Wall clock time and date at job start Wed Apr 1 2020 01:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46732 * 2 1 4 4 C 1.46495 * 120.00043 * 275.00163 * 3 2 1 5 5 C 1.53007 * 109.46972 * 274.99909 * 4 3 2 6 6 S 1.65602 * 119.99616 * 95.00346 * 3 2 1 7 7 O 1.42100 * 106.40442 * 336.45391 * 6 3 2 8 8 O 1.42107 * 106.39710 * 203.53820 * 6 3 2 9 9 C 1.76196 * 107.21973 * 90.00082 * 6 3 2 10 10 C 1.38874 * 120.33833 * 89.99629 * 9 6 3 11 11 C 1.38305 * 118.50806 * 180.02562 * 10 9 6 12 12 C 1.39143 * 119.09428 * 0.02562 * 11 10 9 13 13 N 1.38992 * 119.70430 * 179.97438 * 12 11 10 14 14 C 1.46503 * 120.00445 * 359.97438 * 13 12 11 15 15 C 1.52994 * 109.47623 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47151 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47102 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99625 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00160 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46881 * 90.00344 * 21 19 17 23 23 H 1.48496 * 109.47381 * 209.99970 * 21 19 17 24 24 H 1.48493 * 109.47239 * 330.00498 * 21 19 17 25 25 N 1.32396 * 120.58609 * 0.02562 * 12 11 10 26 26 C 1.31970 * 121.62524 * 359.97438 * 25 12 11 27 27 H 1.08998 * 109.47477 * 299.99642 * 1 2 3 28 28 H 1.09001 * 109.47524 * 59.99885 * 1 2 3 29 29 H 1.08998 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46994 * 240.00520 * 2 1 3 31 31 H 1.08995 * 109.47099 * 120.00059 * 2 1 3 32 32 H 1.08997 * 109.47147 * 35.00088 * 4 3 2 33 33 H 1.08999 * 109.47342 * 155.00657 * 4 3 2 34 34 H 1.09000 * 109.46838 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47331 * 300.00067 * 5 4 3 36 36 H 1.09001 * 109.46886 * 59.99897 * 5 4 3 37 37 H 1.08001 * 120.74845 * 0.02562 * 10 9 6 38 38 H 1.07994 * 120.45256 * 179.72768 * 11 10 9 39 39 H 0.97002 * 119.99871 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.47011 * 300.00902 * 14 13 12 41 41 H 1.09010 * 109.46557 * 60.00012 * 14 13 12 42 42 H 1.09005 * 109.46709 * 300.00119 * 15 14 13 43 43 H 1.09000 * 109.47098 * 59.99825 * 15 14 13 44 44 H 1.08997 * 109.47203 * 299.99744 * 16 15 14 45 45 H 1.08995 * 109.47240 * 59.99945 * 16 15 14 46 46 H 0.96999 * 120.00055 * 179.97438 * 20 19 17 47 47 H 1.08004 * 119.56936 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2638 5 6 3.5151 1.7841 -1.8917 6 16 2.4121 2.1202 1.4287 7 8 1.6868 1.4415 2.4448 8 8 2.3055 3.5186 1.1999 9 6 4.1169 1.7942 1.7320 10 6 5.0923 2.6605 1.2557 11 6 6.4188 2.3677 1.5151 12 6 6.7295 1.2213 2.2400 13 7 8.0585 0.9146 2.5075 14 6 9.1250 1.7964 2.0264 15 6 10.4826 1.2342 2.4525 16 6 11.5963 2.1555 1.9506 17 6 12.9337 1.6014 2.3697 18 1 12.9841 0.6841 2.9377 19 6 14.0927 2.2654 2.0282 20 7 14.0312 3.3826 1.3370 21 14 15.7503 1.5790 2.5483 22 1 16.2592 0.6634 1.4957 23 1 16.7105 2.6955 2.7395 24 1 15.5990 0.8324 3.8230 25 7 5.7704 0.4196 2.6762 26 6 4.4966 0.6740 2.4435 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3616 1.8098 -1.9452 33 1 2.0921 3.1803 -1.0755 34 1 3.6193 2.3257 -2.8319 35 1 4.3116 2.0830 -1.2104 36 1 3.5812 0.7125 -2.0800 37 1 4.8210 3.5430 0.6953 38 1 7.2031 3.0174 1.1559 39 1 8.2799 0.1164 3.0121 40 1 9.0826 1.8580 0.9390 41 1 8.9935 2.7913 2.4521 42 1 10.5252 1.1724 3.5400 43 1 10.6139 0.2395 2.0266 44 1 11.5539 2.2177 0.8632 45 1 11.4649 3.1500 2.3769 46 1 14.8465 3.8500 1.0970 47 1 3.7413 -0.0026 2.8154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157642217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:20 Heat of formation + Delta-G solvation = -73.613942 kcal Electronic energy + Delta-G solvation = -27219.719843 eV Core-core repulsion = 23335.059309 eV Total energy + Delta-G solvation = -3884.660533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34739 -38.40567 -38.06217 -37.84052 -36.93110 -35.58364 -33.85854 -33.27914 -32.76480 -30.92063 -29.67475 -28.32372 -25.58883 -24.73024 -24.52028 -23.56622 -22.97981 -22.12564 -19.96798 -19.05011 -18.68166 -18.62078 -18.27704 -17.83972 -17.06226 -16.54214 -16.53341 -15.92884 -15.65097 -15.48265 -15.33226 -15.01182 -14.81846 -14.47645 -14.31187 -14.30247 -14.05167 -13.83007 -13.73510 -13.72030 -13.21821 -13.14423 -12.95191 -12.83376 -12.65863 -12.62802 -12.59172 -12.42832 -12.23521 -11.99403 -11.83461 -11.65589 -11.51870 -11.40522 -11.23645 -10.91638 -10.68812 -10.56919 -10.05089 -9.08679 -8.22448 -6.32719 -0.63474 -0.16839 0.20676 1.40026 1.40513 1.51337 1.89801 2.00533 2.39983 2.56534 2.78912 3.11755 3.22682 3.45566 3.73621 3.78783 3.93156 3.98837 4.14793 4.15160 4.28481 4.31521 4.48561 4.50503 4.52950 4.59629 4.63883 4.71913 4.72606 4.75029 4.88757 4.92410 4.94557 5.07623 5.10236 5.11488 5.33064 5.35906 5.38546 5.46068 5.48672 5.68569 5.71850 5.79195 5.82031 6.21153 6.36445 6.83859 6.90805 7.36639 8.89051 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.001892 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.573418 B =14799.340544 C =15070.073463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 N -0.991 5.991 4 C 0.106 3.894 5 C -0.178 4.178 6 S 2.718 3.282 7 O -0.979 6.979 8 O -0.985 6.985 9 C -0.800 4.800 10 C 0.060 3.940 11 C -0.265 4.265 12 C 0.434 3.566 13 N -0.704 5.704 14 C 0.132 3.868 15 C -0.106 4.106 16 C 0.027 3.973 17 C -0.544 4.544 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.265 1.265 25 N -0.574 5.574 26 C 0.246 3.754 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.411 0.589 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.000 1.000 45 H -0.001 1.001 46 H 0.264 0.736 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.100 -6.119 -6.627 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 N -0.831 5.831 4 C -0.018 4.018 5 C -0.237 4.237 6 S 2.809 3.191 7 O -0.969 6.969 8 O -0.975 6.975 9 C -0.893 4.893 10 C 0.034 3.966 11 C -0.290 4.290 12 C 0.196 3.804 13 N -0.331 5.331 14 C 0.008 3.992 15 C -0.144 4.144 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.189 1.189 25 N -0.293 5.293 26 C 0.083 3.917 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.247 0.753 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.072 0.928 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -28.063 -6.105 -5.792 29.298 hybrid contribution 1.860 0.139 -0.086 1.868 sum -26.203 -5.966 -5.878 27.508 Atomic orbital electron populations 1.22236 0.95429 1.03429 1.02227 1.21488 0.94985 0.80272 1.04555 1.57478 1.79206 1.24703 1.21694 1.21559 0.99046 0.96816 0.84375 1.22292 0.96762 1.02963 1.01674 1.01035 0.72937 0.72564 0.72610 1.93532 1.70523 1.75766 1.57121 1.93515 1.86770 1.31544 1.85678 1.31466 1.26227 1.09594 1.21965 1.21190 0.90982 0.95202 0.89255 1.21697 0.98671 1.00398 1.08262 1.18912 0.85898 0.88805 0.86799 1.44998 1.01463 1.28650 1.57954 1.21560 0.85123 0.93190 0.99331 1.21595 0.92235 0.99755 1.00788 1.18915 0.92530 0.94328 0.95312 1.21668 0.92542 1.09136 1.34842 0.92175 1.25930 1.03443 0.95237 0.95159 1.70073 1.29384 1.17809 1.39752 0.85490 0.78856 0.77990 0.78972 1.19838 1.20893 1.18922 1.67318 1.01338 1.33063 1.27550 1.22484 0.91874 0.91384 0.85983 0.93668 0.91409 0.89850 0.88040 0.89921 0.87496 0.89449 0.89980 0.93690 0.91687 0.81901 0.83175 0.75292 0.91078 0.91393 0.92181 0.91958 0.98165 0.98309 0.92752 0.79668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 71.98 0.74 -0.94 16 2 C 0.11 1.12 6.07 86.38 0.52 1.64 16 3 N -0.99 -13.40 2.78 -515.79 -1.44 -14.83 16 4 C 0.11 1.11 6.40 86.38 0.55 1.66 16 5 C -0.18 -1.84 10.24 71.98 0.74 -1.10 16 6 S 2.72 54.87 5.66 -56.49 -0.32 54.55 16 7 O -0.98 -23.61 16.27 -128.00 -2.08 -25.70 16 8 O -0.98 -24.55 15.91 -128.00 -2.04 -26.58 16 9 C -0.80 -17.19 5.99 22.37 0.13 -17.06 16 10 C 0.06 1.30 8.56 22.44 0.19 1.49 16 11 C -0.26 -6.45 9.33 22.50 0.21 -6.24 16 12 C 0.43 11.77 7.65 133.07 1.02 12.79 16 13 N -0.70 -18.91 5.73 -345.07 -1.98 -20.89 16 14 C 0.13 3.86 4.89 86.38 0.42 4.28 16 15 C -0.11 -3.82 5.27 30.59 0.16 -3.66 16 16 C 0.03 1.30 4.97 29.85 0.15 1.45 16 17 C -0.54 -29.52 9.11 25.60 0.23 -29.29 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.00 0.02 5.46 84.65 0.46 0.49 16 20 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 21 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 N -0.57 -15.41 10.39 -193.26 -2.01 -17.42 16 26 C 0.25 5.59 10.68 84.62 0.90 6.50 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.59 8.11 -2.39 -0.02 0.58 16 31 H 0.08 0.82 7.61 -2.39 -0.02 0.81 16 32 H 0.11 0.63 8.11 -2.39 -0.02 0.61 16 33 H 0.09 1.05 6.91 -2.39 -0.02 1.03 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.59 7.02 -2.39 -0.02 0.57 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.16 2.85 7.70 -2.91 -0.02 2.83 16 38 H 0.15 3.36 6.71 -2.91 -0.02 3.34 16 39 H 0.41 10.45 8.60 -92.71 -0.80 9.65 16 40 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 41 H 0.07 1.99 7.93 -2.38 -0.02 1.97 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.19 3.29 7.62 -2.91 -0.02 3.27 16 Total: -1.00 -70.16 399.29 -0.95 -71.11 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.16 Total: 17.10 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 6.44 Total: -27.99 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.14 Total: -107.55 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -4.12 Total: -52.28 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 54.87 SS G_CDS: -0.32 Total: 54.55 kcal Total: -70.16 -0.95 -71.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.507 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds