Wall clock time and date at job start Wed Apr 1 2020 00:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47795 * 2 1 4 4 C 1.50699 * 109.46810 * 239.99791 * 2 1 3 5 5 N 1.34788 * 119.99766 * 72.13872 * 4 2 1 6 6 O 1.21278 * 120.00897 * 252.13470 * 4 2 1 7 7 N 1.46903 * 109.47128 * 120.00435 * 2 1 3 8 8 C 1.46838 * 111.00140 * 286.78230 * 7 2 1 9 9 C 1.50138 * 110.27815 * 174.31328 * 8 7 2 10 10 C 1.29825 * 123.28712 * 342.97370 * 9 8 7 11 11 C 1.50695 * 118.55930 * 180.34848 * 10 9 8 12 12 C 1.53000 * 109.47131 * 94.99608 * 11 10 9 13 13 N 1.46497 * 109.47108 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00411 * 180.02562 * 13 12 11 15 15 O 1.21286 * 119.99849 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00500 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47327 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00268 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99589 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99964 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00468 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99797 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47061 * 60.00252 * 22 20 18 24 24 H 1.48499 * 109.47262 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47318 * 300.00547 * 22 20 18 26 26 C 1.50313 * 122.88869 * 0.37356 * 10 9 8 27 27 C 1.47243 * 111.00138 * 49.71483 * 7 2 1 28 28 H 1.09001 * 109.47501 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47443 * 59.99762 * 1 2 3 30 30 H 1.09002 * 109.46700 * 299.99513 * 1 2 3 31 31 H 0.97001 * 119.99719 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99956 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.34053 * 294.56487 * 8 7 2 34 34 H 1.09004 * 109.33625 * 54.22999 * 8 7 2 35 35 H 1.08004 * 118.35645 * 162.94973 * 9 8 7 36 36 H 1.08996 * 109.47523 * 215.00504 * 11 10 9 37 37 H 1.09005 * 109.46901 * 334.99665 * 11 10 9 38 38 H 1.08993 * 109.47196 * 300.00598 * 12 11 10 39 39 H 1.09000 * 109.46903 * 60.00889 * 12 11 10 40 40 H 0.97009 * 119.99894 * 0.02562 * 13 12 11 41 41 H 1.08999 * 109.46871 * 299.99738 * 16 14 13 42 42 H 1.08999 * 109.47255 * 59.99965 * 16 14 13 43 43 H 0.96997 * 120.00441 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.42996 * 103.55300 * 26 10 9 45 45 H 1.08998 * 109.42921 * 223.45716 * 26 10 9 46 46 H 1.09001 * 109.63196 * 287.50221 * 27 7 2 47 47 H 1.09006 * 109.63313 * 48.11220 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 7 1.9192 -0.1256 -2.4396 6 8 2.5381 -1.8084 -1.1329 7 7 2.0196 -0.6926 1.1994 8 6 1.8219 0.1299 2.3996 9 6 2.1987 -0.6449 3.6292 10 6 2.3244 -1.9369 3.6466 11 6 2.6996 -2.6069 4.9433 12 6 1.4321 -3.0764 5.6601 13 7 1.7968 -3.7271 6.9210 14 6 0.8363 -4.2236 7.7256 15 8 -0.3300 -4.1320 7.4057 16 6 1.2114 -4.8924 9.0229 17 16 -0.2879 -5.4494 9.8702 18 6 0.4250 -6.1724 11.3102 19 1 1.4970 -6.1697 11.4415 20 6 -0.3911 -6.7452 12.2757 21 7 -1.6975 -6.7489 12.1155 22 14 0.3648 -7.5123 13.8021 23 1 1.1316 -6.4812 14.5463 24 1 -0.7125 -8.0515 14.6704 25 1 1.2763 -8.6146 13.4026 26 6 2.1127 -2.7940 2.4301 27 6 1.3575 -1.9976 1.3624 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 1.5143 0.7523 -2.5177 32 1 2.2429 -0.5828 -3.2316 33 1 2.4428 1.0231 2.3315 34 1 0.7742 0.4231 2.4677 35 1 2.3743 -0.1000 4.5451 36 1 3.3395 -3.4648 4.7372 37 1 3.2341 -1.8988 5.5767 38 1 0.7922 -2.2184 5.8662 39 1 0.8976 -3.7845 5.0268 40 1 2.7296 -3.8007 7.1767 41 1 1.8521 -5.7500 8.8175 42 1 1.7451 -4.1837 9.6561 43 1 -2.2678 -7.1496 12.7901 44 1 3.0789 -3.1064 2.0341 45 1 1.5310 -3.6743 2.7035 46 1 0.3251 -1.8476 1.6783 47 1 1.3795 -2.5401 0.4172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159332828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:31 Heat of formation + Delta-G solvation = -91.321369 kcal Electronic energy + Delta-G solvation = -26316.992876 eV Core-core repulsion = 22431.564491 eV Total energy + Delta-G solvation = -3885.428385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30694 -40.62296 -39.47483 -37.05446 -35.36418 -34.61336 -34.57506 -32.34290 -31.78382 -30.86426 -28.97869 -27.65553 -26.29961 -24.81166 -24.29678 -22.66593 -21.81107 -20.95751 -19.83787 -18.45007 -18.37867 -17.85802 -17.63885 -17.22886 -16.87215 -16.78268 -16.60944 -16.19899 -15.79892 -15.72623 -15.55859 -15.29282 -14.83891 -14.72811 -14.55247 -14.18887 -14.13341 -13.89201 -13.57438 -13.24876 -13.16670 -13.09250 -12.97037 -12.85929 -12.78908 -12.63099 -12.35905 -12.26829 -11.79767 -11.73895 -11.56546 -11.12400 -10.97816 -10.69245 -10.54982 -10.27883 -10.13016 -9.76065 -9.22568 -8.66747 -8.33916 -6.12508 1.20955 1.31190 1.44640 1.48179 1.58076 1.60943 1.68349 2.27444 2.33222 2.43080 3.00100 3.04800 3.32515 3.72599 3.83463 3.95136 3.96319 4.05049 4.13204 4.14647 4.19332 4.30677 4.34856 4.40165 4.42449 4.51350 4.52714 4.61263 4.65413 4.70501 4.82435 4.92385 4.96011 5.05326 5.10456 5.16076 5.21667 5.41916 5.42827 5.51648 5.94471 5.99648 6.00948 6.17535 6.20136 6.51530 6.54932 7.07075 7.24670 7.42226 8.75118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.001512 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.178635 B =18516.143441 C =18644.459043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 H 0.134 0.866 4 C 0.518 3.482 5 N -0.838 5.838 6 O -0.577 6.577 7 N -0.526 5.526 8 C 0.082 3.918 9 C -0.158 4.158 10 C -0.119 4.119 11 C -0.083 4.083 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 C -0.078 4.078 27 C 0.054 3.946 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.417 0.583 32 H 0.406 0.594 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.418 0.582 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 19.895 -28.522 36.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.051 4.051 3 H 0.152 0.848 4 C 0.303 3.697 5 N -0.402 5.402 6 O -0.456 6.456 7 N -0.251 5.251 8 C -0.045 4.045 9 C -0.176 4.176 10 C -0.120 4.120 11 C -0.121 4.121 12 C 0.007 3.993 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.696 4.696 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.115 4.115 27 C -0.074 4.074 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.238 0.762 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.054 0.946 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.362 19.259 -28.822 36.180 hybrid contribution 0.769 -0.510 1.054 1.401 sum 11.131 18.750 -27.768 35.306 Atomic orbital electron populations 1.22379 0.93751 1.02831 1.04830 1.21736 0.95246 0.99525 0.88579 0.84830 1.20821 0.77346 0.85489 0.86051 1.43713 1.64390 1.23984 1.08158 1.90714 1.45487 1.22524 1.86826 1.62303 1.57287 1.03434 1.02046 1.21090 1.00552 0.96019 0.86830 1.22284 1.01467 0.94895 0.98953 1.20787 1.01331 0.95072 0.94809 1.20802 0.95753 1.01681 0.93840 1.21289 0.97846 0.96520 0.83686 1.45772 1.10026 1.59552 1.21338 1.20108 0.85449 0.77722 0.84952 1.90690 1.20718 1.58409 1.74890 1.23375 1.03710 1.04038 0.96923 1.85583 1.09377 1.74952 1.22706 1.23185 0.95973 1.43930 1.06520 0.89847 1.26131 0.95100 0.95838 1.02019 1.70176 1.04763 1.43528 1.36313 0.84997 0.77873 0.78633 0.76440 1.18593 1.20379 1.18695 1.20439 1.00878 0.97422 0.92772 1.22224 0.94947 0.90647 0.99546 0.93258 0.88979 0.90479 0.75118 0.76222 0.87852 0.92405 0.85680 0.89651 0.89008 0.92649 0.93008 0.74523 0.87164 0.87035 0.91988 0.91020 0.91055 0.94610 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 8.37 71.98 0.60 -0.73 16 2 C 0.06 0.61 2.71 44.17 0.12 0.73 16 3 H 0.13 0.57 8.04 -2.39 -0.02 0.55 16 4 C 0.52 7.20 7.17 87.65 0.63 7.83 16 5 N -0.84 -4.10 8.87 -173.52 -1.54 -5.64 16 6 O -0.58 -14.12 15.11 -3.02 -0.05 -14.17 16 7 N -0.53 -8.25 4.43 -880.01 -3.90 -12.15 16 8 C 0.08 1.02 5.50 85.39 0.47 1.49 16 9 C -0.16 -2.41 9.50 26.68 0.25 -2.16 16 10 C -0.12 -2.10 5.15 -15.40 -0.08 -2.18 16 11 C -0.08 -1.35 5.38 29.85 0.16 -1.19 16 12 C 0.13 3.06 5.66 86.38 0.49 3.55 16 13 N -0.71 -18.41 5.56 -463.08 -2.57 -20.98 16 14 C 0.53 20.14 7.85 87.66 0.69 20.83 16 15 O -0.57 -27.20 15.86 -3.05 -0.05 -27.25 16 16 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.95 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.80 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 22 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 C -0.08 -1.53 6.04 29.76 0.18 -1.35 16 27 C 0.05 1.03 4.02 86.28 0.35 1.38 16 28 H 0.05 0.59 6.59 -2.39 -0.02 0.57 16 29 H 0.09 0.22 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.53 6.71 -2.39 -0.02 0.51 16 31 H 0.42 -0.94 8.83 -92.71 -0.82 -1.76 16 32 H 0.41 1.73 8.93 -92.71 -0.83 0.90 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.64 6.57 -2.38 -0.02 0.62 16 35 H 0.13 1.60 7.81 -2.91 -0.02 1.58 16 36 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 37 H 0.09 1.22 7.85 -2.38 -0.02 1.20 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.42 7.63 8.47 -92.70 -0.79 6.84 16 41 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 0.67 6.97 -2.39 -0.02 0.65 16 47 H 0.08 1.77 5.82 -2.38 -0.01 1.76 16 Total: -1.00 -86.48 394.95 -2.96 -89.45 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -1.42 Total: 17.14 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.41 Total: -6.25 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -7.73 Total: -94.94 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.09 Total: -41.42 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -86.48 -2.96 -89.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.872 kcal (2) G-P(sol) polarization free energy of solvation -86.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds