Wall clock time and date at job start Wed Apr 1 2020 01:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47395 * 2 1 4 4 C 1.36937 * 119.99689 * 275.91231 * 3 2 1 5 5 H 1.07997 * 120.00204 * 34.08224 * 4 3 2 6 6 C 1.38810 * 120.00098 * 214.07477 * 4 3 2 7 7 N 1.31627 * 119.99789 * 17.04995 * 6 4 3 8 8 Si 1.86791 * 120.00464 * 197.05228 * 6 4 3 9 9 H 1.48509 * 109.46985 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47569 * 119.99813 * 8 6 4 11 11 H 1.48501 * 109.47256 * 240.00356 * 8 6 4 12 12 C 1.46496 * 119.99840 * 95.91478 * 3 2 1 13 13 H 1.09001 * 109.46665 * 177.14642 * 12 3 2 14 14 C 1.52994 * 109.47531 * 57.14588 * 12 3 2 15 15 C 1.53001 * 109.47146 * 297.14070 * 12 3 2 16 16 N 1.46496 * 109.47452 * 305.00570 * 15 12 3 17 17 C 1.34777 * 120.00036 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99980 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99895 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.46997 * 179.97438 * 19 17 16 21 21 C 1.33639 * 122.74687 * 124.73298 * 20 19 17 22 22 S 1.76200 * 107.92089 * 179.97438 * 21 20 19 23 23 C 1.70972 * 90.28409 * 0.27800 * 22 21 20 24 24 C 1.50699 * 124.91644 * 179.84086 * 23 22 21 25 25 O 1.42904 * 109.47091 * 269.99881 * 24 23 22 26 26 C 1.42900 * 113.99754 * 179.97438 * 25 24 23 27 27 N 1.29022 * 110.16821 * 359.83624 * 23 22 21 28 28 H 1.08997 * 109.46794 * 59.99692 * 1 2 3 29 29 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46805 * 300.00355 * 1 2 3 31 31 H 1.09011 * 109.46715 * 120.00093 * 2 1 3 32 32 H 1.08994 * 109.46898 * 239.99605 * 2 1 3 33 33 H 0.96994 * 119.99936 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47155 * 59.99736 * 14 12 3 35 35 H 1.09003 * 109.47520 * 179.97438 * 14 12 3 36 36 H 1.09001 * 109.47190 * 299.99732 * 14 12 3 37 37 H 1.09005 * 109.47070 * 65.00529 * 15 12 3 38 38 H 1.09005 * 109.47128 * 184.99939 * 15 12 3 39 39 H 0.97003 * 119.99937 * 359.97438 * 16 15 12 40 40 H 1.08991 * 109.47166 * 300.00332 * 19 17 16 41 41 H 1.09004 * 109.46845 * 60.00222 * 19 17 16 42 42 H 1.08000 * 126.03900 * 0.04209 * 21 20 19 43 43 H 1.09002 * 109.47206 * 29.99307 * 24 23 22 44 44 H 1.08998 * 109.47551 * 149.99789 * 24 23 22 45 45 H 1.09000 * 109.47151 * 299.99232 * 26 25 24 46 46 H 1.08995 * 109.47420 * 60.00079 * 26 25 24 47 47 H 1.09007 * 109.46614 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1315 2.0674 -1.1796 5 1 1.4233 1.8926 -1.9761 6 6 3.1562 2.9878 -1.3517 7 7 4.1992 2.9692 -0.5489 8 14 3.0553 4.2526 -2.7225 9 1 1.7915 4.0629 -3.4790 10 1 3.0834 5.6180 -2.1394 11 1 4.2108 4.0821 -3.6395 12 6 2.3859 2.0282 1.2620 13 1 2.7714 3.0273 1.0591 14 6 3.4622 1.1993 1.9656 15 6 1.1520 2.1305 2.1608 16 7 0.0792 2.8211 1.4409 17 6 -1.1106 3.0266 2.0398 18 8 -1.2933 2.6393 3.1745 19 6 -2.2140 3.7376 1.2994 20 6 -3.4297 3.8371 2.1843 21 6 -4.0244 4.9999 2.4676 22 16 -5.3944 4.6650 3.5239 23 6 -5.0264 2.9958 3.4860 24 6 -5.8009 1.9252 4.2105 25 8 -5.2486 1.7380 5.5151 26 6 -5.9144 0.7390 6.2902 27 7 -3.9898 2.7854 2.7472 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 4.9154 3.6121 -0.6694 34 1 4.3413 1.1264 1.3252 35 1 3.7359 1.6809 2.9044 36 1 3.0766 0.2001 2.1685 37 1 0.8190 1.1297 2.4362 38 1 1.4040 2.6901 3.0616 39 1 0.2252 3.1306 0.5333 40 1 -1.8810 4.7385 1.0248 41 1 -2.4658 3.1785 0.3982 42 1 -3.7197 5.9728 2.1113 43 1 -6.8445 2.2277 4.2978 44 1 -5.7389 0.9910 3.6523 45 1 -6.9601 1.0174 6.4207 46 1 -5.8551 -0.2198 5.7753 47 1 -5.4354 0.6573 7.2660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156299774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:05 Heat of formation + Delta-G solvation = -13.488379 kcal Electronic energy + Delta-G solvation = -28115.568620 eV Core-core repulsion = 24233.515327 eV Total energy + Delta-G solvation = -3882.053293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.22414 -38.80158 -37.94016 -36.78424 -33.50575 -32.64019 -31.86705 -31.03182 -29.29590 -28.17028 -27.90211 -26.22358 -25.18354 -23.91513 -22.83400 -21.63361 -20.11006 -19.66040 -19.20567 -17.87647 -16.96621 -16.80390 -16.38498 -16.02870 -15.85603 -15.49110 -14.94555 -14.67001 -14.37346 -14.22869 -13.95063 -13.61099 -13.40795 -12.91199 -12.72283 -12.62939 -12.48687 -12.41880 -12.22264 -11.82687 -11.78476 -11.66260 -11.52310 -11.30947 -11.05013 -10.94420 -10.81102 -10.62741 -10.25644 -10.04314 -10.02861 -9.62843 -9.60894 -9.48042 -9.40327 -9.27697 -8.79695 -8.51139 -8.25436 -6.63654 -5.87457 -3.37122 0.57014 1.27653 1.63302 2.65437 3.23079 3.29607 3.39694 3.40242 3.56622 3.94072 4.13259 4.41864 4.64926 4.87054 5.01504 5.05826 5.10380 5.16837 5.22713 5.27511 5.40532 5.42532 5.47714 5.49965 5.72508 5.97048 6.07287 6.11739 6.26513 6.32614 6.43603 6.54106 6.58467 6.67006 6.72449 6.79318 6.86783 6.95893 7.18473 7.21783 7.50786 7.59053 7.76673 7.77166 8.28500 8.45276 8.89846 9.17087 9.78736 10.36892 11.18633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.002849 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.009403 B = 9824.158124 C =10833.866167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.175 3.825 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.703 5.703 17 C 0.509 3.491 18 O -0.540 6.540 19 C -0.071 4.071 20 C 0.096 3.904 21 C -0.252 4.252 22 S 0.123 5.877 23 C 0.041 3.959 24 C 0.143 3.857 25 O -0.379 6.379 26 C 0.032 3.968 27 N -0.420 5.420 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.254 0.746 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.410 0.590 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.180 0.820 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.042 0.958 46 H 0.045 0.955 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.172 1.574 7.708 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.390 4.390 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.067 3.933 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.355 5.355 17 C 0.293 3.707 18 O -0.417 6.417 19 C -0.114 4.114 20 C -0.037 4.037 21 C -0.391 4.391 22 S 0.378 5.622 23 C -0.238 4.238 24 C 0.063 3.937 25 O -0.297 6.297 26 C -0.064 4.064 27 N -0.135 5.135 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.197 0.803 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.573 1.545 9.017 21.605 hybrid contribution 0.736 0.620 -1.756 2.002 sum -18.837 2.165 7.261 20.304 Atomic orbital electron populations 1.22415 0.99923 0.98940 1.01516 1.20768 0.91716 0.87467 0.98661 1.43870 1.75879 1.08290 1.02289 1.19120 1.07677 1.18589 0.93652 0.91868 1.25182 0.94543 1.01445 0.97812 1.70018 1.07267 1.36301 1.39684 0.86344 0.77630 0.81580 0.81909 1.20165 1.21558 1.21750 1.20517 0.89112 0.99358 0.84305 0.88085 1.22001 1.01060 0.98181 0.99106 1.22119 0.89133 0.95615 0.95204 1.45908 1.12185 1.58420 1.18974 1.20131 0.83253 0.80293 0.87044 1.90707 1.81336 1.51226 1.18451 1.20282 0.90024 1.03260 0.97817 1.19637 0.97906 0.86855 0.99334 1.26864 1.01718 1.03477 1.07039 1.83726 1.28570 1.05011 1.44918 1.26454 0.98231 0.97001 1.02106 1.20734 0.93627 0.95348 0.83987 1.88018 1.57485 1.58775 1.25449 1.22790 0.96788 0.90830 0.96025 1.65937 1.05928 1.33644 1.08038 0.93531 0.94955 0.92916 0.94507 0.94217 0.93621 0.90679 0.94748 0.95003 0.93026 0.93300 0.75364 0.87412 0.87201 0.80309 0.91161 0.90134 0.93922 0.93616 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.95 37.16 0.37 -2.76 16 2 C 0.14 2.88 5.75 -4.04 -0.02 2.86 16 3 N -0.58 -13.11 1.88 -165.67 -0.31 -13.42 16 4 C -0.26 -6.42 9.07 -15.06 -0.14 -6.55 16 5 H 0.06 1.57 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.26 4.86 -17.43 -0.08 0.17 16 7 N -0.89 -23.60 10.90 55.49 0.61 -23.00 16 8 Si 0.90 20.04 29.59 -169.99 -5.03 15.01 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 C 0.17 3.77 1.95 -67.94 -0.13 3.64 16 13 H 0.10 2.47 5.94 -51.93 -0.31 2.17 16 14 C -0.14 -2.99 9.05 37.15 0.34 -2.65 16 15 C 0.11 2.09 4.36 -4.04 -0.02 2.07 16 16 N -0.70 -13.01 4.28 -60.29 -0.26 -13.27 16 17 C 0.51 9.29 7.75 -10.98 -0.09 9.21 16 18 O -0.54 -11.92 15.44 5.55 0.09 -11.84 16 19 C -0.07 -1.00 6.19 -29.03 -0.18 -1.18 16 20 C 0.10 1.42 5.64 -84.23 -0.47 0.94 16 21 C -0.25 -3.01 11.07 29.12 0.32 -2.69 16 22 S 0.12 1.35 23.18 -107.50 -2.49 -1.14 16 23 C 0.04 0.56 7.02 -13.46 -0.09 0.46 16 24 C 0.14 1.57 6.51 36.01 0.23 1.80 16 25 O -0.38 -4.82 10.69 -35.23 -0.38 -5.19 16 26 C 0.03 0.26 11.01 101.05 1.11 1.38 16 27 N -0.42 -6.91 9.68 -8.06 -0.08 -6.99 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.03 5.32 -51.93 -0.28 0.75 16 31 H 0.04 0.74 6.29 -51.92 -0.33 0.41 16 32 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.07 1.74 7.69 -51.93 -0.40 1.35 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.61 6.56 -51.93 -0.34 0.27 16 37 H 0.05 1.08 6.98 -51.93 -0.36 0.71 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.41 7.58 7.74 -40.82 -0.32 7.27 16 40 H 0.11 1.20 8.03 -51.93 -0.42 0.78 16 41 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -31.64 395.44 -8.11 -39.75 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.37 Total: 7.44 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 1.15 Total: 6.70 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.04 Total: -56.68 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.29 Total: -17.03 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.64 -8.11 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156299774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.262 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds