415 0.6619 25 16 10.6296 -1.6533 1.4652 26 6 9.1638 -1.8480 0.5826 27 8 8.3562 -2.7537 0.6913 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.1069 4.9802 0.2528 34 1 0.3746 2.6780 -1.6831 35 1 1.4309 2.5826 -3.1123 36 1 0.7951 1.0926 -2.3742 37 1 3.0939 0.2399 -2.2309 38 1 3.8199 1.7451 -2.8436 39 1 4.5751 1.4284 -0.1406 40 1 7.2565 1.1630 -0.1991 41 1 6.5297 -0.3420 0.4134 42 1 7.5741 -1.6033 -1.4491 43 1 8.3004 -0.0979 -2.0611 44 1 9.6462 2.1458 -0.5999 45 1 11.1755 1.5854 -1.3180 46 1 9.6225 1.0902 -2.0329 47 1 11.9727 0.4525 0.8393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153846574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:08 Heat of formation + Delta-G solvation = -26.002394 kcal Electronic energy + Delta-G solvation = -28237.630238 eV Core-core repulsion = 24355.034296 eV Total energy + Delta-G solvation = -3882.595942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25940 -39.32430 -37.75321 -36.98789 -33.86158 -33.52365 -31.91961 -31.54399 -30.78417 -28.49269 -28.34885 -25.95008 -24.58577 -23.94465 -23.08787 -21.64462 -20.54924 -19.92913 -19.29936 -18.28820 -17.57533 -17.05751 -16.51960 -16.13195 -15.66799 -15.39731 -15.09761 -14.66673 -14.60587 -14.36361 -13.99313 -13.92290 -13.64213 -13.50787 -13.08742 -12.93905 -12.77092 -12.47667 -12.34972 -11.95816 -11.66069 -11.62370 -11.45513 -11.41314 -11.34518 -11.28281 -11.09063 -10.88380 -10.52378 -10.32182 -10.24095 -9.98945 -9.89094 -9.65100 -9.54032 -9.50172 -8.59632 -8.50472 -8.17408 -6.74382 -5.93542 -3.39928 0.75654 1.14432 1.57392 1.95299 2.51584 2.90609 3.25640 3.36673 3.37206 3.64766 4.24657 4.37897 4.54873 4.63999 4.77718 5.00870 5.07598 5.15146 5.22264 5.23220 5.29163 5.33991 5.42358 5.53242 5.74504 5.84402 5.91190 6.06920 6.11998 6.27537 6.42148 6.47887 6.50413 6.52493 6.65613 6.68186 6.73911 6.95510 6.99412 7.12973 7.25435 7.42645 7.53821 7.73864 8.01310 8.37699 8.58588 9.10650 9.72310 10.29680 11.13383 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.002919 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.049657 B = 9591.424020 C =10264.479639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.582 5.582 4 C -0.264 4.264 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.179 3.821 13 H 0.096 0.904 14 C -0.146 4.146 15 C 0.101 3.899 16 N -0.699 5.699 17 C 0.513 3.487 18 O -0.561 6.561 19 C -0.158 4.158 20 C 0.118 3.882 21 N -0.532 5.532 22 C 0.106 3.894 23 C -0.105 4.105 24 C -0.243 4.243 25 S -0.007 6.007 26 C 0.480 3.520 27 O -0.468 6.468 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.031 0.969 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.412 0.588 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.698 -3.676 -2.550 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.072 3.928 13 H 0.114 0.886 14 C -0.205 4.205 15 C -0.025 4.025 16 N -0.349 5.349 17 C 0.297 3.703 18 O -0.441 6.441 19 C -0.199 4.199 20 C -0.007 4.007 21 N -0.253 5.253 22 C -0.005 4.005 23 C -0.164 4.164 24 C -0.381 4.381 25 S 0.236 5.764 26 C 0.162 3.838 27 O -0.347 6.347 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.249 0.751 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 17.689 -5.190 -2.314 18.579 hybrid contribution -0.576 1.651 0.267 1.769 sum 17.113 -3.539 -2.047 17.595 Atomic orbital electron populations 1.22375 0.99694 0.98326 1.02129 1.20798 0.91983 0.87569 0.98023 1.43977 1.73761 1.09780 1.02898 1.19140 1.41939 0.90167 0.88074 0.91786 1.25116 0.97947 0.98386 0.97297 1.70032 1.39640 1.09918 1.33461 0.86382 0.78577 0.80384 0.82353 1.20203 1.21567 1.21692 1.20447 0.90491 0.96595 0.85286 0.88582 1.22131 1.00782 0.99675 0.97895 1.22152 0.87411 1.00769 0.92147 1.45946 1.16088 1.53771 1.19093 1.20147 0.83808 0.78665 0.87661 1.90672 1.81857 1.50009 1.21602 1.21946 0.95004 1.02662 1.00257 1.21646 0.84302 1.03527 0.91228 1.46172 1.21203 1.21456 1.36469 1.19497 0.88372 0.93487 0.99103 1.20848 1.04667 0.92798 0.98079 1.24868 1.05847 1.02564 1.04844 1.85148 1.20493 1.24938 1.45815 1.21606 0.92515 0.84831 0.84842 1.90995 1.43956 1.33306 1.66451 0.92856 0.93167 0.95388 0.94565 0.94599 0.93634 0.90012 0.95117 0.94975 0.92765 0.92706 0.75144 0.88488 0.88266 0.87845 0.87886 0.89331 0.89133 0.90128 0.79200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.01 37.16 0.37 -2.85 16 2 C 0.14 2.87 5.66 -4.04 -0.02 2.84 16 3 N -0.58 -12.77 1.83 -165.67 -0.30 -13.07 16 4 C -0.26 -6.40 9.34 -15.06 -0.14 -6.54 16 5 H 0.06 1.59 7.90 -52.49 -0.41 1.17 16 6 C 0.01 0.32 4.79 -17.43 -0.08 0.24 16 7 N -0.89 -23.00 10.57 55.49 0.59 -22.41 16 8 Si 0.89 19.84 29.59 -169.99 -5.03 14.81 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.18 3.70 1.93 -67.94 -0.13 3.57 16 13 H 0.10 2.25 6.14 -51.93 -0.32 1.93 16 14 C -0.15 -2.92 8.19 37.15 0.30 -2.61 16 15 C 0.10 1.85 4.90 -4.04 -0.02 1.83 16 16 N -0.70 -11.85 5.39 -60.29 -0.32 -12.18 16 17 C 0.51 8.11 7.83 -10.99 -0.09 8.02 16 18 O -0.56 -10.37 15.98 5.55 0.09 -10.28 16 19 C -0.16 -1.93 6.02 -27.88 -0.17 -2.10 16 20 C 0.12 1.36 4.56 -4.04 -0.02 1.34 16 21 N -0.53 -5.85 2.60 -117.28 -0.31 -6.15 16 22 C 0.11 0.88 6.59 -82.51 -0.54 0.33 16 23 C -0.10 -0.56 9.69 36.01 0.35 -0.22 16 24 C -0.24 -1.82 11.25 28.83 0.32 -1.50 16 25 S -0.01 -0.07 22.97 -107.50 -2.47 -2.54 16 26 C 0.48 6.40 8.27 53.81 0.45 6.85 16 27 O -0.47 -7.87 17.55 5.07 0.09 -7.78 16 28 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 29 H 0.05 1.00 6.07 -51.93 -0.32 0.68 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.70 6.46 -51.92 -0.34 0.36 16 32 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.08 1.88 7.24 -51.93 -0.38 1.50 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.60 6.57 -51.93 -0.34 0.26 16 37 H 0.05 1.04 6.82 -51.93 -0.35 0.68 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.41 7.13 7.97 -40.82 -0.33 6.80 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.10 1.40 7.76 -51.93 -0.40 0.99 16 43 H 0.10 1.03 6.07 -51.93 -0.32 0.71 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.30 8.10 -51.93 -0.42 -0.12 16 46 H 0.08 0.46 6.18 -51.93 -0.32 0.14 16 47 H 0.19 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -29.29 391.59 -8.36 -37.65 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.18 Total: 6.87 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 0.58 Total: 9.19 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.35 Total: -53.81 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.07 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.47 Total: -2.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.29 -8.36 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153846574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.650 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds