Wall clock time and date at job start Wed Apr 1 2020 00:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47210 * 2 1 4 4 C 1.50695 * 109.47318 * 120.00348 * 2 1 3 5 5 N 1.34779 * 119.99939 * 299.99959 * 4 2 1 6 6 O 1.21283 * 120.00111 * 119.99778 * 4 2 1 7 7 N 1.46906 * 109.47191 * 240.00438 * 2 1 3 8 8 C 1.46761 * 111.14302 * 51.89944 * 7 2 1 9 9 C 1.50142 * 110.41820 * 174.11286 * 8 7 2 10 10 C 1.29821 * 123.28645 * 343.08797 * 9 8 7 11 11 C 1.50709 * 118.55623 * 180.37145 * 10 9 8 12 12 C 1.52994 * 109.46779 * 95.02004 * 11 10 9 13 13 N 1.46504 * 109.46979 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00208 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00307 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99923 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47068 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00085 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00060 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46999 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47647 * 119.99881 * 22 20 18 25 25 H 1.48502 * 109.46913 * 240.00115 * 22 20 18 26 26 C 1.50304 * 122.89323 * 0.39317 * 10 9 8 27 27 C 1.47239 * 111.00004 * 175.00027 * 7 2 1 28 28 H 1.08993 * 109.46958 * 299.99697 * 1 2 3 29 29 H 1.09003 * 109.47153 * 59.99565 * 1 2 3 30 30 H 1.08993 * 109.46934 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00161 * 359.97438 * 5 4 2 32 32 H 0.97000 * 120.00328 * 179.97438 * 5 4 2 33 33 H 1.08992 * 109.15568 * 53.89616 * 8 7 2 34 34 H 1.09005 * 109.24543 * 294.38832 * 8 7 2 35 35 H 1.08006 * 118.36072 * 163.06081 * 9 8 7 36 36 H 1.09000 * 109.46802 * 215.02348 * 11 10 9 37 37 H 1.09002 * 109.46837 * 335.02187 * 11 10 9 38 38 H 1.09000 * 109.47735 * 299.99773 * 12 11 10 39 39 H 1.09002 * 109.47286 * 60.00459 * 12 11 10 40 40 H 0.97004 * 119.99991 * 0.02562 * 13 12 11 41 41 H 1.08994 * 109.47372 * 299.99674 * 16 14 13 42 42 H 1.08999 * 109.47560 * 60.00062 * 16 14 13 43 43 H 0.97002 * 119.99975 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.43124 * 223.40516 * 26 10 9 45 45 H 1.09006 * 109.42944 * 103.55645 * 26 10 9 46 46 H 1.09002 * 109.63847 * 48.11079 * 27 7 2 47 47 H 1.08999 * 109.63658 * 287.70548 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7068 -0.2500 2.4545 6 8 2.7296 -1.6966 1.1190 7 7 2.0197 -0.6924 -1.1995 8 6 1.3998 -0.1498 -2.4141 9 6 2.0146 -0.7676 -3.6367 10 6 3.1486 -1.3994 -3.6223 11 6 3.6712 -1.9712 -4.9151 12 6 4.6395 -0.9764 -5.5581 13 7 5.1471 -1.5320 -6.8151 14 6 6.0207 -0.8260 -7.5598 15 8 6.3872 0.2692 -7.1891 16 6 6.5424 -1.3973 -8.8530 17 16 7.6881 -0.2206 -9.6138 18 6 8.1311 -1.1185 -11.0636 19 1 7.7075 -2.0954 -11.2443 20 6 9.0254 -0.5709 -11.9730 21 7 9.5421 0.6195 -11.7525 22 14 9.4945 -1.5225 -13.5104 23 1 8.7806 -2.8247 -13.5236 24 1 9.1161 -0.7379 -14.7131 25 1 10.9601 -1.7619 -13.5164 26 6 3.9631 -1.5861 -2.3730 27 6 3.4866 -0.6092 -1.2949 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1494 0.5388 2.5436 32 1 2.0298 -0.7075 3.2465 33 1 1.5500 0.9294 -2.4408 34 1 0.3314 -0.3653 -2.3993 35 1 1.4867 -0.6824 -4.5752 36 1 4.1921 -2.9073 -4.7139 37 1 2.8381 -2.1573 -5.5930 38 1 4.1186 -0.0404 -5.7592 39 1 5.4725 -0.7903 -4.8801 40 1 4.8538 -2.4078 -7.1117 41 1 7.0635 -2.3334 -8.6527 42 1 5.7090 -1.5832 -9.5305 43 1 10.1668 1.0024 -12.3882 44 1 5.0138 -1.3983 -2.5937 45 1 3.8460 -2.6084 -2.0132 46 1 3.9318 -0.8758 -0.3364 47 1 3.7791 0.4055 -1.5650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159332829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:34 Heat of formation + Delta-G solvation = -59.689235 kcal Electronic energy + Delta-G solvation = -26235.220136 eV Core-core repulsion = 22351.163424 eV Total energy + Delta-G solvation = -3884.056713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66096 -39.26398 -38.70286 -36.13290 -34.54099 -33.94238 -32.41238 -31.74069 -30.99669 -29.73100 -28.07363 -25.81381 -25.43294 -23.74543 -23.36617 -21.93417 -20.52627 -20.35752 -18.13082 -18.07151 -17.80384 -16.97131 -16.44086 -16.09260 -15.82031 -15.71005 -15.50726 -14.96673 -14.90217 -14.78907 -14.31019 -14.08413 -14.01267 -13.67724 -13.37032 -13.17641 -12.94002 -12.78681 -12.68855 -12.53007 -12.31199 -12.12029 -11.95384 -11.79531 -11.40501 -11.06488 -11.03334 -11.00073 -10.86280 -10.73215 -10.17753 -10.04254 -9.78907 -9.38383 -9.07999 -9.06029 -8.83224 -8.66341 -8.20795 -6.47911 -6.20146 -3.90386 1.95368 2.19032 2.84797 3.08554 3.14451 3.22872 3.29958 3.35371 3.48390 3.76528 4.22077 4.27316 4.38427 4.46875 4.54549 4.61672 4.89125 4.90036 4.96555 5.03090 5.04846 5.11580 5.15100 5.18210 5.24204 5.24833 5.35300 5.47826 5.50243 5.63609 5.66978 5.75390 5.83741 5.92151 5.94416 6.02157 6.12089 6.17030 6.30238 6.59184 6.62433 6.67283 6.77935 6.88875 7.61603 7.75778 7.82159 8.37182 8.65927 9.25330 10.87376 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038673 B = 0.001491 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.851847 B =18776.723312 C =18875.153251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.068 0.932 4 C 0.521 3.479 5 N -0.858 5.858 6 O -0.520 6.520 7 N -0.513 5.513 8 C 0.086 3.914 9 C -0.163 4.163 10 C -0.100 4.100 11 C -0.098 4.098 12 C 0.128 3.872 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.077 4.077 27 C 0.048 3.952 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.955 -2.474 27.485 35.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 H 0.086 0.914 4 C 0.305 3.695 5 N -0.423 5.423 6 O -0.394 6.394 7 N -0.238 5.238 8 C -0.041 4.041 9 C -0.182 4.182 10 C -0.101 4.101 11 C -0.135 4.135 12 C 0.004 3.996 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.114 4.114 27 C -0.080 4.080 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.904 -1.619 27.804 34.823 hybrid contribution -0.242 -1.183 -1.255 1.742 sum -21.147 -2.802 26.549 34.057 Atomic orbital electron populations 1.21890 0.91873 1.03764 1.02921 1.21562 0.97252 0.96195 0.90099 0.91442 1.20464 0.79731 0.84454 0.84838 1.43874 1.56408 1.33918 1.08058 1.90749 1.36711 1.25519 1.86412 1.62086 1.06791 1.54665 1.00298 1.20983 0.99201 0.96432 0.87487 1.21987 0.97103 1.01094 0.97970 1.20804 0.95812 0.98480 0.95015 1.20918 0.99354 0.98824 0.94449 1.21210 0.96801 0.96400 0.85213 1.46026 1.47805 1.22107 1.23529 1.20307 0.77869 0.85110 0.85023 1.90701 1.57085 1.20153 1.71368 1.23532 1.04629 1.05603 0.96626 1.85397 1.51695 1.22492 1.23907 1.22918 1.31599 1.06109 1.07682 0.90868 1.24994 0.95144 0.95160 0.98305 1.70031 1.28911 1.15271 1.36099 0.86114 0.78340 0.79556 0.81461 1.19614 1.20576 1.20575 1.20456 0.98561 1.00636 0.91729 1.22353 0.86889 0.97791 1.00931 0.91582 0.90881 0.90898 0.77186 0.76654 0.93682 0.89369 0.86814 0.90443 0.90668 0.91710 0.91635 0.76839 0.89213 0.89232 0.92256 0.90407 0.89755 0.88851 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.58 37.16 0.32 -0.24 16 2 C 0.06 0.37 2.47 -68.86 -0.17 0.20 16 3 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 4 C 0.52 3.89 7.04 -10.99 -0.08 3.81 16 5 N -0.86 -2.87 8.77 31.22 0.27 -2.60 16 6 O -0.52 -6.23 15.17 5.55 0.08 -6.14 16 7 N -0.51 -4.38 4.32 -229.58 -0.99 -5.37 16 8 C 0.09 0.64 4.84 -5.32 -0.03 0.61 16 9 C -0.16 -1.41 9.50 -35.96 -0.34 -1.76 16 10 C -0.10 -0.94 5.15 -100.92 -0.52 -1.46 16 11 C -0.10 -0.89 5.38 -27.88 -0.15 -1.04 16 12 C 0.13 1.56 5.66 -4.04 -0.02 1.54 16 13 N -0.74 -10.19 5.56 -60.29 -0.33 -10.53 16 14 C 0.53 10.20 7.85 -10.99 -0.09 10.11 16 15 O -0.52 -12.15 15.86 5.55 0.09 -12.06 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 19 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.08 -0.74 6.04 -28.03 -0.17 -0.91 16 27 C 0.05 0.45 5.18 -3.59 -0.02 0.44 16 28 H 0.07 0.10 7.56 -51.93 -0.39 -0.29 16 29 H 0.07 0.23 6.45 -51.93 -0.34 -0.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.40 0.14 8.25 -40.82 -0.34 -0.20 16 32 H 0.40 1.11 8.93 -40.82 -0.36 0.75 16 33 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.09 0.54 6.56 -51.93 -0.34 0.20 16 35 H 0.11 0.89 7.81 -52.48 -0.41 0.48 16 36 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 37 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.99 5.71 -51.93 -0.30 0.70 16 47 H 0.03 0.32 8.09 -51.93 -0.42 -0.10 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -38.20 396.34 -9.67 -47.87 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.42 Total: 0.59 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -0.84 Total: -4.72 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.32 Total: -44.15 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.20 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.20 -9.67 -47.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.822 kcal (2) G-P(sol) polarization free energy of solvation -38.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds