Wall clock time and date at job start Wed Apr 1 2020 00:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47572 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47192 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99664 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46836 * 180.02562 * 9 8 7 11 11 C 1.41381 * 126.80130 * 94.70853 * 10 9 8 12 12 C 1.35450 * 103.98107 * 179.88789 * 11 10 9 13 13 O 1.34041 * 106.45029 * 0.37225 * 12 11 10 14 14 N 1.20919 * 111.56252 * 359.74374 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 1.08998 * 109.46564 * 300.00415 * 7 6 5 38 38 H 1.09002 * 109.46836 * 59.99804 * 7 6 5 39 39 H 1.00900 * 110.99902 * 56.05058 * 8 7 6 40 40 H 1.08997 * 109.47008 * 300.00187 * 9 8 7 41 41 H 1.08999 * 109.47232 * 60.00407 * 9 8 7 42 42 H 1.07993 * 128.00881 * 0.02562 * 11 10 9 43 43 H 1.08007 * 126.77358 * 180.10014 * 12 11 10 44 44 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 45 45 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 46 46 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 47 47 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 6 5.5997 -1.2272 -2.6271 8 7 6.0895 -1.9206 -3.8260 9 6 7.5530 -1.8375 -3.9212 10 6 8.0174 -2.5577 -5.1609 11 6 8.2737 -1.9844 -6.4276 12 6 8.6631 -3.0346 -7.1893 13 8 8.6161 -4.1155 -6.3981 14 7 8.2566 -3.8318 -5.2790 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.4563 -1.8141 8.4830 26 1 4.2562 -0.5140 10.1409 27 1 3.1758 -2.3994 9.0638 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 5.8884 -0.1770 -2.6708 38 1 6.0340 -1.6867 -1.7392 39 1 5.6520 -1.5557 -4.6588 40 1 7.8548 -0.7915 -3.9746 41 1 8.0012 -2.3005 -3.0422 42 1 8.1826 -0.9487 -6.7195 43 1 8.9501 -3.0071 -8.2302 44 1 2.2492 -1.6319 1.1524 45 1 1.9698 -1.5528 3.8298 46 1 3.6437 -1.1227 3.4038 47 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169257743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:38 Heat of formation + Delta-G solvation = -22.780069 kcal Electronic energy + Delta-G solvation = -25457.361680 eV Core-core repulsion = 21574.905469 eV Total energy + Delta-G solvation = -3882.456211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.89054 -40.77084 -38.38340 -37.38060 -35.41151 -34.58959 -33.92861 -32.66243 -32.36813 -30.07842 -29.31835 -27.65905 -26.72546 -24.16923 -23.87252 -22.40356 -22.18972 -21.68003 -21.50512 -19.82701 -18.70237 -18.52158 -17.91552 -17.41873 -17.04124 -16.88129 -16.40355 -16.29883 -15.90434 -15.77749 -15.35883 -15.01539 -14.73388 -14.70025 -14.44006 -14.22855 -14.20678 -13.67298 -13.53261 -13.18957 -13.15958 -13.07923 -13.00470 -12.87365 -12.62087 -12.33823 -12.31661 -12.09832 -11.84593 -11.74939 -11.59835 -11.42749 -11.13566 -11.12757 -10.87304 -10.55913 -10.28180 -10.05450 -9.51283 -8.66755 -8.34940 -6.13002 0.64795 1.25824 1.27182 1.43103 1.46600 1.56874 1.65713 2.26636 2.35698 2.49180 2.98958 3.06449 3.29285 3.32749 3.66768 3.79113 3.97523 4.03021 4.06825 4.21047 4.25496 4.31031 4.32212 4.39113 4.43119 4.50254 4.52112 4.56235 4.69685 4.72841 4.78641 4.83828 4.88281 4.95198 4.96462 5.08841 5.15504 5.19328 5.33483 5.37966 5.40930 5.48754 5.63353 5.88305 6.19046 6.33883 6.56936 7.06156 7.30618 7.38784 8.74007 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.001618 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.393975 B =17299.419712 C =19245.620705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.104 4.104 7 C 0.060 3.940 8 N -0.692 5.692 9 C 0.137 3.863 10 C 0.001 3.999 11 C -0.239 4.239 12 C -0.046 4.046 13 O 0.086 5.914 14 N -0.391 5.391 15 N -0.707 5.707 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.262 1.262 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.349 0.651 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.196 0.804 43 H 0.261 0.739 44 H 0.413 0.587 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -8.390 -34.579 36.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.069 4.069 8 N -0.325 5.325 9 C 0.007 3.993 10 C -0.158 4.158 11 C -0.261 4.261 12 C -0.127 4.127 13 O 0.020 5.980 14 N -0.096 5.096 15 N -0.361 5.361 16 C 0.320 3.680 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.697 4.697 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.187 1.187 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.168 0.832 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.213 0.787 43 H 0.277 0.723 44 H 0.250 0.750 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.919 -7.969 -33.244 34.695 hybrid contribution 0.868 -0.212 0.529 1.038 sum 6.787 -8.181 -32.715 34.399 Atomic orbital electron populations 1.22150 0.94953 1.02776 1.01953 1.21097 0.94264 0.96874 0.84304 0.91922 1.21812 0.95349 1.01753 0.95962 1.21520 0.95531 1.00498 0.98041 1.21441 0.93456 1.01305 0.98032 1.21989 0.96252 0.96141 0.92513 1.60384 1.04334 1.61354 1.06429 1.20152 0.88807 0.97912 0.92394 1.23831 1.03125 0.90164 0.98692 1.23127 1.07745 1.03430 0.91816 1.26920 1.00750 0.84239 1.00779 1.84825 1.62581 1.35438 1.15197 1.73897 1.16970 1.18364 1.00415 1.45902 1.67261 1.14445 1.08480 1.20014 0.76713 0.86589 0.84695 1.90681 1.50783 1.17789 1.85229 1.23389 1.05404 1.03169 0.96242 1.85539 1.86935 1.17310 1.02517 1.23184 1.51215 0.98481 0.96800 0.90021 1.26114 0.95003 0.97204 1.00708 1.70178 1.46797 1.15489 1.22244 0.85019 0.79073 0.77771 0.76233 1.18722 1.20297 1.18672 0.95255 0.89734 0.91043 0.89705 0.88571 0.92633 0.92550 0.91303 0.90835 0.94428 0.91839 0.83238 0.90990 0.90657 0.78705 0.72338 0.74974 0.87483 0.87469 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.48 71.98 0.68 -2.58 16 2 C 0.14 2.94 2.57 44.99 0.12 3.06 16 3 H 0.06 1.68 7.58 -2.38 -0.02 1.66 16 4 C -0.11 -1.44 4.75 30.59 0.15 -1.30 16 5 C -0.12 -1.69 5.10 30.59 0.16 -1.53 16 6 C -0.10 -1.24 5.47 30.60 0.17 -1.07 16 7 C 0.06 0.81 5.69 86.30 0.49 1.30 16 8 N -0.69 -9.82 6.49 -517.92 -3.36 -13.18 16 9 C 0.14 1.95 6.27 85.56 0.54 2.49 16 10 C 0.00 0.01 6.84 43.58 0.30 0.31 16 11 C -0.24 -2.07 11.12 22.40 0.25 -1.82 16 12 C -0.05 -0.30 12.30 67.18 0.83 0.52 16 13 O 0.09 1.32 11.20 71.62 0.80 2.12 16 14 N -0.39 -7.98 12.07 -49.56 -0.60 -8.58 16 15 N -0.71 -17.56 4.53 -442.52 -2.00 -19.57 16 16 C 0.53 19.79 7.81 87.66 0.68 20.48 16 17 O -0.57 -26.40 15.53 -3.04 -0.05 -26.45 16 18 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 19 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 20 C -0.55 -31.75 9.50 67.95 0.65 -31.10 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 24 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.95 7.75 -2.38 -0.02 0.93 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.35 3.96 8.72 -89.69 -0.78 3.18 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.26 -1.05 8.06 -2.91 -0.02 -1.07 16 44 H 0.41 7.61 8.60 -92.71 -0.80 6.81 16 45 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 46 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 47 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -83.16 411.92 1.24 -81.92 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.61 Total: 18.18 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.90 Total: -14.75 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -5.68 Total: -97.45 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.75 Total: -24.33 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -83.16 1.24 -81.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169257743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.138 kcal (2) G-P(sol) polarization free energy of solvation -83.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds