Wall clock time and date at job start Wed Apr 1 2020 00:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47572 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47192 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99664 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46836 * 180.02562 * 9 8 7 11 11 C 1.41381 * 126.80130 * 94.70853 * 10 9 8 12 12 C 1.35450 * 103.98107 * 179.88789 * 11 10 9 13 13 O 1.34041 * 106.45029 * 0.37225 * 12 11 10 14 14 N 1.20919 * 111.56252 * 359.74374 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 1.08998 * 109.46564 * 300.00415 * 7 6 5 38 38 H 1.09002 * 109.46836 * 59.99804 * 7 6 5 39 39 H 1.00900 * 110.99902 * 56.05058 * 8 7 6 40 40 H 1.08997 * 109.47008 * 300.00187 * 9 8 7 41 41 H 1.08999 * 109.47232 * 60.00407 * 9 8 7 42 42 H 1.07993 * 128.00881 * 0.02562 * 11 10 9 43 43 H 1.08007 * 126.77358 * 180.10014 * 12 11 10 44 44 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 45 45 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 46 46 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 47 47 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 6 5.5997 -1.2272 -2.6271 8 7 6.0895 -1.9206 -3.8260 9 6 7.5530 -1.8375 -3.9212 10 6 8.0174 -2.5577 -5.1609 11 6 8.2737 -1.9844 -6.4276 12 6 8.6631 -3.0346 -7.1893 13 8 8.6161 -4.1155 -6.3981 14 7 8.2566 -3.8318 -5.2790 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.4563 -1.8141 8.4830 26 1 4.2562 -0.5140 10.1409 27 1 3.1758 -2.3994 9.0638 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 5.8884 -0.1770 -2.6708 38 1 6.0340 -1.6867 -1.7392 39 1 5.6520 -1.5557 -4.6588 40 1 7.8548 -0.7915 -3.9746 41 1 8.0012 -2.3005 -3.0422 42 1 8.1826 -0.9487 -6.7195 43 1 8.9501 -3.0071 -8.2302 44 1 2.2492 -1.6319 1.1524 45 1 1.9698 -1.5528 3.8298 46 1 3.6437 -1.1227 3.4038 47 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169257743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:39 Heat of formation + Delta-G solvation = 3.137188 kcal Electronic energy + Delta-G solvation = -25456.237824 eV Core-core repulsion = 21574.905469 eV Total energy + Delta-G solvation = -3881.332354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.37468 -39.42401 -37.70860 -36.43503 -34.73095 -33.14487 -32.41462 -32.09035 -31.32248 -28.88022 -28.37655 -26.09986 -25.46535 -23.61069 -23.21853 -21.79013 -21.24558 -21.11090 -20.25480 -18.24409 -17.97024 -17.81093 -16.74744 -16.44861 -15.97262 -15.64064 -15.27903 -14.87564 -14.83660 -14.78772 -14.45071 -14.07776 -13.79754 -13.71922 -13.40308 -13.18530 -12.99087 -12.68265 -12.56579 -12.34390 -12.22934 -11.89862 -11.77521 -11.58312 -11.48008 -11.09499 -11.03047 -11.02150 -10.87602 -10.77438 -10.74621 -10.57332 -10.10837 -9.80558 -9.33102 -9.04914 -8.96080 -8.83168 -8.22117 -6.48251 -6.20237 -3.90629 1.06291 1.72032 2.81831 3.07651 3.14789 3.24520 3.28677 3.33465 3.57180 3.77029 3.79766 4.13246 4.22113 4.47307 4.63887 4.65428 4.70528 4.76906 4.84716 5.00477 5.04390 5.11103 5.14816 5.16365 5.22687 5.24917 5.30864 5.47973 5.49012 5.51583 5.57855 5.60224 5.64319 5.74741 5.76140 5.91863 5.96801 6.09217 6.14240 6.16782 6.25768 6.44659 6.75081 6.83463 7.60622 7.78382 7.84568 8.36378 8.67693 9.24982 10.87108 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.001618 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.393975 B =17299.419712 C =19245.620705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.086 0.914 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.115 4.115 7 C 0.058 3.942 8 N -0.684 5.684 9 C 0.136 3.864 10 C 0.016 3.984 11 C -0.233 4.233 12 C -0.060 4.060 13 O 0.102 5.898 14 N -0.345 5.345 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.342 0.658 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.170 0.830 43 H 0.217 0.783 44 H 0.396 0.604 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 -6.638 -32.272 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.071 4.071 8 N -0.316 5.316 9 C 0.006 3.994 10 C -0.144 4.144 11 C -0.255 4.255 12 C -0.141 4.141 13 O 0.033 5.967 14 N -0.047 5.047 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.159 0.841 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.188 0.812 43 H 0.233 0.767 44 H 0.230 0.770 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.618 -6.168 -30.876 31.984 hybrid contribution 0.968 -0.759 -0.002 1.230 sum 6.586 -6.927 -30.878 32.324 Atomic orbital electron populations 1.22186 0.95602 1.01928 1.02523 1.20901 0.93791 0.97658 0.83950 0.89556 1.21872 0.95721 1.01144 0.97400 1.21560 0.95340 1.00983 0.97905 1.21555 0.93889 1.01652 0.98207 1.22041 0.95958 0.96126 0.92993 1.60429 1.04102 1.61026 1.06078 1.20172 0.88946 0.97227 0.93035 1.23519 1.03178 0.90244 0.97449 1.22781 1.07727 1.01970 0.93018 1.26049 1.02879 0.85635 0.99587 1.84887 1.62417 1.34074 1.15285 1.73901 1.14782 1.17011 0.99047 1.46109 1.69221 1.13821 1.09583 1.20286 0.76819 0.87234 0.83815 1.90692 1.48352 1.15825 1.84464 1.23539 1.03648 1.04813 0.98468 1.85371 1.86539 1.12930 0.98528 1.22838 1.51185 0.98151 0.96285 0.91005 1.24983 0.95081 0.95529 0.97934 1.70010 1.45554 1.13240 1.21518 0.86233 0.79314 0.80041 0.79971 1.19953 1.20810 1.19939 0.91741 0.92056 0.92668 0.91375 0.90649 0.91778 0.91332 0.91002 0.92167 0.94804 0.90484 0.84059 0.92647 0.89014 0.81209 0.76695 0.76978 0.89320 0.89346 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 2 C 0.14 1.61 2.57 -67.93 -0.17 1.43 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -0.98 4.75 -26.73 -0.13 -1.11 16 5 C -0.12 -0.97 5.10 -26.74 -0.14 -1.10 16 6 C -0.12 -0.80 5.47 -26.73 -0.15 -0.95 16 7 C 0.06 0.42 5.69 -3.82 -0.02 0.40 16 8 N -0.68 -5.16 6.49 -115.05 -0.75 -5.91 16 9 C 0.14 0.99 6.27 -4.97 -0.03 0.96 16 10 C 0.02 0.13 6.84 -82.10 -0.56 -0.43 16 11 C -0.23 -1.23 11.12 -39.38 -0.44 -1.67 16 12 C -0.06 -0.26 12.30 29.74 0.37 0.10 16 13 O 0.10 0.81 11.20 17.17 0.19 1.00 16 14 N -0.35 -3.49 12.07 33.42 0.40 -3.09 16 15 N -0.73 -9.58 4.53 -53.80 -0.24 -9.83 16 16 C 0.53 9.85 7.81 -10.98 -0.09 9.77 16 17 O -0.52 -11.70 15.53 5.55 0.09 -11.61 16 18 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 24 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.62 7.75 -51.92 -0.40 0.22 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.34 2.19 8.72 -39.29 -0.34 1.85 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.22 -0.03 8.06 -52.48 -0.42 -0.45 16 44 H 0.40 4.14 8.60 -40.82 -0.35 3.78 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -36.19 411.92 -8.99 -45.17 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.80 Total: 0.97 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.59 Total: -10.02 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.15 Total: -44.38 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.28 Total: -10.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.19 -8.99 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169257743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.310 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds