Wall clock time and date at job start Wed Apr 1 2020 01:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46506 * 109.47157 * 2 1 4 4 C 1.36937 * 119.99731 * 274.03651 * 3 2 1 5 5 H 1.07996 * 120.00267 * 174.70448 * 4 3 2 6 6 C 1.38813 * 119.99910 * 354.71261 * 4 3 2 7 7 N 1.31617 * 120.00454 * 31.37858 * 6 4 3 8 8 Si 1.86810 * 119.99597 * 211.38186 * 6 4 3 9 9 H 1.48499 * 109.46945 * 84.99623 * 8 6 4 10 10 H 1.48497 * 109.46693 * 204.99228 * 8 6 4 11 11 H 1.48494 * 109.46887 * 324.99201 * 8 6 4 12 12 C 1.46495 * 120.00049 * 94.03888 * 3 2 1 13 13 H 1.09000 * 109.46785 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47260 * 59.99913 * 12 3 2 15 15 C 1.53003 * 109.47173 * 299.99810 * 12 3 2 16 16 N 1.46501 * 109.47082 * 305.00553 * 15 12 3 17 17 C 1.34774 * 119.99628 * 180.02562 * 16 15 12 18 18 O 1.21287 * 120.00200 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99893 * 180.27370 * 17 16 15 20 20 N 1.46503 * 109.47332 * 179.71975 * 19 17 16 21 21 C 1.36317 * 121.37592 * 89.99974 * 20 19 17 22 22 C 1.50697 * 121.64853 * 359.97438 * 21 20 19 23 23 C 1.32563 * 116.70505 * 180.02562 * 21 20 19 24 24 C 1.50702 * 127.34117 * 179.97438 * 23 21 20 25 25 S 1.77232 * 105.31961 * 0.02562 * 23 21 20 26 26 C 1.34235 * 121.38100 * 269.71542 * 20 19 17 27 27 O 1.21826 * 127.05708 * 0.02562 * 26 20 19 28 28 H 1.09004 * 109.47481 * 300.00441 * 1 2 3 29 29 H 1.08999 * 109.47386 * 60.00469 * 1 2 3 30 30 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47481 * 239.99559 * 2 1 3 32 32 H 1.08999 * 109.47386 * 119.99531 * 2 1 3 33 33 H 0.96999 * 120.00084 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46865 * 60.00130 * 14 12 3 35 35 H 1.09004 * 109.47090 * 179.97438 * 14 12 3 36 36 H 1.08994 * 109.47491 * 300.00374 * 14 12 3 37 37 H 1.08994 * 109.46957 * 184.99827 * 15 12 3 38 38 H 1.08997 * 109.46640 * 65.00283 * 15 12 3 39 39 H 0.97000 * 119.99954 * 359.97438 * 16 15 12 40 40 H 1.09000 * 109.47452 * 299.72301 * 19 17 16 41 41 H 1.09004 * 109.47168 * 59.72102 * 19 17 16 42 42 H 1.08997 * 109.47310 * 89.99575 * 22 21 20 43 43 H 1.09002 * 109.46727 * 210.00114 * 22 21 20 44 44 H 1.09006 * 109.46898 * 329.99923 * 22 21 20 45 45 H 1.09002 * 109.46580 * 90.00457 * 24 23 21 46 46 H 1.08994 * 109.47458 * 209.99834 * 24 23 21 47 47 H 1.08999 * 109.46727 * 330.00795 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4453 3.0983 -1.1790 6 6 1.9624 1.3956 -2.3874 7 7 1.0859 0.4165 -2.4608 8 14 2.9303 1.8985 -3.9040 9 1 4.2410 1.2003 -3.9087 10 1 2.1677 1.5281 -5.1231 11 1 3.1516 3.3668 -3.8855 12 6 2.3467 2.0421 1.2655 13 1 2.6911 3.0570 1.0667 14 6 3.4516 1.2594 1.9779 15 6 1.1019 2.0902 2.1538 16 7 0.0066 2.7349 1.4251 17 6 -1.1958 2.8892 2.0142 18 8 -1.3711 2.4939 3.1474 19 6 -2.3242 3.5467 1.2625 20 7 -3.5176 3.5885 2.1113 21 6 -3.7660 4.6459 2.9350 22 6 -2.8285 5.8230 3.0152 23 6 -4.8725 4.5871 3.6627 24 6 -5.3766 5.6134 4.6443 25 16 -5.6320 3.0436 3.2362 26 6 -4.4144 2.5897 2.1061 27 8 -4.3732 1.5696 1.4414 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.9428 -0.0442 -3.3024 34 1 4.3384 1.2252 1.3450 35 1 3.6963 1.7514 2.9193 36 1 3.1077 0.2444 2.1766 37 1 1.3219 2.6591 3.0571 38 1 0.8100 1.0758 2.4255 39 1 0.1470 3.0513 0.5190 40 1 -2.0364 4.5622 0.9901 41 1 -2.5406 2.9759 0.3594 42 1 -3.1223 6.5723 2.2802 43 1 -2.8744 6.2565 4.0143 44 1 -1.8107 5.4916 2.8093 45 1 -6.0187 6.3263 4.1270 46 1 -5.9451 5.1161 5.4301 47 1 -4.5305 6.1402 5.0857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157105007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:11 Heat of formation + Delta-G solvation = -6.702639 kcal Electronic energy + Delta-G solvation = -29007.410468 eV Core-core repulsion = 25125.651427 eV Total energy + Delta-G solvation = -3881.759041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.19892 -39.06917 -37.64936 -37.01495 -33.98478 -33.64994 -32.27559 -30.38724 -30.13812 -29.46591 -28.43276 -26.08677 -24.86275 -23.81525 -23.32098 -21.80285 -20.37004 -19.72564 -19.12758 -18.29696 -17.34330 -16.99359 -16.94898 -15.67188 -15.62544 -15.36238 -15.11574 -14.71991 -14.12736 -14.06567 -13.96130 -13.68945 -13.65839 -13.17191 -12.96735 -12.75756 -12.72784 -12.65240 -12.48122 -12.31226 -11.96432 -11.81476 -11.50650 -11.43095 -11.17462 -11.00087 -10.81917 -10.75426 -10.64351 -10.33932 -10.05002 -9.94339 -9.87739 -9.66742 -9.31375 -9.24987 -8.58979 -8.27886 -7.88120 -7.07134 -5.90070 -3.11409 0.94226 1.34529 1.71115 2.15600 2.67901 2.83210 3.34202 3.43469 3.46032 3.59904 4.35569 4.41582 4.70742 4.82319 4.94155 5.03018 5.12346 5.14694 5.15794 5.20725 5.34368 5.35178 5.49155 5.49903 5.62964 5.68055 5.84200 6.00255 6.06560 6.10368 6.24832 6.27812 6.60504 6.65874 6.68935 6.79296 6.91715 6.99206 7.14079 7.21283 7.34755 7.61729 7.79055 7.91566 8.10381 8.25271 8.51591 9.15106 9.79145 10.24699 11.13035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.003127 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.291169 B = 8951.149955 C = 9328.087243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.166 3.834 3 N -0.594 5.594 4 C -0.267 4.267 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.877 5.877 8 Si 0.880 3.120 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.163 3.837 13 H 0.068 0.932 14 C -0.158 4.158 15 C 0.106 3.894 16 N -0.694 5.694 17 C 0.495 3.505 18 O -0.545 6.545 19 C 0.080 3.920 20 N -0.512 5.512 21 C 0.110 3.890 22 C -0.100 4.100 23 C -0.215 4.215 24 C -0.058 4.058 25 S -0.006 6.006 26 C 0.490 3.510 27 O -0.465 6.465 28 H 0.018 0.982 29 H 0.087 0.913 30 H 0.014 0.986 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.253 0.747 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 12.668 11.683 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 N -0.317 5.317 4 C -0.395 4.395 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.521 5.521 8 Si 0.709 3.291 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.054 3.946 13 H 0.086 0.914 14 C -0.218 4.218 15 C -0.020 4.020 16 N -0.345 5.345 17 C 0.279 3.721 18 O -0.423 6.423 19 C -0.049 4.049 20 N -0.232 5.232 21 C 0.000 4.000 22 C -0.159 4.159 23 C -0.335 4.335 24 C -0.117 4.117 25 S 0.237 5.763 26 C 0.171 3.829 27 O -0.343 6.343 28 H 0.037 0.963 29 H 0.105 0.895 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.531 10.955 12.260 19.004 hybrid contribution 1.794 0.664 -1.852 2.662 sum -7.737 11.619 10.409 17.413 Atomic orbital electron populations 1.22391 0.98961 0.98212 1.01202 1.20890 0.92528 0.84447 0.98039 1.44246 1.75705 1.11269 1.00441 1.19172 1.42223 0.94840 0.83273 0.90641 1.24708 0.98570 0.98203 0.97226 1.70285 1.30108 1.26456 1.25273 0.86646 0.81301 0.77928 0.83198 1.21685 1.22172 1.20831 1.20534 0.91067 0.96438 0.86610 0.91362 1.22189 0.99710 1.00665 0.99247 1.22051 0.88035 0.97315 0.94570 1.45798 1.10339 1.59250 1.19117 1.20520 0.83963 0.80411 0.87224 1.90703 1.82503 1.50425 1.18667 1.21734 0.84035 1.04554 0.94605 1.45533 1.21589 1.17607 1.38495 1.19179 0.97019 0.90589 0.93232 1.20764 0.97455 0.93348 1.04341 1.23365 1.00067 1.00896 1.09136 1.20070 1.01234 0.94856 0.95530 1.84945 1.28961 1.18177 1.44177 1.21443 0.86928 0.85931 0.88568 1.91002 1.74058 1.23916 1.45307 0.96258 0.89477 0.96686 0.89836 0.97585 0.93626 0.92201 0.93665 0.92956 0.92789 0.91975 0.75005 0.86275 0.85556 0.89597 0.89139 0.90667 0.90836 0.90990 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.27 37.15 0.34 -3.11 16 2 C 0.17 3.81 5.01 -4.04 -0.02 3.79 16 3 N -0.59 -12.93 1.92 -165.66 -0.32 -13.25 16 4 C -0.27 -6.39 9.38 -15.06 -0.14 -6.53 16 5 H 0.08 1.75 7.83 -52.49 -0.41 1.34 16 6 C 0.01 0.29 4.97 -17.43 -0.09 0.21 16 7 N -0.88 -23.07 8.40 55.49 0.47 -22.60 16 8 Si 0.88 20.16 29.65 -169.99 -5.04 15.12 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.16 2.90 2.87 -67.93 -0.19 2.71 16 13 H 0.07 1.18 7.78 -51.93 -0.40 0.77 16 14 C -0.16 -2.55 9.18 37.16 0.34 -2.21 16 15 C 0.11 1.84 4.32 -4.04 -0.02 1.82 16 16 N -0.69 -11.67 3.99 -60.30 -0.24 -11.91 16 17 C 0.50 8.41 7.38 -10.99 -0.08 8.32 16 18 O -0.54 -11.07 16.43 5.55 0.09 -10.98 16 19 C 0.08 1.10 5.47 -5.19 -0.03 1.08 16 20 N -0.51 -7.41 2.09 -118.57 -0.25 -7.66 16 21 C 0.11 1.27 6.59 -82.51 -0.54 0.72 16 22 C -0.10 -0.78 9.07 36.00 0.33 -0.45 16 23 C -0.21 -2.30 6.72 -36.22 -0.24 -2.54 16 24 C -0.06 -0.39 10.10 36.01 0.36 -0.02 16 25 S -0.01 -0.08 22.97 -107.50 -2.47 -2.55 16 26 C 0.49 8.33 8.27 53.81 0.45 8.77 16 27 O -0.46 -9.58 17.55 5.08 0.09 -9.49 16 28 H 0.02 0.43 4.84 -51.93 -0.25 0.17 16 29 H 0.09 2.24 6.30 -51.93 -0.33 1.91 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 2.18 5.84 -51.93 -0.30 1.87 16 32 H 0.01 0.13 6.43 -51.93 -0.33 -0.21 16 33 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.22 6.92 -51.93 -0.36 0.86 16 39 H 0.41 7.04 7.89 -40.82 -0.32 6.72 16 40 H 0.12 1.16 6.83 -51.93 -0.35 0.81 16 41 H 0.13 1.87 7.80 -51.93 -0.40 1.46 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.55 6.69 -51.93 -0.35 0.20 16 44 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.40 6.77 -51.93 -0.35 0.05 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -31.28 383.49 -8.38 -39.67 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.96 Total: 5.32 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 0.46 Total: 12.56 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.34 Total: -55.42 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.18 Total: -20.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.04 Total: 15.12 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.47 Total: -2.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.28 -8.38 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157105007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.963 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds