Wall clock time and date at job start Wed Apr 1 2020 01:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46732 * 2 1 4 4 C 1.46495 * 120.00043 * 275.00163 * 3 2 1 5 5 C 1.53007 * 109.46972 * 274.99909 * 4 3 2 6 6 S 1.65602 * 119.99616 * 95.00346 * 3 2 1 7 7 O 1.42100 * 106.40442 * 336.45391 * 6 3 2 8 8 O 1.42107 * 106.39710 * 203.53820 * 6 3 2 9 9 C 1.76196 * 107.21973 * 90.00082 * 6 3 2 10 10 C 1.38874 * 120.33833 * 89.99629 * 9 6 3 11 11 C 1.38305 * 118.50806 * 180.02562 * 10 9 6 12 12 C 1.39143 * 119.09428 * 0.02562 * 11 10 9 13 13 N 1.38992 * 119.70430 * 179.97438 * 12 11 10 14 14 C 1.46503 * 120.00445 * 359.97438 * 13 12 11 15 15 C 1.52994 * 109.47623 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47151 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47102 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99625 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00160 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46881 * 90.00344 * 21 19 17 23 23 H 1.48496 * 109.47381 * 209.99970 * 21 19 17 24 24 H 1.48493 * 109.47239 * 330.00498 * 21 19 17 25 25 N 1.32396 * 120.58609 * 0.02562 * 12 11 10 26 26 C 1.31970 * 121.62524 * 359.97438 * 25 12 11 27 27 H 1.08998 * 109.47477 * 299.99642 * 1 2 3 28 28 H 1.09001 * 109.47524 * 59.99885 * 1 2 3 29 29 H 1.08998 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46994 * 240.00520 * 2 1 3 31 31 H 1.08995 * 109.47099 * 120.00059 * 2 1 3 32 32 H 1.08997 * 109.47147 * 35.00088 * 4 3 2 33 33 H 1.08999 * 109.47342 * 155.00657 * 4 3 2 34 34 H 1.09000 * 109.46838 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47331 * 300.00067 * 5 4 3 36 36 H 1.09001 * 109.46886 * 59.99897 * 5 4 3 37 37 H 1.08001 * 120.74845 * 0.02562 * 10 9 6 38 38 H 1.07994 * 120.45256 * 179.72768 * 11 10 9 39 39 H 0.97002 * 119.99871 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.47011 * 300.00902 * 14 13 12 41 41 H 1.09010 * 109.46557 * 60.00012 * 14 13 12 42 42 H 1.09005 * 109.46709 * 300.00119 * 15 14 13 43 43 H 1.09000 * 109.47098 * 59.99825 * 15 14 13 44 44 H 1.08997 * 109.47203 * 299.99744 * 16 15 14 45 45 H 1.08995 * 109.47240 * 59.99945 * 16 15 14 46 46 H 0.96999 * 120.00055 * 179.97438 * 20 19 17 47 47 H 1.08004 * 119.56936 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2638 5 6 3.5151 1.7841 -1.8917 6 16 2.4121 2.1202 1.4287 7 8 1.6868 1.4415 2.4448 8 8 2.3055 3.5186 1.1999 9 6 4.1169 1.7942 1.7320 10 6 5.0923 2.6605 1.2557 11 6 6.4188 2.3677 1.5151 12 6 6.7295 1.2213 2.2400 13 7 8.0585 0.9146 2.5075 14 6 9.1250 1.7964 2.0264 15 6 10.4826 1.2342 2.4525 16 6 11.5963 2.1555 1.9506 17 6 12.9337 1.6014 2.3697 18 1 12.9841 0.6841 2.9377 19 6 14.0927 2.2654 2.0282 20 7 14.0312 3.3826 1.3370 21 14 15.7503 1.5790 2.5483 22 1 16.2592 0.6634 1.4957 23 1 16.7105 2.6955 2.7395 24 1 15.5990 0.8324 3.8230 25 7 5.7704 0.4196 2.6762 26 6 4.4966 0.6740 2.4435 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3616 1.8098 -1.9452 33 1 2.0921 3.1803 -1.0755 34 1 3.6193 2.3257 -2.8319 35 1 4.3116 2.0830 -1.2104 36 1 3.5812 0.7125 -2.0800 37 1 4.8210 3.5430 0.6953 38 1 7.2031 3.0174 1.1559 39 1 8.2799 0.1164 3.0121 40 1 9.0826 1.8580 0.9390 41 1 8.9935 2.7913 2.4521 42 1 10.5252 1.1724 3.5400 43 1 10.6139 0.2395 2.0266 44 1 11.5539 2.2177 0.8632 45 1 11.4649 3.1500 2.3769 46 1 14.8465 3.8500 1.0970 47 1 3.7413 -0.0026 2.8154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157642217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:21 Heat of formation + Delta-G solvation = -52.385283 kcal Electronic energy + Delta-G solvation = -27218.799299 eV Core-core repulsion = 23335.059309 eV Total energy + Delta-G solvation = -3883.739989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36442 -37.50639 -37.48710 -36.63454 -36.00166 -33.83557 -32.75732 -32.27452 -31.73950 -29.70447 -29.14153 -26.71024 -24.29291 -24.10544 -23.44548 -22.56490 -22.19234 -20.55734 -19.16223 -18.19802 -17.85952 -17.37425 -17.06899 -16.51954 -16.18613 -15.28345 -15.10681 -14.77880 -14.54046 -14.49641 -14.34042 -14.20555 -14.10967 -13.82825 -13.51144 -13.21097 -13.17645 -12.47945 -12.41219 -12.29267 -12.26592 -12.21724 -12.12736 -12.06196 -11.95581 -11.41151 -11.36715 -11.12070 -11.02890 -10.86624 -10.66711 -10.63669 -10.07315 -9.84211 -9.75934 -9.62187 -9.42208 -9.25618 -8.47298 -8.05482 -6.12152 -4.15431 0.19699 0.79156 1.15454 2.69177 3.03057 3.24628 3.31516 3.34509 3.48890 3.66847 4.06504 4.32111 4.36256 4.37827 4.62575 4.69288 4.77706 4.89243 4.96502 5.00026 5.01053 5.06469 5.17861 5.24136 5.34155 5.39395 5.46223 5.50864 5.54221 5.55061 5.66580 5.72232 5.83066 5.84645 5.85555 5.91036 6.19004 6.26506 6.36927 6.48504 6.78423 6.88462 7.40375 7.49005 7.59819 7.85247 7.91506 8.26313 8.90651 9.49570 10.99061 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.001892 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.573418 B =14799.340544 C =15070.073463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 N -0.998 5.998 4 C 0.111 3.889 5 C -0.178 4.178 6 S 2.703 3.297 7 O -0.959 6.959 8 O -0.961 6.961 9 C -0.804 4.804 10 C 0.059 3.941 11 C -0.255 4.255 12 C 0.449 3.551 13 N -0.702 5.702 14 C 0.115 3.885 15 C -0.121 4.121 16 C 0.025 3.975 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 N -0.559 5.559 26 C 0.254 3.746 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.408 0.592 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.262 0.738 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.189 -4.981 -6.023 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.005 4.005 3 N -0.836 5.836 4 C -0.014 4.014 5 C -0.237 4.237 6 S 2.794 3.206 7 O -0.950 6.950 8 O -0.952 6.952 9 C -0.898 4.898 10 C 0.033 3.967 11 C -0.281 4.281 12 C 0.210 3.790 13 N -0.328 5.328 14 C -0.008 4.008 15 C -0.159 4.159 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 N -0.277 5.277 26 C 0.090 3.910 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.244 0.756 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -27.127 -4.953 -5.199 28.062 hybrid contribution 1.707 -0.211 -0.214 1.733 sum -25.420 -5.163 -5.414 26.498 Atomic orbital electron populations 1.22220 0.95723 1.02563 1.02754 1.21233 0.94690 0.81200 1.03364 1.57655 1.79710 1.23945 1.22302 1.21377 0.98058 0.97179 0.84801 1.22283 0.97407 1.02541 1.01451 1.01577 0.73504 0.73185 0.72304 1.93562 1.70231 1.75543 1.55630 1.93549 1.86600 1.29845 1.85161 1.31282 1.25747 1.10051 1.22733 1.20915 0.91392 0.94726 0.89640 1.21541 0.97878 1.00518 1.08167 1.18776 0.85998 0.88147 0.86056 1.45252 1.01631 1.28610 1.57306 1.21910 0.86398 0.93302 0.99153 1.21898 0.92258 1.00860 1.00915 1.19028 0.91335 0.94236 0.96634 1.21175 0.90999 1.08981 1.35118 0.92594 1.25024 0.99416 0.94909 0.95081 1.69951 1.28346 1.16468 1.38483 0.86556 0.83604 0.78613 0.79013 1.20608 1.21135 1.19860 1.67329 1.00704 1.32613 1.27045 1.22097 0.92059 0.90765 0.86059 0.91736 0.92300 0.91357 0.90285 0.89999 0.89933 0.88847 0.91184 0.92335 0.92088 0.83713 0.83872 0.75585 0.91501 0.91452 0.92391 0.92415 0.96252 0.96212 0.92844 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.12 0.73 6.07 -4.04 -0.02 0.71 16 3 N -1.00 -7.61 2.78 -114.38 -0.32 -7.93 16 4 C 0.11 0.69 6.40 -4.04 -0.03 0.67 16 5 C -0.18 -1.10 10.24 37.16 0.38 -0.71 16 6 S 2.70 28.60 5.66 -107.50 -0.61 27.99 16 7 O -0.96 -11.93 16.27 -57.17 -0.93 -12.86 16 8 O -0.96 -12.34 15.91 -57.17 -0.91 -13.25 16 9 C -0.80 -9.05 5.99 -39.42 -0.24 -9.29 16 10 C 0.06 0.67 8.56 -39.32 -0.34 0.34 16 11 C -0.26 -3.21 9.33 -39.22 -0.37 -3.57 16 12 C 0.45 6.24 7.65 -155.03 -1.19 5.06 16 13 N -0.70 -9.66 5.73 -60.42 -0.35 -10.00 16 14 C 0.12 1.72 4.89 -4.04 -0.02 1.70 16 15 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 16 C 0.03 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 N -0.56 -7.72 10.39 -12.44 -0.13 -7.85 16 26 C 0.25 3.02 10.68 -17.57 -0.19 2.84 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 31 H 0.08 0.48 7.61 -51.93 -0.40 0.09 16 32 H 0.08 0.37 8.11 -51.93 -0.42 -0.06 16 33 H 0.09 0.63 6.91 -51.93 -0.36 0.27 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 7.02 -51.93 -0.36 0.06 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.15 1.35 7.70 -52.49 -0.40 0.95 16 38 H 0.14 1.65 6.71 -52.49 -0.35 1.30 16 39 H 0.41 5.32 8.60 -40.82 -0.35 4.97 16 40 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 41 H 0.07 0.99 7.93 -51.92 -0.41 0.58 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.17 1.57 7.62 -52.48 -0.40 1.17 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -32.87 399.29 -11.46 -44.33 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.64 Total: 0.47 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.31 Total: -17.76 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.06 Total: -50.94 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.84 Total: -26.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 28.60 SS G_CDS: -0.61 Total: 27.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.87 -11.46 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.057 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds