Wall clock time and date at job start Wed Apr 1 2020 00:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47795 * 2 1 4 4 C 1.50699 * 109.46810 * 239.99791 * 2 1 3 5 5 N 1.34788 * 119.99766 * 72.13872 * 4 2 1 6 6 O 1.21278 * 120.00897 * 252.13470 * 4 2 1 7 7 N 1.46903 * 109.47128 * 120.00435 * 2 1 3 8 8 C 1.46838 * 111.00140 * 286.78230 * 7 2 1 9 9 C 1.50138 * 110.27815 * 174.31328 * 8 7 2 10 10 C 1.29825 * 123.28712 * 342.97370 * 9 8 7 11 11 C 1.50695 * 118.55930 * 180.34848 * 10 9 8 12 12 C 1.53000 * 109.47131 * 94.99608 * 11 10 9 13 13 N 1.46497 * 109.47108 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00411 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00500 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47327 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00268 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99589 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99964 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00468 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99797 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47061 * 60.00252 * 22 20 18 24 24 H 1.48499 * 109.47262 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47318 * 300.00547 * 22 20 18 26 26 C 1.50313 * 122.88869 * 0.37356 * 10 9 8 27 27 C 1.47243 * 111.00138 * 49.71483 * 7 2 1 28 28 H 1.09001 * 109.47501 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47443 * 59.99762 * 1 2 3 30 30 H 1.09002 * 109.46700 * 299.99513 * 1 2 3 31 31 H 0.97001 * 119.99719 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99956 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.34053 * 294.56487 * 8 7 2 34 34 H 1.09004 * 109.33625 * 54.22999 * 8 7 2 35 35 H 1.08004 * 118.35645 * 162.94973 * 9 8 7 36 36 H 1.08996 * 109.47523 * 215.00504 * 11 10 9 37 37 H 1.09005 * 109.46901 * 334.99665 * 11 10 9 38 38 H 1.08993 * 109.47196 * 300.00598 * 12 11 10 39 39 H 1.09000 * 109.46903 * 60.00889 * 12 11 10 40 40 H 0.97009 * 119.99894 * 0.02562 * 13 12 11 41 41 H 1.08999 * 109.46871 * 299.99738 * 16 14 13 42 42 H 1.08999 * 109.47255 * 59.99965 * 16 14 13 43 43 H 0.96997 * 120.00441 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.42996 * 103.55300 * 26 10 9 45 45 H 1.08998 * 109.42921 * 223.45716 * 26 10 9 46 46 H 1.09001 * 109.63196 * 287.50221 * 27 7 2 47 47 H 1.09006 * 109.63313 * 48.11220 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 7 1.9192 -0.1256 -2.4396 6 8 2.5381 -1.8084 -1.1329 7 7 2.0196 -0.6926 1.1994 8 6 1.8219 0.1299 2.3996 9 6 2.1987 -0.6449 3.6292 10 6 2.3244 -1.9369 3.6466 11 6 2.6996 -2.6069 4.9433 12 6 1.4321 -3.0764 5.6601 13 7 1.7968 -3.7271 6.9210 14 6 0.8363 -4.2236 7.7256 15 8 -0.3300 -4.1320 7.4057 16 6 1.2114 -4.8924 9.0229 17 16 -0.2879 -5.4494 9.8702 18 6 0.4250 -6.1724 11.3102 19 1 1.4970 -6.1697 11.4415 20 6 -0.3911 -6.7452 12.2757 21 7 -1.6975 -6.7489 12.1155 22 14 0.3648 -7.5123 13.8021 23 1 1.1316 -6.4812 14.5463 24 1 -0.7125 -8.0515 14.6704 25 1 1.2763 -8.6146 13.4026 26 6 2.1127 -2.7940 2.4301 27 6 1.3575 -1.9976 1.3624 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 1.5143 0.7523 -2.5177 32 1 2.2429 -0.5828 -3.2316 33 1 2.4428 1.0231 2.3315 34 1 0.7742 0.4231 2.4677 35 1 2.3743 -0.1000 4.5451 36 1 3.3395 -3.4648 4.7372 37 1 3.2341 -1.8988 5.5767 38 1 0.7922 -2.2184 5.8662 39 1 0.8976 -3.7845 5.0268 40 1 2.7296 -3.8007 7.1767 41 1 1.8521 -5.7500 8.8175 42 1 1.7451 -4.1837 9.6561 43 1 -2.2678 -7.1496 12.7901 44 1 3.0789 -3.1064 2.0341 45 1 1.5310 -3.6743 2.7035 46 1 0.3251 -1.8476 1.6783 47 1 1.3795 -2.5401 0.4172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159332828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:32 Heat of formation + Delta-G solvation = -60.194704 kcal Electronic energy + Delta-G solvation = -26315.643123 eV Core-core repulsion = 22431.564491 eV Total energy + Delta-G solvation = -3884.078631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73151 -39.26094 -38.72147 -36.18454 -34.43732 -33.96232 -32.40947 -31.44858 -31.11590 -29.67625 -28.01256 -25.75385 -25.41848 -24.13587 -23.52200 -21.90317 -20.48294 -20.32454 -17.99407 -17.85565 -17.68262 -17.16495 -16.37028 -16.04835 -15.78418 -15.72520 -15.41929 -15.06454 -14.86575 -14.78521 -14.41621 -14.09316 -14.04544 -13.58146 -13.43043 -13.30917 -13.07812 -12.73243 -12.54833 -12.52817 -12.32931 -12.11692 -11.96358 -11.70694 -11.43696 -11.07129 -11.02508 -11.01732 -10.89253 -10.74575 -10.16778 -10.01980 -9.80509 -9.38186 -9.07510 -9.04262 -8.83082 -8.63922 -8.21468 -6.47710 -6.19443 -3.90005 1.95533 2.20796 2.85941 3.08613 3.14521 3.25153 3.29293 3.34050 3.56709 3.76586 4.22679 4.29149 4.33953 4.49960 4.50861 4.63766 4.86087 4.90504 4.94606 5.03122 5.05966 5.08060 5.14837 5.15596 5.23891 5.27878 5.37289 5.48854 5.50820 5.62639 5.67058 5.77274 5.84038 5.92958 5.94688 6.02298 6.12646 6.17064 6.31626 6.60206 6.62706 6.67459 6.78217 6.89757 7.61263 7.75804 7.83851 8.37098 8.65970 9.25637 10.87942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.001512 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.178635 B =18516.143441 C =18644.459043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.061 3.939 3 H 0.106 0.894 4 C 0.524 3.476 5 N -0.858 5.858 6 O -0.522 6.522 7 N -0.511 5.511 8 C 0.085 3.915 9 C -0.163 4.163 10 C -0.100 4.100 11 C -0.098 4.098 12 C 0.128 3.872 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.078 4.078 27 C 0.047 3.953 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.038 0.962 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 18.121 -28.442 35.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.052 4.052 3 H 0.124 0.876 4 C 0.308 3.692 5 N -0.423 5.423 6 O -0.396 6.396 7 N -0.235 5.235 8 C -0.042 4.042 9 C -0.182 4.182 10 C -0.101 4.101 11 C -0.136 4.136 12 C 0.004 3.996 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.116 4.116 27 C -0.080 4.080 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.180 17.419 -28.685 34.542 hybrid contribution 1.393 -0.084 1.212 1.848 sum 9.573 17.335 -27.473 33.866 Atomic orbital electron populations 1.22421 0.94786 1.03722 1.03429 1.21615 0.94501 0.98839 0.90219 0.87608 1.20456 0.77982 0.86057 0.84709 1.43869 1.65751 1.23498 1.09156 1.90732 1.42752 1.20190 1.85960 1.62341 1.56853 1.03542 1.00798 1.20978 0.99628 0.95868 0.87754 1.21975 1.03299 0.94985 0.97907 1.20805 0.99567 0.94680 0.95043 1.20917 0.97481 1.01032 0.94128 1.21207 0.96197 0.97458 0.84751 1.46026 1.09961 1.61595 1.21887 1.20307 0.85448 0.77659 0.84893 1.90700 1.18553 1.56167 1.73888 1.23532 1.07441 1.02790 0.96644 1.85389 1.03141 1.73993 1.20886 1.22836 0.95399 1.43845 1.06380 0.90974 1.24984 0.94713 0.95535 0.98303 1.70006 1.02972 1.42418 1.34923 0.86226 0.78674 0.79346 0.81258 1.19947 1.20814 1.19943 1.20491 1.01572 0.97286 0.92211 1.22402 0.95061 0.89869 1.00683 0.91235 0.91374 0.90920 0.77210 0.76690 0.89760 0.93327 0.86857 0.90453 0.90688 0.91716 0.91632 0.76842 0.89216 0.89238 0.92144 0.89827 0.90443 0.94389 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 8.37 37.16 0.31 -0.53 16 2 C 0.06 0.35 2.71 -68.87 -0.19 0.17 16 3 H 0.11 0.39 8.04 -51.93 -0.42 -0.02 16 4 C 0.52 3.83 7.17 -10.98 -0.08 3.75 16 5 N -0.86 -2.77 8.87 31.22 0.28 -2.49 16 6 O -0.52 -6.19 15.11 5.56 0.08 -6.11 16 7 N -0.51 -4.25 4.43 -229.50 -1.02 -5.27 16 8 C 0.08 0.62 5.50 -5.28 -0.03 0.59 16 9 C -0.16 -1.40 9.50 -35.97 -0.34 -1.74 16 10 C -0.10 -0.93 5.15 -100.93 -0.52 -1.45 16 11 C -0.10 -0.89 5.38 -27.89 -0.15 -1.04 16 12 C 0.13 1.56 5.66 -4.04 -0.02 1.54 16 13 N -0.74 -10.18 5.56 -60.30 -0.33 -10.52 16 14 C 0.53 10.19 7.85 -10.99 -0.09 10.11 16 15 O -0.52 -12.14 15.86 5.55 0.09 -12.05 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 C -0.08 -0.75 6.04 -28.01 -0.17 -0.92 16 27 C 0.05 0.44 4.02 -3.58 -0.01 0.42 16 28 H 0.07 0.42 6.59 -51.93 -0.34 0.08 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.32 6.71 -51.93 -0.35 -0.03 16 31 H 0.40 0.06 8.83 -40.82 -0.36 -0.30 16 32 H 0.40 1.09 8.93 -40.82 -0.36 0.73 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.32 6.57 -51.93 -0.34 -0.02 16 35 H 0.11 0.88 7.81 -52.48 -0.41 0.47 16 36 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 37 H 0.07 0.61 7.85 -51.93 -0.41 0.21 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.04 0.34 6.97 -51.93 -0.36 -0.02 16 47 H 0.10 1.01 5.82 -51.93 -0.30 0.71 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -38.10 394.95 -9.67 -47.77 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.35 Total: 0.89 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.87 Total: -5.16 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.34 Total: -43.93 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.10 -9.67 -47.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.429 kcal (2) G-P(sol) polarization free energy of solvation -38.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds