Wall clock time and date at job start Wed Apr 1 2020 01:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47395 * 2 1 4 4 C 1.36937 * 119.99689 * 275.91231 * 3 2 1 5 5 H 1.07997 * 120.00204 * 34.08224 * 4 3 2 6 6 C 1.38810 * 120.00098 * 214.07477 * 4 3 2 7 7 N 1.31627 * 119.99789 * 17.04995 * 6 4 3 8 8 Si 1.86791 * 120.00464 * 197.05228 * 6 4 3 9 9 H 1.48509 * 109.46985 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47569 * 119.99813 * 8 6 4 11 11 H 1.48501 * 109.47256 * 240.00356 * 8 6 4 12 12 C 1.46496 * 119.99840 * 95.91478 * 3 2 1 13 13 H 1.09001 * 109.46665 * 177.14642 * 12 3 2 14 14 C 1.52994 * 109.47531 * 57.14588 * 12 3 2 15 15 C 1.53001 * 109.47146 * 297.14070 * 12 3 2 16 16 N 1.46496 * 109.47452 * 305.00570 * 15 12 3 17 17 C 1.34777 * 120.00036 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99980 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99895 * 179.97438 * 17 16 15 20 20 C 1.50698 * 109.46997 * 179.97438 * 19 17 16 21 21 C 1.33639 * 122.74687 * 124.73298 * 20 19 17 22 22 S 1.76200 * 107.92089 * 179.97438 * 21 20 19 23 23 C 1.70972 * 90.28409 * 0.27800 * 22 21 20 24 24 C 1.50699 * 124.91644 * 179.84086 * 23 22 21 25 25 O 1.42904 * 109.47091 * 269.99881 * 24 23 22 26 26 C 1.42900 * 113.99754 * 179.97438 * 25 24 23 27 27 N 1.29022 * 110.16821 * 359.83624 * 23 22 21 28 28 H 1.08997 * 109.46794 * 59.99692 * 1 2 3 29 29 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46805 * 300.00355 * 1 2 3 31 31 H 1.09011 * 109.46715 * 120.00093 * 2 1 3 32 32 H 1.08994 * 109.46898 * 239.99605 * 2 1 3 33 33 H 0.96994 * 119.99936 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47155 * 59.99736 * 14 12 3 35 35 H 1.09003 * 109.47520 * 179.97438 * 14 12 3 36 36 H 1.09001 * 109.47190 * 299.99732 * 14 12 3 37 37 H 1.09005 * 109.47070 * 65.00529 * 15 12 3 38 38 H 1.09005 * 109.47128 * 184.99939 * 15 12 3 39 39 H 0.97003 * 119.99937 * 359.97438 * 16 15 12 40 40 H 1.08991 * 109.47166 * 300.00332 * 19 17 16 41 41 H 1.09004 * 109.46845 * 60.00222 * 19 17 16 42 42 H 1.08000 * 126.03900 * 0.04209 * 21 20 19 43 43 H 1.09002 * 109.47206 * 29.99307 * 24 23 22 44 44 H 1.08998 * 109.47551 * 149.99789 * 24 23 22 45 45 H 1.09000 * 109.47151 * 299.99232 * 26 25 24 46 46 H 1.08995 * 109.47420 * 60.00079 * 26 25 24 47 47 H 1.09007 * 109.46614 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1315 2.0674 -1.1796 5 1 1.4233 1.8926 -1.9761 6 6 3.1562 2.9878 -1.3517 7 7 4.1992 2.9692 -0.5489 8 14 3.0553 4.2526 -2.7225 9 1 1.7915 4.0629 -3.4790 10 1 3.0834 5.6180 -2.1394 11 1 4.2108 4.0821 -3.6395 12 6 2.3859 2.0282 1.2620 13 1 2.7714 3.0273 1.0591 14 6 3.4622 1.1993 1.9656 15 6 1.1520 2.1305 2.1608 16 7 0.0792 2.8211 1.4409 17 6 -1.1106 3.0266 2.0398 18 8 -1.2933 2.6393 3.1745 19 6 -2.2140 3.7376 1.2994 20 6 -3.4297 3.8371 2.1843 21 6 -4.0244 4.9999 2.4676 22 16 -5.3944 4.6650 3.5239 23 6 -5.0264 2.9958 3.4860 24 6 -5.8009 1.9252 4.2105 25 8 -5.2486 1.7380 5.5151 26 6 -5.9144 0.7390 6.2902 27 7 -3.9898 2.7854 2.7472 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 4.9154 3.6121 -0.6694 34 1 4.3413 1.1264 1.3252 35 1 3.7359 1.6809 2.9044 36 1 3.0766 0.2001 2.1685 37 1 0.8190 1.1297 2.4362 38 1 1.4040 2.6901 3.0616 39 1 0.2252 3.1306 0.5333 40 1 -1.8810 4.7385 1.0248 41 1 -2.4658 3.1785 0.3982 42 1 -3.7197 5.9728 2.1113 43 1 -6.8445 2.2277 4.2978 44 1 -5.7389 0.9910 3.6523 45 1 -6.9601 1.0174 6.4207 46 1 -5.8551 -0.2198 5.7753 47 1 -5.4354 0.6573 7.2660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156299774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:05 Heat of formation + Delta-G solvation = -34.047150 kcal Electronic energy + Delta-G solvation = -28116.460116 eV Core-core repulsion = 24233.515327 eV Total energy + Delta-G solvation = -3882.944788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31787 -40.16184 -38.81291 -38.44620 -35.13518 -33.77758 -33.60834 -32.62564 -30.35213 -29.87089 -28.87893 -26.98257 -26.66481 -25.76487 -23.84204 -23.27476 -21.41340 -21.00012 -20.66723 -19.02586 -18.62352 -17.77429 -17.55890 -17.12838 -16.90129 -16.65828 -16.43255 -16.34289 -15.81315 -15.35806 -15.27858 -14.98235 -14.46832 -14.33501 -14.20027 -13.96942 -13.91725 -13.55442 -13.47532 -13.26215 -13.13393 -12.97233 -12.80334 -12.70984 -12.54204 -12.44080 -12.34777 -12.30171 -11.98656 -11.82883 -11.35282 -11.15583 -10.82364 -10.78247 -10.56540 -10.41893 -10.33907 -9.83977 -9.72727 -8.49653 -7.79107 -5.30939 -0.34600 0.41079 0.71248 1.51389 1.57006 1.64439 1.65482 1.82134 2.54046 2.58959 2.78964 3.28389 3.34976 3.66836 3.77060 4.03956 4.10364 4.24232 4.28451 4.31572 4.40138 4.47382 4.49251 4.51711 4.55623 4.60013 4.69658 4.73738 4.81186 4.84387 4.89650 4.93059 4.99041 5.06688 5.11382 5.22435 5.33358 5.55367 5.63550 5.73110 5.79617 5.86237 6.08590 6.53370 6.79990 6.85171 7.26334 7.45438 7.94425 8.48515 9.24726 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.002849 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.009403 B = 9824.158124 C =10833.866167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.063 0.937 6 C -0.034 4.034 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.291 1.291 11 H -0.303 1.303 12 C 0.182 3.818 13 H 0.074 0.926 14 C -0.136 4.136 15 C 0.119 3.881 16 N -0.701 5.701 17 C 0.508 3.492 18 O -0.580 6.580 19 C -0.064 4.064 20 C 0.061 3.939 21 C -0.248 4.248 22 S 0.184 5.816 23 C 0.013 3.987 24 C 0.140 3.860 25 O -0.415 6.415 26 C 0.026 3.974 27 N -0.467 5.467 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.248 0.752 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.411 0.589 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.210 0.790 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 2.578 7.539 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.231 4.231 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.189 1.189 10 H -0.218 1.218 11 H -0.230 1.230 12 C 0.075 3.925 13 H 0.092 0.908 14 C -0.195 4.195 15 C -0.007 4.007 16 N -0.352 5.352 17 C 0.295 3.705 18 O -0.461 6.461 19 C -0.106 4.106 20 C -0.071 4.071 21 C -0.387 4.387 22 S 0.438 5.562 23 C -0.265 4.265 24 C 0.061 3.939 25 O -0.335 6.335 26 C -0.069 4.069 27 N -0.183 5.183 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.248 0.752 40 H 0.158 0.842 41 H 0.138 0.862 42 H 0.227 0.773 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.838 2.535 8.840 23.695 hybrid contribution 1.376 0.278 -1.642 2.160 sum -20.461 2.813 7.199 21.872 Atomic orbital electron populations 1.22214 0.98119 1.00057 1.00777 1.20831 0.92949 0.86410 0.98467 1.43988 1.76014 1.09062 1.02100 1.19282 1.07121 1.18386 0.94104 0.91983 1.25771 0.94408 1.03116 0.99793 1.70153 1.07824 1.36855 1.41261 0.85414 0.77355 0.79360 0.79460 1.18923 1.21751 1.23038 1.20350 0.89839 0.97966 0.84369 0.90782 1.21878 0.99662 0.98874 0.99091 1.21808 0.88862 0.95305 0.94725 1.45879 1.12213 1.58265 1.18834 1.20847 0.83554 0.79501 0.86643 1.90684 1.81993 1.52935 1.20443 1.20304 0.88383 1.04440 0.97437 1.19781 0.98839 0.87652 1.00857 1.27302 1.01456 1.03977 1.05957 1.83438 1.27073 1.02400 1.43250 1.26936 0.98158 0.99288 1.02122 1.20931 0.94857 0.94921 0.83235 1.87951 1.59134 1.60065 1.26307 1.22988 0.98020 0.90245 0.95678 1.65928 1.07447 1.35373 1.09591 0.93802 0.92931 0.93950 0.94074 0.94999 0.94265 0.93442 0.93200 0.93940 0.93893 0.93585 0.75232 0.84234 0.86167 0.77288 0.87736 0.90493 0.91410 0.93196 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 9.95 71.98 0.72 -4.77 16 2 C 0.14 5.64 5.75 86.38 0.50 6.13 16 3 N -0.59 -26.53 1.88 -678.04 -1.28 -27.81 16 4 C -0.26 -12.65 9.07 84.03 0.76 -11.89 16 5 H 0.06 3.02 7.89 -2.91 -0.02 3.00 16 6 C -0.03 -1.69 4.86 84.86 0.41 -1.28 16 7 N -0.92 -49.28 10.90 21.65 0.24 -49.04 16 8 Si 0.95 41.13 29.59 68.60 2.03 43.16 16 9 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 12 C 0.18 7.93 1.95 44.99 0.09 8.02 16 13 H 0.07 3.69 5.94 -2.39 -0.01 3.67 16 14 C -0.14 -5.66 9.05 71.98 0.65 -5.00 16 15 C 0.12 4.76 4.36 86.38 0.38 5.14 16 16 N -0.70 -25.69 4.28 -463.05 -1.98 -27.68 16 17 C 0.51 18.35 7.75 87.66 0.68 19.03 16 18 O -0.58 -25.86 15.44 -3.04 -0.05 -25.91 16 19 C -0.06 -1.70 6.19 29.10 0.18 -1.52 16 20 C 0.06 1.74 5.64 41.52 0.23 1.97 16 21 C -0.25 -5.30 11.07 66.78 0.74 -4.56 16 22 S 0.18 3.58 23.18 -56.49 -1.31 2.27 16 23 C 0.01 0.33 7.02 88.52 0.62 0.96 16 24 C 0.14 2.94 6.51 71.24 0.46 3.40 16 25 O -0.42 -10.32 10.69 -148.98 -1.59 -11.91 16 26 C 0.03 0.40 11.01 113.37 1.25 1.65 16 27 N -0.47 -15.19 9.68 -179.41 -1.74 -16.93 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.61 5.32 -2.38 -0.01 1.60 16 31 H 0.04 1.62 6.29 -2.38 -0.01 1.60 16 32 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 33 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 34 H 0.05 2.23 7.69 -2.38 -0.02 2.21 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.64 6.56 -2.39 -0.02 1.62 16 37 H 0.04 1.79 6.98 -2.38 -0.02 1.77 16 38 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.41 14.95 7.74 -92.71 -0.72 14.24 16 40 H 0.14 2.73 8.03 -2.39 -0.02 2.71 16 41 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 42 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -69.29 395.44 2.25 -67.04 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.26 Total: 29.54 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 7.67 Total: 17.27 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.76 Total: -121.45 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.64 Total: -37.83 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.31 Total: 2.27 kcal Total: -69.29 2.25 -67.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156299774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.993 kcal (2) G-P(sol) polarization free energy of solvation -69.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds