Wall clock time and date at job start Wed Apr 1 2020 01:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47332 * 2 1 4 4 C 1.36943 * 120.00144 * 91.80157 * 3 2 1 5 5 H 1.07996 * 120.00079 * 218.61636 * 4 3 2 6 6 C 1.38813 * 119.99330 * 38.88634 * 4 3 2 7 7 N 1.31623 * 119.99650 * 206.99800 * 6 4 3 8 8 Si 1.86798 * 120.00268 * 27.00349 * 6 4 3 9 9 H 1.48498 * 109.47029 * 92.26937 * 8 6 4 10 10 H 1.48500 * 109.46987 * 212.26896 * 8 6 4 11 11 H 1.48497 * 109.47043 * 332.27037 * 8 6 4 12 12 C 1.46500 * 120.00130 * 271.80740 * 3 2 1 13 13 H 1.08994 * 109.47333 * 175.38340 * 12 3 2 14 14 C 1.52998 * 109.47448 * 55.37738 * 12 3 2 15 15 C 1.53006 * 109.46718 * 295.37859 * 12 3 2 16 16 N 1.46496 * 109.47147 * 297.49420 * 15 12 3 17 17 C 1.34777 * 119.99877 * 181.89306 * 16 15 12 18 18 O 1.21682 * 120.00257 * 5.24618 * 17 16 15 19 19 C 1.46689 * 119.99805 * 185.25240 * 17 16 15 20 20 S 1.76210 * 126.13108 * 351.47269 * 19 17 16 21 21 C 1.70949 * 90.31294 * 179.97438 * 20 19 17 22 22 C 1.50699 * 124.80544 * 180.10936 * 21 20 19 23 23 O 1.42902 * 109.47315 * 270.30084 * 22 21 20 24 24 C 1.42901 * 114.00471 * 179.97438 * 23 22 21 25 25 N 1.29433 * 110.39383 * 0.34661 * 21 20 19 26 26 C 1.30941 * 117.35866 * 359.73089 * 25 21 20 27 27 C 1.50706 * 122.90081 * 180.02562 * 26 25 21 28 28 H 1.08997 * 109.46521 * 65.84846 * 1 2 3 29 29 H 1.09005 * 109.46915 * 185.84345 * 1 2 3 30 30 H 1.08989 * 109.46709 * 305.84405 * 1 2 3 31 31 H 1.09008 * 109.47211 * 239.99666 * 2 1 3 32 32 H 1.09007 * 109.47130 * 120.00161 * 2 1 3 33 33 H 0.96996 * 119.99781 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46857 * 60.00240 * 14 12 3 35 35 H 1.08996 * 109.47331 * 180.02562 * 14 12 3 36 36 H 1.09001 * 109.46976 * 300.00734 * 14 12 3 37 37 H 1.09002 * 109.46826 * 57.49603 * 15 12 3 38 38 H 1.08996 * 109.47015 * 177.49615 * 15 12 3 39 39 H 0.96997 * 120.00066 * 1.88931 * 16 15 12 40 40 H 1.09002 * 109.47138 * 30.29674 * 22 21 20 41 41 H 1.08995 * 109.47469 * 150.29772 * 22 21 20 42 42 H 1.09001 * 109.46929 * 59.99242 * 24 23 22 43 43 H 1.08990 * 109.47049 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.46683 * 299.99747 * 24 23 22 45 45 H 1.08999 * 109.46721 * 269.99253 * 27 26 25 46 46 H 1.08996 * 109.47262 * 29.99098 * 27 26 25 47 47 H 1.08995 * 109.46883 * 149.99615 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2819 2.0143 1.1854 5 1 2.0358 3.0589 1.3059 6 6 2.8703 1.3147 2.2300 7 7 2.6577 1.6880 3.4741 8 14 3.9637 -0.1564 1.8700 9 1 5.3761 0.2903 1.7664 10 1 3.8374 -1.1476 2.9686 11 1 3.5469 -0.7813 0.5891 12 6 2.2249 2.0851 -1.2681 13 1 2.5091 3.1182 -1.0681 14 6 0.9295 2.0609 -2.0817 15 6 3.3373 1.3943 -2.0596 16 7 4.5917 1.4701 -1.3067 17 6 5.7235 0.9583 -1.8298 18 8 5.7252 0.5196 -2.9648 19 6 6.9534 0.9301 -1.0308 20 16 7.1932 1.7024 0.5348 21 6 8.7990 1.1183 0.5874 22 6 9.7682 1.3670 1.7142 23 8 10.4973 2.5693 1.4588 24 6 11.4485 2.8988 2.4730 25 7 9.0660 0.4363 -0.4797 26 6 8.1123 0.3108 -1.3681 27 6 8.2868 -0.4560 -2.6537 28 1 -0.3632 0.4205 -0.9377 29 1 -0.3633 -1.0224 0.1046 30 1 -0.3632 0.6017 0.8330 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.0692 1.1993 4.2041 34 1 0.1370 2.5530 -1.5179 35 1 1.0832 2.5842 -3.0254 36 1 0.6453 1.0277 -2.2817 37 1 3.0730 0.3492 -2.2211 38 1 3.4606 1.8908 -3.0220 39 1 4.6078 1.8886 -0.4318 40 1 9.2191 1.4671 2.6505 41 1 10.4624 0.5299 1.7879 42 1 12.1775 2.0935 2.5629 43 1 11.9599 3.8232 2.2048 44 1 10.9338 3.0309 3.4247 45 1 8.6512 0.2158 -3.4308 46 1 9.0064 -1.2605 -2.5021 47 1 7.3289 -0.8779 -2.9579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156635960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:58 Heat of formation + Delta-G solvation = -8.571087 kcal Electronic energy + Delta-G solvation = -28654.565722 eV Core-core repulsion = 24772.725659 eV Total energy + Delta-G solvation = -3881.840063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.26391 -39.06418 -37.98244 -37.20943 -34.11099 -32.45677 -32.22815 -31.02029 -28.99539 -28.90491 -28.45868 -26.28808 -25.58512 -23.71154 -22.82754 -22.38362 -21.39181 -19.84910 -18.92350 -18.02710 -16.97722 -16.84907 -16.76959 -16.02019 -15.71083 -15.60834 -15.31015 -15.10262 -14.60812 -14.05777 -14.00251 -13.70790 -13.23571 -12.96728 -12.87035 -12.73138 -12.59954 -12.49102 -12.36610 -12.27348 -12.08463 -11.96809 -11.69581 -11.62410 -11.53320 -11.24070 -10.90943 -10.82801 -10.27794 -10.13185 -10.05890 -9.90159 -9.86375 -9.57306 -9.39147 -9.28553 -8.86044 -8.57140 -8.41950 -6.93121 -6.15406 -3.53419 0.24438 1.22456 1.65876 2.42047 3.20776 3.30244 3.37430 3.43289 3.44944 3.59052 4.13065 4.42608 4.67804 4.82868 4.98076 5.02232 5.05716 5.11085 5.13559 5.15953 5.23974 5.40060 5.42611 5.72850 5.75180 5.82302 5.89290 5.91289 5.94843 6.01088 6.12258 6.21484 6.32000 6.36033 6.37282 6.55379 6.64535 6.67548 6.73955 6.84961 6.88090 7.12532 7.62152 7.83621 7.93702 8.28482 8.41655 8.88858 9.59923 10.04086 10.99744 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.004290 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.521503 B = 6524.897424 C = 7863.777815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.141 3.859 3 N -0.597 5.597 4 C -0.280 4.280 5 H 0.077 0.923 6 C 0.049 3.951 7 N -0.886 5.886 8 Si 0.829 3.171 9 H -0.267 1.267 10 H -0.297 1.297 11 H -0.254 1.254 12 C 0.155 3.845 13 H 0.077 0.923 14 C -0.157 4.157 15 C 0.103 3.897 16 N -0.703 5.703 17 C 0.592 3.408 18 O -0.536 6.536 19 C -0.296 4.296 20 S 0.234 5.766 21 C 0.030 3.970 22 C 0.140 3.860 23 O -0.382 6.382 24 C 0.032 3.968 25 N -0.462 5.462 26 C 0.136 3.864 27 C -0.081 4.081 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.409 0.591 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 -0.133 -4.903 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.016 3.984 3 N -0.320 5.320 4 C -0.408 4.408 5 H 0.094 0.906 6 C -0.153 4.153 7 N -0.525 5.525 8 Si 0.657 3.343 9 H -0.194 1.194 10 H -0.224 1.224 11 H -0.179 1.179 12 C 0.047 3.953 13 H 0.096 0.904 14 C -0.216 4.216 15 C -0.023 4.023 16 N -0.354 5.354 17 C 0.376 3.624 18 O -0.416 6.416 19 C -0.420 4.420 20 S 0.493 5.507 21 C -0.244 4.244 22 C 0.060 3.940 23 O -0.301 6.301 24 C -0.065 4.065 25 N -0.179 5.179 26 C -0.004 4.004 27 C -0.140 4.140 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.246 0.754 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.570 0.087 -4.926 11.661 hybrid contribution 0.826 -1.356 0.156 1.596 sum 11.396 -1.269 -4.770 12.419 Atomic orbital electron populations 1.22483 0.99269 0.99529 1.01812 1.21182 0.91975 0.86444 0.98816 1.44180 1.75036 1.11439 1.01303 1.18728 1.36361 0.97275 0.88417 0.90594 1.25475 0.97689 0.97189 0.94973 1.69956 1.42560 1.41705 0.98328 0.87878 0.83332 0.84305 0.78790 1.19415 1.22398 1.17885 1.20806 0.91433 0.96431 0.86588 0.90445 1.22250 0.98724 1.01603 0.99023 1.22121 0.83659 1.01735 0.94755 1.45886 1.08005 1.58922 1.22620 1.16666 0.81677 0.78462 0.85558 1.90739 1.84995 1.48351 1.17498 1.25734 1.01455 1.13362 1.01490 1.84519 1.07235 1.45836 1.13132 1.26805 0.98186 1.00975 0.98443 1.20800 0.92200 0.89006 0.91981 1.87959 1.54084 1.41367 1.46659 1.22808 0.91497 1.01098 0.91093 1.65991 1.32856 1.17868 1.01206 1.20568 0.86244 0.96764 0.96788 1.20549 1.04270 0.98715 0.90438 0.93230 0.94685 0.92166 0.94742 0.93004 0.92687 0.91967 0.93391 0.92590 0.91971 0.91819 0.75444 0.90533 0.89928 0.93670 0.89120 0.93528 0.90182 0.91047 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.84 37.16 0.37 -2.76 16 2 C 0.14 2.89 3.87 -4.04 -0.02 2.88 16 3 N -0.60 -12.57 1.74 -165.65 -0.29 -12.86 16 4 C -0.28 -6.96 9.48 -15.06 -0.14 -7.11 16 5 H 0.08 2.07 8.06 -52.49 -0.42 1.65 16 6 C 0.05 1.27 5.18 -17.43 -0.09 1.18 16 7 N -0.89 -24.97 13.97 55.49 0.78 -24.20 16 8 Si 0.83 19.37 25.47 -169.99 -4.33 15.04 16 9 H -0.27 -5.77 5.30 56.52 0.30 -5.47 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.25 -5.88 5.26 56.52 0.30 -5.58 16 12 C 0.16 2.74 2.78 -67.93 -0.19 2.55 16 13 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 14 C -0.16 -2.34 7.98 37.16 0.30 -2.04 16 15 C 0.10 1.78 5.09 -4.04 -0.02 1.76 16 16 N -0.70 -13.12 5.34 -61.62 -0.33 -13.45 16 17 C 0.59 11.20 7.74 -12.85 -0.10 11.10 16 18 O -0.54 -10.67 14.41 5.21 0.08 -10.59 16 19 C -0.30 -5.31 6.47 -37.09 -0.24 -5.55 16 20 S 0.23 3.92 20.64 -107.50 -2.22 1.70 16 21 C 0.03 0.47 7.01 -13.29 -0.09 0.37 16 22 C 0.14 1.69 6.51 36.01 0.23 1.93 16 23 O -0.38 -4.78 10.69 -35.23 -0.38 -5.15 16 24 C 0.03 0.26 11.01 101.05 1.11 1.37 16 25 N -0.46 -7.71 10.50 -7.70 -0.08 -7.79 16 26 C 0.14 2.31 6.79 -83.89 -0.57 1.74 16 27 C -0.08 -1.17 9.60 36.01 0.35 -0.82 16 28 H 0.05 0.81 5.43 -51.93 -0.28 0.53 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.67 6.63 -51.92 -0.34 0.33 16 32 H 0.05 1.18 4.04 -51.92 -0.21 0.97 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 34 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.82 6.13 -51.93 -0.32 0.50 16 37 H 0.06 1.13 6.76 -51.93 -0.35 0.78 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.41 7.95 6.56 -40.82 -0.27 7.68 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.09 1.48 6.22 -51.93 -0.32 1.16 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -29.99 383.47 -7.44 -37.44 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.34 Total: 7.49 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 0.89 Total: 6.60 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.08 Total: -58.30 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.30 Total: -15.74 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.33 Total: 15.04 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.22 Total: 1.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.99 -7.44 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156635960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.864 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds