Wall clock time and date at job start Wed Apr 1 2020 01:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47073 * 2 1 4 4 C 1.36940 * 119.99487 * 84.12956 * 3 2 1 5 5 H 1.07992 * 120.00320 * 33.11218 * 4 3 2 6 6 C 1.38812 * 119.99584 * 212.83854 * 4 3 2 7 7 N 1.31617 * 119.99895 * 19.10921 * 6 4 3 8 8 Si 1.86796 * 119.99759 * 199.10807 * 6 4 3 9 9 H 1.48494 * 109.47486 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47141 * 120.00346 * 8 6 4 11 11 H 1.48505 * 109.46964 * 240.00110 * 8 6 4 12 12 C 1.46496 * 120.00219 * 264.12588 * 3 2 1 13 13 H 1.08998 * 109.47121 * 181.50079 * 12 3 2 14 14 C 1.52992 * 109.47227 * 61.49515 * 12 3 2 15 15 C 1.53000 * 109.47039 * 301.49577 * 12 3 2 16 16 N 1.46499 * 109.47628 * 305.00055 * 15 12 3 17 17 C 1.34770 * 120.00606 * 179.97438 * 16 15 12 18 18 O 1.21285 * 119.99882 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00383 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47033 * 180.02562 * 19 17 16 21 21 N 1.46506 * 109.46799 * 180.02562 * 20 19 17 22 22 C 1.36306 * 121.37671 * 269.73697 * 21 20 19 23 23 C 1.50700 * 121.64899 * 0.02637 * 22 21 20 24 24 C 1.32571 * 116.70499 * 179.79002 * 22 21 20 25 25 S 1.77232 * 105.31775 * 0.43135 * 24 22 21 26 26 C 1.34239 * 121.38008 * 90.02629 * 21 20 19 27 27 O 1.21828 * 127.06082 * 359.93735 * 26 21 20 28 28 H 1.09007 * 109.46583 * 299.99519 * 1 2 3 29 29 H 1.09001 * 109.47161 * 59.99328 * 1 2 3 30 30 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46583 * 240.00480 * 2 1 3 32 32 H 1.09000 * 109.47628 * 120.00923 * 2 1 3 33 33 H 0.96999 * 119.99850 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46860 * 60.00262 * 14 12 3 35 35 H 1.09000 * 109.47015 * 179.97438 * 14 12 3 36 36 H 1.08998 * 109.47530 * 300.00313 * 14 12 3 37 37 H 1.09000 * 109.47049 * 65.00239 * 15 12 3 38 38 H 1.08998 * 109.47271 * 184.99770 * 15 12 3 39 39 H 0.97000 * 119.99536 * 0.02562 * 16 15 12 40 40 H 1.09000 * 109.47104 * 300.00081 * 19 17 16 41 41 H 1.08999 * 109.46666 * 60.00149 * 19 17 16 42 42 H 1.09000 * 109.47206 * 299.99975 * 20 19 17 43 43 H 1.08993 * 109.47614 * 60.00190 * 20 19 17 44 44 H 1.09000 * 109.47191 * 89.99776 * 23 22 21 45 45 H 1.08999 * 109.46960 * 209.99821 * 23 22 21 46 46 H 1.08999 * 109.47074 * 329.99344 * 23 22 21 47 47 H 1.08000 * 127.33674 * 180.16632 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1322 2.0671 1.1798 5 1 2.3923 1.5419 2.0868 6 6 1.9187 3.4384 1.2087 7 7 1.2563 4.0220 0.2324 8 14 2.5715 4.4554 2.6330 9 1 3.2761 3.5681 3.5929 10 1 3.5178 5.4778 2.1185 11 1 1.4402 5.1291 3.3197 12 6 2.3849 2.0286 -1.2620 13 1 2.7480 3.0365 -1.0613 14 6 1.1582 2.1005 -2.1735 15 6 3.4849 1.2180 -1.9503 16 7 4.6135 1.0476 -1.0318 17 6 5.7045 0.3609 -1.4248 18 8 5.7523 -0.1157 -2.5390 19 6 6.8651 0.1852 -0.4797 20 6 7.9651 -0.6254 -1.1681 21 7 9.0932 -0.7967 -0.2492 22 6 10.1174 0.1018 -0.2074 23 6 10.1421 1.3147 -1.1014 24 6 11.0883 -0.1415 0.6619 25 16 10.6296 -1.6533 1.4652 26 6 9.1638 -1.8480 0.5826 27 8 8.3562 -2.7537 0.6913 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.1069 4.9802 0.2528 34 1 0.3746 2.6780 -1.6831 35 1 1.4309 2.5826 -3.1123 36 1 0.7951 1.0926 -2.3742 37 1 3.0939 0.2399 -2.2309 38 1 3.8199 1.7451 -2.8436 39 1 4.5751 1.4284 -0.1406 40 1 7.2565 1.1630 -0.1991 41 1 6.5297 -0.3420 0.4134 42 1 7.5741 -1.6033 -1.4491 43 1 8.3004 -0.0979 -2.0611 44 1 9.6462 2.1458 -0.5999 45 1 11.1755 1.5854 -1.3180 46 1 9.6225 1.0902 -2.0329 47 1 11.9727 0.4525 0.8393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153846574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:07 Heat of formation + Delta-G solvation = -43.202295 kcal Electronic energy + Delta-G solvation = -28238.376081 eV Core-core repulsion = 24355.034296 eV Total energy + Delta-G solvation = -3883.341785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.12703 -40.66031 -38.74599 -38.59025 -35.35043 -34.45062 -33.74064 -32.62574 -32.04277 -30.12611 -29.26366 -27.16869 -25.93068 -25.46042 -24.02050 -23.29062 -21.47673 -21.20807 -20.92109 -19.05545 -18.91729 -18.46852 -17.59290 -17.27197 -16.96191 -16.73575 -16.39546 -16.17061 -15.94968 -15.38266 -15.22746 -14.88334 -14.64220 -14.55258 -14.30625 -14.29704 -13.94421 -13.71696 -13.65298 -13.26900 -13.15514 -13.05578 -12.98802 -12.83257 -12.64532 -12.41424 -12.27854 -12.19470 -12.06399 -12.05685 -11.76810 -11.32018 -11.24567 -11.23392 -10.97791 -10.58695 -10.46431 -9.94015 -8.96304 -8.55810 -7.82554 -5.30178 -0.12806 0.37765 0.86591 1.11746 1.47780 1.54617 1.61173 1.62130 1.68015 2.40091 2.55432 3.32324 3.53025 3.63550 3.64131 3.70542 3.95668 4.18966 4.24285 4.31891 4.44591 4.45117 4.52111 4.58069 4.66233 4.73532 4.78503 4.80549 4.84188 4.88552 4.89177 5.00529 5.02838 5.08709 5.15761 5.31044 5.32136 5.51794 5.58107 5.73805 5.74589 5.75621 5.89745 6.22926 6.49697 6.65758 7.22853 7.26846 7.91942 8.44765 9.22010 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.002919 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.049657 B = 9591.424020 C =10264.479639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.058 0.942 6 C -0.026 4.026 7 N -0.910 5.910 8 Si 0.949 3.051 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.302 1.302 12 C 0.186 3.814 13 H 0.070 0.930 14 C -0.136 4.136 15 C 0.113 3.887 16 N -0.702 5.702 17 C 0.515 3.485 18 O -0.586 6.586 19 C -0.145 4.145 20 C 0.123 3.877 21 N -0.530 5.530 22 C 0.090 3.910 23 C -0.102 4.102 24 C -0.222 4.222 25 S -0.002 6.002 26 C 0.458 3.542 27 O -0.523 6.523 28 H 0.028 0.972 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.248 0.752 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.411 0.589 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.077 0.923 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.045 -2.852 -2.594 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.394 4.394 5 H 0.076 0.924 6 C -0.224 4.224 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.230 1.230 12 C 0.079 3.921 13 H 0.088 0.912 14 C -0.195 4.195 15 C -0.012 4.012 16 N -0.351 5.351 17 C 0.302 3.698 18 O -0.468 6.468 19 C -0.185 4.185 20 C -0.002 4.002 21 N -0.250 5.250 22 C -0.019 4.019 23 C -0.161 4.161 24 C -0.359 4.359 25 S 0.241 5.759 26 C 0.142 3.858 27 O -0.407 6.407 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.143 0.857 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.115 0.885 45 H 0.136 0.864 46 H 0.096 0.904 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 20.084 -4.347 -2.359 20.684 hybrid contribution -1.238 1.379 0.286 1.875 sum 18.846 -2.968 -2.073 19.191 Atomic orbital electron populations 1.22250 0.99072 0.99681 1.00528 1.20846 0.92403 0.86664 0.98455 1.44079 1.74114 1.10231 1.02759 1.19249 1.41039 0.90409 0.88674 0.92442 1.25627 0.98475 0.99183 0.99139 1.70157 1.40841 1.09573 1.34853 0.85516 0.77493 0.78996 0.80155 1.19554 1.21453 1.22987 1.20312 0.91279 0.95496 0.85045 0.91221 1.21984 0.99597 0.99784 0.98172 1.21868 0.87214 0.99922 0.92245 1.45940 1.16176 1.54215 1.18790 1.20622 0.84028 0.77463 0.87692 1.90661 1.82338 1.50838 1.22989 1.21858 0.93766 1.04116 0.98804 1.21512 0.84509 1.02190 0.91970 1.46191 1.21602 1.21460 1.35714 1.20032 0.87696 0.93971 1.00176 1.20978 1.06594 0.91372 0.97164 1.25438 1.06497 1.00769 1.03168 1.85144 1.18521 1.26944 1.45241 1.22064 0.93181 0.84958 0.85616 1.90951 1.46089 1.35239 1.68389 0.95237 0.93854 0.92546 0.93478 0.94731 0.94239 0.93127 0.93396 0.94050 0.93294 0.92086 0.75257 0.85705 0.89139 0.90482 0.85992 0.88472 0.86418 0.90449 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.96 10.01 71.98 0.72 -5.24 16 2 C 0.14 5.62 5.66 86.38 0.49 6.11 16 3 N -0.59 -25.79 1.83 -678.05 -1.24 -27.03 16 4 C -0.26 -12.80 9.34 84.03 0.78 -12.01 16 5 H 0.06 2.84 7.90 -2.91 -0.02 2.82 16 6 C -0.03 -1.30 4.79 84.86 0.41 -0.90 16 7 N -0.91 -47.70 10.57 21.65 0.23 -47.47 16 8 Si 0.95 40.83 29.59 68.60 2.03 42.86 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 12 C 0.19 7.64 1.93 44.99 0.09 7.73 16 13 H 0.07 3.28 6.14 -2.39 -0.01 3.27 16 14 C -0.14 -5.42 8.19 71.98 0.59 -4.83 16 15 C 0.11 4.07 4.90 86.38 0.42 4.50 16 16 N -0.70 -23.25 5.39 -463.06 -2.49 -25.75 16 17 C 0.52 15.85 7.83 87.66 0.69 16.54 16 18 O -0.59 -21.28 15.98 -3.05 -0.05 -21.32 16 19 C -0.14 -3.39 6.02 29.85 0.18 -3.21 16 20 C 0.12 2.76 4.56 86.38 0.39 3.15 16 21 N -0.53 -11.04 2.60 -643.43 -1.68 -12.71 16 22 C 0.09 1.22 6.59 40.71 0.27 1.49 16 23 C -0.10 -0.71 9.69 71.24 0.69 -0.02 16 24 C -0.22 -2.54 11.25 66.67 0.75 -1.79 16 25 S 0.00 -0.03 22.97 -56.49 -1.30 -1.33 16 26 C 0.46 12.26 8.27 129.88 1.07 13.33 16 27 O -0.52 -18.46 17.55 -4.76 -0.08 -18.54 16 28 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.04 1.69 6.07 -2.39 -0.01 1.68 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.76 6.46 -2.38 -0.02 1.74 16 32 H 0.03 1.37 8.09 -2.39 -0.02 1.35 16 33 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 34 H 0.05 2.34 7.24 -2.39 -0.02 2.32 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.53 6.57 -2.39 -0.02 1.52 16 37 H 0.05 1.82 6.82 -2.39 -0.02 1.80 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.41 13.94 7.97 -92.71 -0.74 13.20 16 40 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.15 7.76 -2.39 -0.02 2.13 16 43 H 0.12 2.23 6.07 -2.39 -0.01 2.22 16 44 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.12 0.21 8.10 -2.39 -0.02 0.19 16 46 H 0.08 0.62 6.18 -2.39 -0.01 0.61 16 47 H 0.23 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -65.05 391.59 3.21 -61.84 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.25 Total: 24.58 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 7.54 Total: 24.87 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -5.18 Total: -112.96 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.13 Total: -39.86 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.30 Total: -1.33 kcal Total: -65.05 3.21 -61.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153846574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.634 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds