Wall clock time and date at job start Wed Apr 1 2020 00:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47594 * 2 1 4 4 C 1.53003 * 109.47299 * 119.99812 * 2 1 3 5 5 C 1.52997 * 109.47579 * 184.99762 * 4 2 1 6 6 C 1.52995 * 109.47566 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47566 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.47519 * 180.02562 * 7 6 5 9 9 C 1.46893 * 111.00327 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47516 * 179.97438 * 9 8 7 11 11 C 1.41379 * 126.80093 * 94.70494 * 10 9 8 12 12 C 1.35446 * 103.98652 * 180.26598 * 11 10 9 13 13 O 1.34044 * 106.44743 * 0.02562 * 12 11 10 14 14 N 1.20918 * 111.56370 * 359.97438 * 13 12 11 15 15 N 1.46502 * 109.46999 * 239.99430 * 2 1 3 16 16 C 1.34775 * 119.99999 * 85.00483 * 15 2 1 17 17 O 1.21288 * 120.00014 * 359.97438 * 16 15 2 18 18 C 1.50701 * 120.00192 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46940 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99766 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00155 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00101 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99904 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47255 * 90.00058 * 24 22 20 26 26 H 1.48503 * 109.47029 * 210.00288 * 24 22 20 27 27 H 1.48498 * 109.46954 * 330.00033 * 24 22 20 28 28 H 1.08994 * 109.47636 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47207 * 300.00846 * 1 2 3 30 30 H 1.09002 * 109.46992 * 60.00146 * 1 2 3 31 31 H 1.09003 * 109.47048 * 64.99239 * 4 2 1 32 32 H 1.09005 * 109.46639 * 304.99898 * 4 2 1 33 33 H 1.09003 * 109.47358 * 59.99666 * 5 4 2 34 34 H 1.09003 * 109.47118 * 300.00290 * 5 4 2 35 35 H 1.09003 * 109.46865 * 59.99597 * 6 5 4 36 36 H 1.09003 * 109.47328 * 300.00394 * 6 5 4 37 37 H 1.08998 * 109.46930 * 60.00026 * 7 6 5 38 38 H 1.09003 * 109.47118 * 300.00523 * 7 6 5 39 39 H 1.00902 * 110.99822 * 303.95489 * 8 7 6 40 40 H 1.08995 * 109.47476 * 59.99668 * 9 8 7 41 41 H 1.09006 * 109.46874 * 299.99916 * 9 8 7 42 42 H 1.08001 * 128.00721 * 0.25149 * 11 10 9 43 43 H 1.08004 * 126.77907 * 179.97438 * 12 11 10 44 44 H 0.96997 * 119.99968 * 265.00101 * 15 2 1 45 45 H 1.08996 * 109.46938 * 299.99536 * 18 16 15 46 46 H 1.09002 * 109.47087 * 59.99910 * 18 16 15 47 47 H 0.97003 * 120.00200 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 6 5.5996 -1.2266 2.6274 8 7 6.0893 -1.9191 3.8268 9 6 7.5528 -1.8361 3.9220 10 6 8.0172 -2.5554 5.1622 11 6 8.4588 -3.8956 5.2487 12 6 8.7540 -4.0591 6.5604 13 8 8.4921 -2.8878 7.1572 14 7 8.0853 -2.0676 6.3672 15 7 2.0182 -0.6907 -1.1961 16 6 2.1470 -0.0185 -2.3571 17 8 1.8582 1.1582 -2.4118 18 6 2.6488 -0.7291 -3.5877 19 16 2.7092 0.4337 -4.9734 20 6 3.3124 -0.6315 -6.2407 21 1 3.5217 -1.6680 -6.0206 22 6 3.5177 -0.1390 -7.5220 23 7 3.2622 1.1240 -7.7903 24 14 4.1566 -1.2686 -8.8656 25 1 3.0108 -1.9063 -9.5625 26 1 4.9512 -0.4785 -9.8402 27 1 5.0157 -2.3188 -8.2623 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7515 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8533 0.4369 1.3573 34 1 3.9994 -1.0729 0.4260 35 1 3.7863 -2.3843 2.5202 36 1 3.6401 -0.8741 3.4508 37 1 5.8884 -0.1765 2.6704 38 1 6.0339 -1.6868 1.7399 39 1 5.6518 -1.5535 4.6593 40 1 7.8548 -0.7901 3.9746 41 1 8.0009 -2.2999 3.0433 42 1 8.5414 -4.6212 4.4530 43 1 9.1261 -4.9564 7.0326 44 1 2.2489 -1.6319 -1.1525 45 1 3.6479 -1.1217 -3.3985 46 1 1.9758 -1.5509 -3.8325 47 1 3.4053 1.4682 -8.6859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169257744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:41 Heat of formation + Delta-G solvation = 2.401601 kcal Electronic energy + Delta-G solvation = -25459.413341 eV Core-core repulsion = 21578.049089 eV Total energy + Delta-G solvation = -3881.364252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.37010 -39.42756 -37.70241 -36.43349 -34.72888 -33.15185 -32.42533 -32.08272 -31.32190 -28.88185 -28.38095 -26.10065 -25.47570 -23.58105 -23.28162 -21.69110 -21.25284 -21.09399 -20.26089 -18.28984 -17.97963 -17.81947 -16.66118 -16.38410 -15.96691 -15.72930 -15.27563 -15.18229 -14.84573 -14.79912 -14.16520 -14.06985 -13.75662 -13.64275 -13.39871 -13.14668 -12.96293 -12.80122 -12.60628 -12.32682 -12.24136 -11.90183 -11.81764 -11.58475 -11.49465 -11.10035 -11.06162 -11.01465 -10.86501 -10.78040 -10.74732 -10.55836 -10.10711 -9.80601 -9.33541 -9.06616 -8.97005 -8.83630 -8.22385 -6.49075 -6.21300 -3.91573 1.05692 1.74276 2.82446 3.06992 3.14274 3.22293 3.28294 3.33150 3.54790 3.76360 3.88020 4.07913 4.20944 4.47138 4.64451 4.69695 4.72038 4.82757 4.86244 5.00465 5.05042 5.11202 5.12699 5.13951 5.23033 5.30112 5.31042 5.47709 5.49409 5.55628 5.56956 5.60293 5.63982 5.74562 5.76002 5.90947 5.96425 6.09041 6.14132 6.15691 6.25649 6.44030 6.74619 6.81053 7.59870 7.77925 7.80528 8.35542 8.67299 9.24032 10.86114 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.001619 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.904346 B =17292.986830 C =19260.765327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.086 0.914 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.115 4.115 7 C 0.057 3.943 8 N -0.685 5.685 9 C 0.136 3.864 10 C 0.019 3.981 11 C -0.218 4.218 12 C -0.062 4.062 13 O 0.099 5.901 14 N -0.363 5.363 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.343 0.657 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.173 0.827 43 H 0.217 0.783 44 H 0.396 0.604 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -11.714 29.098 32.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.072 4.072 8 N -0.317 5.317 9 C 0.006 3.994 10 C -0.140 4.140 11 C -0.239 4.239 12 C -0.144 4.144 13 O 0.032 5.968 14 N -0.067 5.067 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.190 0.810 43 H 0.234 0.766 44 H 0.230 0.770 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.822 -8.997 29.101 31.012 hybrid contribution 1.126 -2.487 -1.076 2.934 sum 6.948 -11.484 28.026 31.074 Atomic orbital electron populations 1.22183 0.95599 1.01918 1.02537 1.20900 0.93794 0.97675 0.83937 0.89548 1.21872 0.95725 1.01120 0.97415 1.21560 0.95337 1.01035 0.97854 1.21553 0.93892 1.01612 0.98247 1.22044 0.95965 0.96269 0.92923 1.60499 1.04055 1.60886 1.06248 1.20193 0.89063 0.97874 0.92235 1.23546 1.02338 0.93805 0.94309 1.22757 1.06079 0.97167 0.97938 1.26057 1.02998 0.91863 0.93453 1.84839 1.60432 1.17289 1.34221 1.73853 1.16119 1.15249 1.01503 1.46105 1.69240 1.13806 1.09570 1.20289 0.76855 0.87233 0.83809 1.90696 1.48379 1.15805 1.84425 1.23535 1.03595 1.04819 0.98484 1.85391 1.86306 1.12939 0.98773 1.22877 1.50940 0.98172 0.96409 0.90959 1.24988 0.95117 0.95517 0.97942 1.70017 1.45606 1.13212 1.21450 0.86177 0.78835 0.79970 0.80570 1.20273 1.20756 1.19709 0.92673 0.92049 0.91743 0.91380 0.90642 0.91779 0.91322 0.91001 0.92165 0.94811 0.90427 0.83890 0.93206 0.88474 0.80981 0.76639 0.77002 0.89350 0.89334 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.15 0.35 -1.45 16 2 C 0.14 1.60 2.57 -67.93 -0.17 1.43 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -0.98 4.75 -26.73 -0.13 -1.10 16 5 C -0.12 -0.97 5.10 -26.74 -0.14 -1.10 16 6 C -0.12 -0.80 5.47 -26.74 -0.15 -0.95 16 7 C 0.06 0.41 5.68 -3.83 -0.02 0.39 16 8 N -0.68 -5.18 6.49 -115.07 -0.75 -5.93 16 9 C 0.14 0.99 6.27 -4.98 -0.03 0.96 16 10 C 0.02 0.16 6.84 -82.10 -0.56 -0.41 16 11 C -0.22 -1.29 11.12 -39.38 -0.44 -1.73 16 12 C -0.06 -0.29 12.30 29.74 0.37 0.08 16 13 O 0.10 0.77 11.20 17.17 0.19 0.96 16 14 N -0.36 -3.45 12.07 33.42 0.40 -3.05 16 15 N -0.73 -9.48 4.53 -53.81 -0.24 -9.72 16 16 C 0.53 9.79 7.81 -10.99 -0.09 9.70 16 17 O -0.52 -11.68 15.53 5.55 0.09 -11.59 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.61 7.75 -51.93 -0.40 0.21 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.34 2.64 8.72 -39.29 -0.34 2.29 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.22 0.04 8.06 -52.48 -0.42 -0.38 16 44 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 45 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 46 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -35.60 411.92 -8.99 -44.59 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.80 Total: 1.50 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.59 Total: -10.02 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.15 Total: -44.16 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.28 Total: -10.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.60 -8.99 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169257744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.991 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds