Wall clock time and date at job start Wed Apr 1 2020 00:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47594 * 2 1 4 4 C 1.53003 * 109.47299 * 119.99812 * 2 1 3 5 5 C 1.52997 * 109.47579 * 184.99762 * 4 2 1 6 6 C 1.52995 * 109.47566 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47566 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.47519 * 180.02562 * 7 6 5 9 9 C 1.46893 * 111.00327 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47516 * 179.97438 * 9 8 7 11 11 C 1.41379 * 126.80093 * 94.70494 * 10 9 8 12 12 C 1.35446 * 103.98652 * 180.26598 * 11 10 9 13 13 O 1.34044 * 106.44743 * 0.02562 * 12 11 10 14 14 N 1.20918 * 111.56370 * 359.97438 * 13 12 11 15 15 N 1.46502 * 109.46999 * 239.99430 * 2 1 3 16 16 C 1.34775 * 119.99999 * 85.00483 * 15 2 1 17 17 O 1.21288 * 120.00014 * 359.97438 * 16 15 2 18 18 C 1.50701 * 120.00192 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46940 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99766 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00155 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00101 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99904 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47255 * 90.00058 * 24 22 20 26 26 H 1.48503 * 109.47029 * 210.00288 * 24 22 20 27 27 H 1.48498 * 109.46954 * 330.00033 * 24 22 20 28 28 H 1.08994 * 109.47636 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47207 * 300.00846 * 1 2 3 30 30 H 1.09002 * 109.46992 * 60.00146 * 1 2 3 31 31 H 1.09003 * 109.47048 * 64.99239 * 4 2 1 32 32 H 1.09005 * 109.46639 * 304.99898 * 4 2 1 33 33 H 1.09003 * 109.47358 * 59.99666 * 5 4 2 34 34 H 1.09003 * 109.47118 * 300.00290 * 5 4 2 35 35 H 1.09003 * 109.46865 * 59.99597 * 6 5 4 36 36 H 1.09003 * 109.47328 * 300.00394 * 6 5 4 37 37 H 1.08998 * 109.46930 * 60.00026 * 7 6 5 38 38 H 1.09003 * 109.47118 * 300.00523 * 7 6 5 39 39 H 1.00902 * 110.99822 * 303.95489 * 8 7 6 40 40 H 1.08995 * 109.47476 * 59.99668 * 9 8 7 41 41 H 1.09006 * 109.46874 * 299.99916 * 9 8 7 42 42 H 1.08001 * 128.00721 * 0.25149 * 11 10 9 43 43 H 1.08004 * 126.77907 * 179.97438 * 12 11 10 44 44 H 0.96997 * 119.99968 * 265.00101 * 15 2 1 45 45 H 1.08996 * 109.46938 * 299.99536 * 18 16 15 46 46 H 1.09002 * 109.47087 * 59.99910 * 18 16 15 47 47 H 0.97003 * 120.00200 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3340 2.5633 7 6 5.5996 -1.2266 2.6274 8 7 6.0893 -1.9191 3.8268 9 6 7.5528 -1.8361 3.9220 10 6 8.0172 -2.5554 5.1622 11 6 8.4588 -3.8956 5.2487 12 6 8.7540 -4.0591 6.5604 13 8 8.4921 -2.8878 7.1572 14 7 8.0853 -2.0676 6.3672 15 7 2.0182 -0.6907 -1.1961 16 6 2.1470 -0.0185 -2.3571 17 8 1.8582 1.1582 -2.4118 18 6 2.6488 -0.7291 -3.5877 19 16 2.7092 0.4337 -4.9734 20 6 3.3124 -0.6315 -6.2407 21 1 3.5217 -1.6680 -6.0206 22 6 3.5177 -0.1390 -7.5220 23 7 3.2622 1.1240 -7.7903 24 14 4.1566 -1.2686 -8.8656 25 1 3.0108 -1.9063 -9.5625 26 1 4.9512 -0.4785 -9.8402 27 1 5.0157 -2.3188 -8.2623 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7515 -1.7715 1.2057 32 1 1.6053 -0.2616 2.1370 33 1 3.8533 0.4369 1.3573 34 1 3.9994 -1.0729 0.4260 35 1 3.7863 -2.3843 2.5202 36 1 3.6401 -0.8741 3.4508 37 1 5.8884 -0.1765 2.6704 38 1 6.0339 -1.6868 1.7399 39 1 5.6518 -1.5535 4.6593 40 1 7.8548 -0.7901 3.9746 41 1 8.0009 -2.2999 3.0433 42 1 8.5414 -4.6212 4.4530 43 1 9.1261 -4.9564 7.0326 44 1 2.2489 -1.6319 -1.1525 45 1 3.6479 -1.1217 -3.3985 46 1 1.9758 -1.5509 -3.8325 47 1 3.4053 1.4682 -8.6859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169257744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:40 Heat of formation + Delta-G solvation = -22.843435 kcal Electronic energy + Delta-G solvation = -25460.508048 eV Core-core repulsion = 21578.049089 eV Total energy + Delta-G solvation = -3882.458959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.89062 -40.76605 -38.38388 -37.37970 -35.41595 -34.58448 -33.93721 -32.67796 -32.35373 -30.07139 -29.32114 -27.65450 -26.72914 -24.09914 -23.99325 -22.34975 -22.15840 -21.65704 -21.50731 -19.82262 -18.76745 -18.53010 -17.90977 -17.37242 -16.95890 -16.87561 -16.39391 -16.28459 -16.02807 -15.80817 -15.63160 -14.86095 -14.72761 -14.59172 -14.41359 -14.21613 -14.12932 -13.58996 -13.54282 -13.29971 -13.16336 -13.08439 -12.99911 -12.89077 -12.59828 -12.37570 -12.30571 -12.14097 -11.85059 -11.72866 -11.59198 -11.43515 -11.14272 -11.13305 -10.86751 -10.56053 -10.26633 -10.05114 -9.56446 -8.66183 -8.34450 -6.12423 0.61756 1.26359 1.28000 1.42412 1.47874 1.58314 1.66563 2.27062 2.36121 2.47345 2.99675 3.01999 3.32932 3.34164 3.61746 3.75655 3.97928 4.02655 4.07139 4.22816 4.25831 4.30419 4.34510 4.38731 4.44970 4.51075 4.52544 4.57106 4.64378 4.72605 4.78280 4.87154 4.88743 4.95490 4.96505 5.08182 5.16270 5.19078 5.33222 5.37421 5.41899 5.48400 5.63416 5.85926 6.19923 6.21260 6.58268 7.06813 7.31817 7.33344 8.74761 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011426 B = 0.001619 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.904346 B =17292.986830 C =19260.765327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.105 4.105 7 C 0.058 3.942 8 N -0.685 5.685 9 C 0.137 3.863 10 C 0.004 3.996 11 C -0.232 4.232 12 C -0.046 4.046 13 O 0.086 5.914 14 N -0.399 5.399 15 N -0.706 5.706 16 C 0.534 3.466 17 O -0.568 6.568 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.342 0.658 40 H 0.041 0.959 41 H 0.107 0.893 42 H 0.191 0.809 43 H 0.261 0.739 44 H 0.414 0.586 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.059 -15.186 30.395 34.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.071 4.071 8 N -0.316 5.316 9 C 0.007 3.993 10 C -0.155 4.155 11 C -0.254 4.254 12 C -0.126 4.126 13 O 0.020 5.980 14 N -0.106 5.106 15 N -0.360 5.360 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.209 0.791 43 H 0.277 0.723 44 H 0.251 0.749 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.314 -12.519 30.453 33.526 hybrid contribution 0.969 -1.456 -1.326 2.195 sum 7.283 -13.976 29.127 33.117 Atomic orbital electron populations 1.22147 0.94961 1.02839 1.01887 1.21078 0.94260 0.96816 0.84371 0.92134 1.21810 0.95331 1.01893 0.95839 1.21520 0.95560 1.00337 0.98159 1.21441 0.93396 1.01643 0.97765 1.22025 0.96376 0.95863 0.92809 1.60522 1.04194 1.60729 1.06183 1.20211 0.88985 0.97509 0.92575 1.23825 1.02515 0.94982 0.94128 1.23078 1.06518 0.96612 0.99176 1.26888 1.00828 0.91776 0.93146 1.84788 1.60536 1.18249 1.34379 1.73852 1.17885 1.16575 1.02250 1.45881 1.67267 1.14467 1.08383 1.20042 0.76726 0.86579 0.84722 1.90686 1.50854 1.17855 1.85211 1.23380 1.05442 1.03125 0.96139 1.85582 1.86719 1.17424 1.02855 1.23217 1.50899 0.98487 0.96864 0.89913 1.26128 0.95078 0.97184 1.00743 1.70185 1.46901 1.15503 1.22203 0.84957 0.78441 0.77768 0.76839 1.19305 1.20321 1.18135 0.90887 0.89899 0.95258 0.89364 0.88893 0.93096 0.92071 0.90545 0.91573 0.95465 0.90596 0.84096 0.94093 0.87516 0.79136 0.72335 0.74867 0.87329 0.87400 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.48 71.98 0.68 -2.59 16 2 C 0.14 2.95 2.57 44.99 0.12 3.07 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 4 C -0.11 -1.44 4.75 30.59 0.15 -1.30 16 5 C -0.12 -1.69 5.10 30.59 0.16 -1.53 16 6 C -0.10 -1.24 5.47 30.59 0.17 -1.08 16 7 C 0.06 0.79 5.68 86.30 0.49 1.28 16 8 N -0.68 -9.79 6.49 -517.96 -3.36 -13.16 16 9 C 0.14 1.96 6.27 85.56 0.54 2.49 16 10 C 0.00 0.06 6.84 43.58 0.30 0.36 16 11 C -0.23 -2.36 11.12 22.40 0.25 -2.11 16 12 C -0.05 -0.33 12.30 67.17 0.83 0.50 16 13 O 0.09 1.27 11.20 71.60 0.80 2.07 16 14 N -0.40 -7.58 12.07 -49.55 -0.60 -8.18 16 15 N -0.71 -17.18 4.53 -442.53 -2.00 -19.18 16 16 C 0.53 19.57 7.81 87.66 0.68 20.25 16 17 O -0.57 -26.44 15.53 -3.06 -0.05 -26.48 16 18 C -0.13 -5.12 6.16 71.24 0.44 -4.69 16 19 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 20 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 24 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.34 5.06 8.72 -89.69 -0.78 4.28 16 40 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 43 H 0.26 -0.87 8.06 -2.91 -0.02 -0.89 16 44 H 0.41 7.23 8.60 -92.71 -0.80 6.43 16 45 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 46 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 47 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -81.43 411.92 1.24 -80.20 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.61 Total: 19.56 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.90 Total: -14.78 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -5.68 Total: -96.47 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.75 Total: -24.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -81.43 1.24 -80.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169257744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.354 kcal (2) G-P(sol) polarization free energy of solvation -81.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds