Wall clock time and date at job start Wed Apr 1 2020 00:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47210 * 2 1 4 4 C 1.50695 * 109.47318 * 120.00348 * 2 1 3 5 5 N 1.34779 * 119.99939 * 299.99959 * 4 2 1 6 6 O 1.21283 * 120.00111 * 119.99778 * 4 2 1 7 7 N 1.46906 * 109.47191 * 240.00438 * 2 1 3 8 8 C 1.46761 * 111.14302 * 51.89944 * 7 2 1 9 9 C 1.50142 * 110.41820 * 174.11286 * 8 7 2 10 10 C 1.29821 * 123.28645 * 343.08797 * 9 8 7 11 11 C 1.50709 * 118.55623 * 180.37145 * 10 9 8 12 12 C 1.52994 * 109.46779 * 95.02004 * 11 10 9 13 13 N 1.46504 * 109.46979 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00208 * 179.97438 * 13 12 11 15 15 O 1.21286 * 120.00307 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99923 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47068 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00085 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00060 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00117 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46999 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47647 * 119.99881 * 22 20 18 25 25 H 1.48502 * 109.46913 * 240.00115 * 22 20 18 26 26 C 1.50304 * 122.89323 * 0.39317 * 10 9 8 27 27 C 1.47239 * 111.00004 * 175.00027 * 7 2 1 28 28 H 1.08993 * 109.46958 * 299.99697 * 1 2 3 29 29 H 1.09003 * 109.47153 * 59.99565 * 1 2 3 30 30 H 1.08993 * 109.46934 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00161 * 359.97438 * 5 4 2 32 32 H 0.97000 * 120.00328 * 179.97438 * 5 4 2 33 33 H 1.08992 * 109.15568 * 53.89616 * 8 7 2 34 34 H 1.09005 * 109.24543 * 294.38832 * 8 7 2 35 35 H 1.08006 * 118.36072 * 163.06081 * 9 8 7 36 36 H 1.09000 * 109.46802 * 215.02348 * 11 10 9 37 37 H 1.09002 * 109.46837 * 335.02187 * 11 10 9 38 38 H 1.09000 * 109.47735 * 299.99773 * 12 11 10 39 39 H 1.09002 * 109.47286 * 60.00459 * 12 11 10 40 40 H 0.97004 * 119.99991 * 0.02562 * 13 12 11 41 41 H 1.08994 * 109.47372 * 299.99674 * 16 14 13 42 42 H 1.08999 * 109.47560 * 60.00062 * 16 14 13 43 43 H 0.97002 * 119.99975 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.43124 * 223.40516 * 26 10 9 45 45 H 1.09006 * 109.42944 * 103.55645 * 26 10 9 46 46 H 1.09002 * 109.63847 * 48.11079 * 27 7 2 47 47 H 1.08999 * 109.63658 * 287.70548 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7068 -0.2500 2.4545 6 8 2.7296 -1.6966 1.1190 7 7 2.0197 -0.6924 -1.1995 8 6 1.3998 -0.1498 -2.4141 9 6 2.0146 -0.7676 -3.6367 10 6 3.1486 -1.3994 -3.6223 11 6 3.6712 -1.9712 -4.9151 12 6 4.6395 -0.9764 -5.5581 13 7 5.1471 -1.5320 -6.8151 14 6 6.0207 -0.8260 -7.5598 15 8 6.3872 0.2692 -7.1891 16 6 6.5424 -1.3973 -8.8530 17 16 7.6881 -0.2206 -9.6138 18 6 8.1311 -1.1185 -11.0636 19 1 7.7075 -2.0954 -11.2443 20 6 9.0254 -0.5709 -11.9730 21 7 9.5421 0.6195 -11.7525 22 14 9.4945 -1.5225 -13.5104 23 1 8.7806 -2.8247 -13.5236 24 1 9.1161 -0.7379 -14.7131 25 1 10.9601 -1.7619 -13.5164 26 6 3.9631 -1.5861 -2.3730 27 6 3.4866 -0.6092 -1.2949 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1494 0.5388 2.5436 32 1 2.0298 -0.7075 3.2465 33 1 1.5500 0.9294 -2.4408 34 1 0.3314 -0.3653 -2.3993 35 1 1.4867 -0.6824 -4.5752 36 1 4.1921 -2.9073 -4.7139 37 1 2.8381 -2.1573 -5.5930 38 1 4.1186 -0.0404 -5.7592 39 1 5.4725 -0.7903 -4.8801 40 1 4.8538 -2.4078 -7.1117 41 1 7.0635 -2.3334 -8.6527 42 1 5.7090 -1.5832 -9.5305 43 1 10.1668 1.0024 -12.3882 44 1 5.0138 -1.3983 -2.5937 45 1 3.8460 -2.6084 -2.0132 46 1 3.9318 -0.8758 -0.3364 47 1 3.7791 0.4055 -1.5650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159332829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:34 Heat of formation + Delta-G solvation = -90.693722 kcal Electronic energy + Delta-G solvation = -26236.564592 eV Core-core repulsion = 22351.163424 eV Total energy + Delta-G solvation = -3885.401168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24890 -40.62411 -39.47329 -37.00847 -35.40887 -34.65567 -34.58024 -32.52383 -31.77889 -30.87819 -29.06072 -27.66443 -26.38603 -24.55138 -23.98837 -22.72526 -21.81279 -21.02470 -19.84669 -18.75028 -18.52231 -17.85309 -17.51387 -17.24516 -16.87912 -16.82129 -16.66756 -16.30112 -15.83669 -15.68498 -15.57768 -15.24186 -14.81478 -14.63277 -14.55893 -14.28517 -14.14355 -13.64436 -13.45210 -13.34759 -13.27625 -13.15877 -12.91237 -12.81058 -12.74013 -12.61014 -12.48763 -12.22346 -11.76966 -11.70839 -11.53714 -11.15720 -10.96780 -10.72964 -10.57559 -10.27268 -10.13072 -9.77333 -9.26489 -8.66924 -8.34693 -6.12905 1.20363 1.30956 1.41832 1.48474 1.59479 1.60908 1.65299 2.26712 2.33067 2.40350 2.96343 2.99618 3.32235 3.72140 3.82177 3.93926 3.96912 4.04835 4.11384 4.14507 4.20751 4.30718 4.33065 4.36205 4.44184 4.51395 4.56371 4.60458 4.69801 4.73630 4.86578 4.91653 4.93420 5.05469 5.11335 5.14793 5.28101 5.42145 5.42762 5.50897 5.91466 5.98439 5.99463 6.16376 6.20282 6.51393 6.52060 7.06729 7.24651 7.38988 8.74895 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038673 B = 0.001491 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.851847 B =18776.723312 C =18875.153251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 H 0.083 0.917 4 C 0.516 3.484 5 N -0.837 5.837 6 O -0.574 6.574 7 N -0.528 5.528 8 C 0.083 3.917 9 C -0.158 4.158 10 C -0.119 4.119 11 C -0.083 4.083 12 C 0.130 3.870 13 N -0.713 5.713 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.154 6.154 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.075 4.075 27 C 0.052 3.948 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.417 0.583 32 H 0.407 0.593 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.418 0.582 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.268 -3.644 27.421 36.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 H 0.100 0.900 4 C 0.301 3.699 5 N -0.402 5.402 6 O -0.453 6.453 7 N -0.254 5.254 8 C -0.043 4.043 9 C -0.177 4.177 10 C -0.120 4.120 11 C -0.121 4.121 12 C 0.006 3.994 13 N -0.367 5.367 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.073 5.927 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.113 4.113 27 C -0.076 4.076 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.248 0.752 32 H 0.239 0.761 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.255 0.745 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.293 -2.801 27.793 36.371 hybrid contribution 0.353 -0.801 -1.059 1.374 sum -22.940 -3.602 26.734 35.411 Atomic orbital electron populations 1.21905 0.89820 1.03393 1.04807 1.21694 0.98741 0.96289 0.88547 0.89963 1.20814 0.79067 0.83881 0.86187 1.43714 1.55446 1.33983 1.07069 1.90728 1.39294 1.28002 1.87245 1.62065 1.05955 1.55795 1.01563 1.21091 0.99936 0.96701 0.86605 1.22294 0.96667 0.99667 0.99036 1.20795 0.96429 0.99968 0.94768 1.20803 0.98986 0.97959 0.94307 1.21291 0.96912 0.97114 0.84035 1.45770 1.45589 1.22245 1.23076 1.20106 0.78472 0.84692 0.84956 1.90690 1.59221 1.22375 1.72422 1.23375 1.03539 1.03901 0.97219 1.85590 1.54782 1.26826 1.25476 1.23249 1.31927 1.06415 1.07798 0.89851 1.26137 0.94826 0.96131 1.02058 1.70193 1.29718 1.17277 1.37639 0.84889 0.78132 0.78367 0.76444 1.18000 1.19884 1.19964 1.20397 0.98531 1.00058 0.92277 1.22216 0.88018 0.97406 0.99952 0.88914 0.89861 0.92306 0.75151 0.76138 0.92860 0.87584 0.85587 0.89595 0.88978 0.92658 0.92983 0.74516 0.87160 0.87032 0.91993 0.90907 0.90919 0.90446 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.58 71.98 0.62 -0.11 16 2 C 0.06 0.64 2.47 44.17 0.11 0.75 16 3 H 0.08 0.66 8.13 -2.39 -0.02 0.64 16 4 C 0.52 7.43 7.04 87.65 0.62 8.05 16 5 N -0.84 -4.46 8.77 -173.53 -1.52 -5.98 16 6 O -0.57 -14.23 15.17 -3.04 -0.05 -14.27 16 7 N -0.53 -8.61 4.32 -880.27 -3.81 -12.42 16 8 C 0.08 1.08 4.84 85.41 0.41 1.50 16 9 C -0.16 -2.46 9.50 26.69 0.25 -2.21 16 10 C -0.12 -2.10 5.15 -15.39 -0.08 -2.18 16 11 C -0.08 -1.35 5.38 29.85 0.16 -1.19 16 12 C 0.13 3.05 5.66 86.38 0.49 3.54 16 13 N -0.71 -18.37 5.56 -463.06 -2.57 -20.95 16 14 C 0.53 20.12 7.85 87.66 0.69 20.81 16 15 O -0.57 -27.19 15.86 -3.05 -0.05 -27.24 16 16 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 17 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 18 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 22 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.08 -1.48 6.04 29.75 0.18 -1.30 16 27 C 0.05 1.01 5.18 86.27 0.45 1.45 16 28 H 0.09 -0.03 7.56 -2.39 -0.02 -0.05 16 29 H 0.08 0.28 6.45 -2.39 -0.02 0.27 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.42 -0.69 8.25 -92.71 -0.76 -1.46 16 32 H 0.41 1.83 8.93 -92.71 -0.83 1.00 16 33 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.11 1.01 6.56 -2.38 -0.02 0.99 16 35 H 0.13 1.63 7.81 -2.91 -0.02 1.61 16 36 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 37 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.42 7.61 8.47 -92.71 -0.79 6.82 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.96 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 46 H 0.08 1.76 5.71 -2.39 -0.01 1.74 16 47 H 0.03 0.60 8.09 -2.39 -0.02 0.58 16 Total: -1.00 -86.56 396.34 -2.77 -89.32 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -1.37 Total: 16.87 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.45 Total: -5.24 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -7.61 Total: -95.51 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.09 Total: -41.51 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -86.56 -2.77 -89.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.372 kcal (2) G-P(sol) polarization free energy of solvation -86.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds