Wall clock time and date at job start Wed Apr 1 2020 01:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46506 * 109.47157 * 2 1 4 4 C 1.36937 * 119.99731 * 274.03651 * 3 2 1 5 5 H 1.07996 * 120.00267 * 174.70448 * 4 3 2 6 6 C 1.38813 * 119.99910 * 354.71261 * 4 3 2 7 7 N 1.31617 * 120.00454 * 31.37858 * 6 4 3 8 8 Si 1.86810 * 119.99597 * 211.38186 * 6 4 3 9 9 H 1.48499 * 109.46945 * 84.99623 * 8 6 4 10 10 H 1.48497 * 109.46693 * 204.99228 * 8 6 4 11 11 H 1.48494 * 109.46887 * 324.99201 * 8 6 4 12 12 C 1.46495 * 120.00049 * 94.03888 * 3 2 1 13 13 H 1.09000 * 109.46785 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47260 * 59.99913 * 12 3 2 15 15 C 1.53003 * 109.47173 * 299.99810 * 12 3 2 16 16 N 1.46501 * 109.47082 * 305.00553 * 15 12 3 17 17 C 1.34774 * 119.99628 * 180.02562 * 16 15 12 18 18 O 1.21287 * 120.00200 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99893 * 180.27370 * 17 16 15 20 20 N 1.46503 * 109.47332 * 179.71975 * 19 17 16 21 21 C 1.36317 * 121.37592 * 89.99974 * 20 19 17 22 22 C 1.50697 * 121.64853 * 359.97438 * 21 20 19 23 23 C 1.32563 * 116.70505 * 180.02562 * 21 20 19 24 24 C 1.50702 * 127.34117 * 179.97438 * 23 21 20 25 25 S 1.77232 * 105.31961 * 0.02562 * 23 21 20 26 26 C 1.34235 * 121.38100 * 269.71542 * 20 19 17 27 27 O 1.21826 * 127.05708 * 0.02562 * 26 20 19 28 28 H 1.09004 * 109.47481 * 300.00441 * 1 2 3 29 29 H 1.08999 * 109.47386 * 60.00469 * 1 2 3 30 30 H 1.09002 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47481 * 239.99559 * 2 1 3 32 32 H 1.08999 * 109.47386 * 119.99531 * 2 1 3 33 33 H 0.96999 * 120.00084 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46865 * 60.00130 * 14 12 3 35 35 H 1.09004 * 109.47090 * 179.97438 * 14 12 3 36 36 H 1.08994 * 109.47491 * 300.00374 * 14 12 3 37 37 H 1.08994 * 109.46957 * 184.99827 * 15 12 3 38 38 H 1.08997 * 109.46640 * 65.00283 * 15 12 3 39 39 H 0.97000 * 119.99954 * 359.97438 * 16 15 12 40 40 H 1.09000 * 109.47452 * 299.72301 * 19 17 16 41 41 H 1.09004 * 109.47168 * 59.72102 * 19 17 16 42 42 H 1.08997 * 109.47310 * 89.99575 * 22 21 20 43 43 H 1.09002 * 109.46727 * 210.00114 * 22 21 20 44 44 H 1.09006 * 109.46898 * 329.99923 * 22 21 20 45 45 H 1.09002 * 109.46580 * 90.00457 * 24 23 21 46 46 H 1.08994 * 109.47458 * 209.99834 * 24 23 21 47 47 H 1.08999 * 109.46727 * 330.00795 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1678 2.0546 -1.1830 5 1 2.4453 3.0983 -1.1790 6 6 1.9624 1.3956 -2.3874 7 7 1.0859 0.4165 -2.4608 8 14 2.9303 1.8985 -3.9040 9 1 4.2410 1.2003 -3.9087 10 1 2.1677 1.5281 -5.1231 11 1 3.1516 3.3668 -3.8855 12 6 2.3467 2.0421 1.2655 13 1 2.6911 3.0570 1.0667 14 6 3.4516 1.2594 1.9779 15 6 1.1019 2.0902 2.1538 16 7 0.0066 2.7349 1.4251 17 6 -1.1958 2.8892 2.0142 18 8 -1.3711 2.4939 3.1474 19 6 -2.3242 3.5467 1.2625 20 7 -3.5176 3.5885 2.1113 21 6 -3.7660 4.6459 2.9350 22 6 -2.8285 5.8230 3.0152 23 6 -4.8725 4.5871 3.6627 24 6 -5.3766 5.6134 4.6443 25 16 -5.6320 3.0436 3.2362 26 6 -4.4144 2.5897 2.1061 27 8 -4.3732 1.5696 1.4414 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.9428 -0.0442 -3.3024 34 1 4.3384 1.2252 1.3450 35 1 3.6963 1.7514 2.9193 36 1 3.1077 0.2444 2.1766 37 1 1.3219 2.6591 3.0571 38 1 0.8100 1.0758 2.4255 39 1 0.1470 3.0513 0.5190 40 1 -2.0364 4.5622 0.9901 41 1 -2.5406 2.9759 0.3594 42 1 -3.1223 6.5723 2.2802 43 1 -2.8744 6.2565 4.0143 44 1 -1.8107 5.4916 2.8093 45 1 -6.0187 6.3263 4.1270 46 1 -5.9451 5.1161 5.4301 47 1 -4.5305 6.1402 5.0857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157105007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:10 Heat of formation + Delta-G solvation = -25.429165 kcal Electronic energy + Delta-G solvation = -29008.222511 eV Core-core repulsion = 25125.651427 eV Total energy + Delta-G solvation = -3882.571084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.31983 -40.45864 -38.87892 -38.58948 -35.57354 -34.59701 -33.84334 -32.06805 -31.27691 -30.35706 -30.06436 -27.28069 -25.84062 -25.62634 -24.50932 -23.53419 -21.61489 -20.95037 -20.64898 -19.27272 -18.81732 -18.57890 -18.15270 -17.24365 -16.92775 -16.72680 -16.48147 -15.99724 -15.75970 -15.18223 -14.94201 -14.87390 -14.62407 -14.48587 -14.33749 -14.16154 -13.95125 -13.64677 -13.57564 -13.47669 -13.31572 -13.15272 -12.82520 -12.78741 -12.58287 -12.48194 -12.44057 -12.39742 -12.10577 -11.86683 -11.62490 -11.42633 -11.29516 -11.19490 -11.17161 -10.39768 -10.20854 -9.99843 -8.91371 -8.88980 -7.81073 -5.01080 -0.18930 0.34603 0.75766 1.04052 1.47167 1.50778 1.58560 1.61480 1.64399 2.32116 2.57028 3.28848 3.48580 3.61587 3.72280 3.74397 4.05321 4.06064 4.10887 4.26796 4.38801 4.58422 4.59556 4.65262 4.68331 4.74513 4.76647 4.81483 4.90601 4.96807 5.05779 5.07531 5.10141 5.22242 5.27604 5.33014 5.40085 5.42072 5.57008 5.67295 5.70890 5.85792 6.13007 6.17809 6.35540 6.53880 7.14711 7.24339 7.96808 8.39813 9.21446 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.003127 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.291169 B = 8951.149955 C = 9328.087243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.175 3.825 3 N -0.600 5.600 4 C -0.255 4.255 5 H 0.088 0.912 6 C -0.037 4.037 7 N -0.905 5.905 8 Si 0.934 3.066 9 H -0.300 1.300 10 H -0.310 1.310 11 H -0.270 1.270 12 C 0.162 3.838 13 H 0.083 0.917 14 C -0.151 4.151 15 C 0.115 3.885 16 N -0.691 5.691 17 C 0.497 3.503 18 O -0.580 6.580 19 C 0.083 3.917 20 N -0.512 5.512 21 C 0.087 3.913 22 C -0.096 4.096 23 C -0.200 4.200 24 C -0.059 4.059 25 S -0.003 6.003 26 C 0.462 3.538 27 O -0.525 6.525 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.007 0.993 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.243 0.757 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.413 0.587 40 H 0.165 0.835 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 16.227 13.523 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 N -0.323 5.323 4 C -0.384 4.384 5 H 0.106 0.894 6 C -0.233 4.233 7 N -0.551 5.551 8 Si 0.765 3.235 9 H -0.228 1.228 10 H -0.238 1.238 11 H -0.194 1.194 12 C 0.054 3.946 13 H 0.101 0.899 14 C -0.211 4.211 15 C -0.011 4.011 16 N -0.342 5.342 17 C 0.282 3.718 18 O -0.460 6.460 19 C -0.046 4.046 20 N -0.232 5.232 21 C -0.021 4.021 22 C -0.155 4.155 23 C -0.319 4.319 24 C -0.117 4.117 25 S 0.241 5.759 26 C 0.146 3.854 27 O -0.409 6.409 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.250 0.750 40 H 0.182 0.818 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.912 14.598 14.142 22.193 hybrid contribution 1.570 -0.358 -2.277 2.789 sum -7.342 14.240 11.865 19.937 Atomic orbital electron populations 1.22192 0.99375 0.97394 0.99916 1.20636 0.91944 0.85387 0.97071 1.44358 1.75606 1.10759 1.01559 1.19491 1.39861 0.95250 0.83767 0.89413 1.25218 0.99632 0.99069 0.99371 1.70423 1.31678 1.28057 1.24949 0.85770 0.79269 0.78021 0.80441 1.22831 1.23775 1.19438 1.20755 0.91706 0.97068 0.85060 0.89886 1.22091 0.98457 1.00089 1.00420 1.21918 0.87707 0.96301 0.95201 1.45798 1.10476 1.58928 1.18974 1.20967 0.84344 0.79694 0.86819 1.90679 1.83058 1.51946 1.20367 1.21789 0.82897 1.06496 0.93421 1.45640 1.21000 1.17782 1.38737 1.19873 0.98311 0.90892 0.93044 1.20934 0.95803 0.92140 1.06632 1.24064 0.99117 0.99643 1.09077 1.20308 1.02537 0.94094 0.94796 1.84871 1.27884 1.20485 1.42690 1.21989 0.88311 0.85990 0.89112 1.90949 1.76039 1.26100 1.47814 0.96061 0.91886 0.97356 0.92806 0.96377 0.94757 0.92743 0.90422 0.93995 0.90763 0.94602 0.74998 0.81757 0.87050 0.86901 0.86848 0.91551 0.88692 0.90508 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 9.27 71.98 0.67 -5.54 16 2 C 0.17 8.16 5.01 86.37 0.43 8.59 16 3 N -0.60 -25.65 1.92 -678.04 -1.30 -26.95 16 4 C -0.25 -11.92 9.38 84.03 0.79 -11.13 16 5 H 0.09 3.86 7.83 -2.91 -0.02 3.84 16 6 C -0.04 -1.87 4.97 84.86 0.42 -1.45 16 7 N -0.90 -48.89 8.40 21.65 0.18 -48.70 16 8 Si 0.93 41.75 29.65 68.60 2.03 43.78 16 9 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 10 H -0.31 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 C 0.16 5.43 2.87 44.99 0.13 5.56 16 13 H 0.08 2.59 7.78 -2.39 -0.02 2.57 16 14 C -0.15 -4.50 9.18 71.98 0.66 -3.84 16 15 C 0.11 3.80 4.32 86.38 0.37 4.17 16 16 N -0.69 -22.62 3.99 -463.07 -1.85 -24.47 16 17 C 0.50 16.63 7.38 87.66 0.65 17.28 16 18 O -0.58 -23.48 16.43 -3.05 -0.05 -23.53 16 19 C 0.08 2.25 5.47 85.63 0.47 2.72 16 20 N -0.51 -14.61 2.09 -647.51 -1.35 -15.96 16 21 C 0.09 1.80 6.59 40.71 0.27 2.07 16 22 C -0.10 -1.11 9.07 71.23 0.65 -0.47 16 23 C -0.20 -3.78 6.72 24.54 0.16 -3.62 16 24 C -0.06 -0.54 10.10 71.24 0.72 0.18 16 25 S 0.00 -0.08 22.97 -56.49 -1.30 -1.38 16 26 C 0.46 16.28 8.27 129.88 1.07 17.36 16 27 O -0.53 -23.19 17.55 -4.75 -0.08 -23.27 16 28 H 0.02 0.97 4.84 -2.39 -0.01 0.96 16 29 H 0.06 3.35 6.30 -2.39 -0.02 3.34 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 2.87 5.84 -2.39 -0.01 2.86 16 32 H 0.02 0.79 6.43 -2.39 -0.02 0.77 16 33 H 0.24 13.22 8.31 -92.71 -0.77 12.44 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.04 1.33 6.66 -2.39 -0.02 1.31 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.04 1.39 6.92 -2.39 -0.02 1.38 16 39 H 0.41 13.63 7.89 -92.71 -0.73 12.90 16 40 H 0.17 2.83 6.83 -2.39 -0.02 2.81 16 41 H 0.11 3.42 7.80 -2.38 -0.02 3.40 16 42 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 0.80 6.69 -2.39 -0.02 0.79 16 44 H 0.07 0.92 6.70 -2.38 -0.02 0.91 16 45 H 0.09 0.55 8.14 -2.39 -0.02 0.54 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 0.53 6.77 -2.39 -0.02 0.52 16 Total: -1.00 -71.47 383.49 4.02 -67.45 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.27 Total: 21.15 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 7.46 Total: 31.88 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.32 Total: -116.08 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.13 Total: -46.80 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.30 Total: -1.38 kcal Total: -71.47 4.02 -67.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157105007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.024 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds