Wall clock time and date at job start Wed Apr 1 2020 01:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47963 * 111.00165 * 2 1 4 4 C 1.53933 * 86.18416 * 222.42172 * 3 2 1 5 5 C 1.52996 * 113.73562 * 138.07781 * 4 3 2 6 6 N 1.46500 * 109.47487 * 176.89846 * 5 4 3 7 7 C 1.38593 * 120.00241 * 180.02562 * 6 5 4 8 8 N 1.31735 * 119.80261 * 359.97438 * 7 6 5 9 9 C 1.34061 * 119.78003 * 180.02562 * 8 7 6 10 10 C 1.40423 * 120.86061 * 180.02562 * 9 8 7 11 11 C 1.36202 * 119.75927 * 179.97438 * 10 9 8 12 12 C 1.39295 * 120.91998 * 0.02562 * 11 10 9 13 13 C 1.36164 * 120.91629 * 359.97438 * 12 11 10 14 14 C 1.40508 * 119.75720 * 0.02562 * 13 12 11 15 15 N 1.33965 * 120.87647 * 180.02562 * 14 13 12 16 16 C 1.31740 * 119.80575 * 179.97438 * 15 14 13 17 17 N 1.38733 * 119.79767 * 180.02562 * 16 15 14 18 18 C 1.34772 * 120.00153 * 359.97438 * 17 16 15 19 19 O 1.21732 * 119.99801 * 359.97438 * 18 17 16 20 20 C 1.46142 * 119.99954 * 180.02562 * 18 17 16 21 21 H 1.08001 * 120.00469 * 359.97438 * 20 18 17 22 22 C 1.40143 * 119.99902 * 179.97438 * 20 18 17 23 23 N 1.30631 * 119.99852 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 119.99761 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46925 * 90.00148 * 24 22 20 26 26 H 1.48497 * 109.47193 * 209.99781 * 24 22 20 27 27 H 1.48493 * 109.47390 * 330.00110 * 24 22 20 28 28 C 1.48195 * 111.06994 * 260.57015 * 2 1 3 29 29 H 1.08999 * 109.46834 * 59.99704 * 1 2 3 30 30 H 1.08994 * 109.46949 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46734 * 299.99777 * 1 2 3 32 32 H 1.08998 * 113.75475 * 108.09798 * 3 2 1 33 33 H 1.09001 * 113.85756 * 336.75235 * 3 2 1 34 34 H 1.08998 * 113.73032 * 269.25630 * 4 3 2 35 35 H 1.09000 * 109.47006 * 56.90054 * 5 4 3 36 36 H 1.09000 * 109.47426 * 296.90477 * 5 4 3 37 37 H 0.96998 * 119.99726 * 0.02562 * 6 5 4 38 38 H 1.07993 * 120.11929 * 359.95741 * 10 9 8 39 39 H 1.07994 * 119.54043 * 180.28183 * 11 10 9 40 40 H 1.08003 * 119.53817 * 179.97438 * 12 11 10 41 41 H 1.08002 * 120.12326 * 180.02562 * 13 12 11 42 42 H 0.97008 * 119.99759 * 179.97438 * 17 16 15 43 43 H 0.96996 * 119.99691 * 180.02562 * 23 22 20 44 44 H 1.09009 * 113.75364 * 23.23762 * 28 2 1 45 45 H 1.08998 * 113.83019 * 251.81400 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8794 -1.0361 5 6 3.2610 1.8571 -2.1882 6 7 4.2977 1.3226 -3.0746 7 6 4.6878 2.0384 -4.1954 8 7 4.1234 3.1988 -4.4603 9 6 4.5007 3.8906 -5.5449 10 6 3.9147 5.1301 -5.8485 11 6 4.3154 5.8142 -6.9560 12 6 5.3012 5.3016 -7.7961 13 6 5.8911 4.1031 -7.5326 14 6 5.5032 3.3691 -6.3990 15 7 6.0691 2.1877 -6.1181 16 6 5.6896 1.5175 -5.0493 17 7 6.2761 0.2944 -4.7583 18 6 7.2306 -0.2050 -5.5682 19 8 7.5778 0.4170 -6.5553 20 6 7.8480 -1.4937 -5.2619 21 1 7.5397 -2.0457 -4.3863 22 6 8.8401 -2.0132 -6.1043 23 7 9.2127 -1.3458 -7.1637 24 14 9.6298 -3.6601 -5.7124 25 1 8.8564 -4.7474 -6.3643 26 1 11.0255 -3.6729 -6.2192 27 1 9.6350 -3.8692 -4.2423 28 6 2.0018 -0.2266 -1.3642 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.4460 1.6802 0.9483 33 1 1.3022 2.1212 -0.3935 34 1 3.9458 0.5069 -0.5954 35 1 3.5852 2.8177 -1.7879 36 1 2.3364 1.9910 -2.7497 37 1 4.7111 0.4676 -2.8770 38 1 3.1488 5.5392 -5.2064 39 1 3.8656 6.7692 -7.1837 40 1 5.6017 5.8628 -8.6687 41 1 6.6545 3.7179 -8.1925 42 1 5.9992 -0.2014 -3.9718 43 1 9.8991 -1.7055 -7.7469 44 1 1.3042 0.0406 -2.1580 45 1 2.4505 -1.2100 -1.5040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170254241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:43 Heat of formation + Delta-G solvation = 63.603071 kcal Electronic energy + Delta-G solvation = -28867.598368 eV Core-core repulsion = 24885.736811 eV Total energy + Delta-G solvation = -3981.861557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.34613 -40.94193 -39.87291 -38.53102 -36.68337 -35.67552 -34.64260 -34.29845 -32.19930 -30.96955 -30.20833 -28.52344 -27.77237 -27.06650 -25.43007 -24.31232 -23.37011 -22.89932 -22.17595 -20.84686 -20.21473 -19.54110 -18.51198 -18.29175 -17.37492 -17.08439 -16.72411 -16.67081 -16.47957 -16.06758 -15.88322 -15.63375 -15.35200 -15.14664 -14.91881 -14.76788 -14.64879 -14.48675 -13.80218 -13.63271 -13.24821 -13.07506 -12.84930 -12.74270 -12.71960 -12.59686 -12.53582 -12.38830 -12.34614 -12.13641 -11.99108 -11.72177 -11.58832 -11.07314 -10.88106 -10.55341 -10.39114 -9.80286 -9.45861 -9.15085 -8.41788 -8.33256 -6.93635 -0.46751 -0.13214 1.14969 1.41001 1.42609 1.58215 1.90334 1.98196 2.12604 2.40894 2.48916 2.95364 3.21000 3.22133 3.37335 3.50163 3.63241 3.68200 3.77033 4.03987 4.17210 4.17565 4.24070 4.31836 4.37955 4.47219 4.54357 4.55413 4.64602 4.72892 4.74361 4.82452 4.90708 4.99427 5.09328 5.25396 5.26194 5.29560 5.34680 5.36146 5.53381 5.58102 5.69095 5.82269 6.02580 6.05032 6.14710 6.20582 6.71474 6.78499 6.95124 7.38858 8.39096 8.58835 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006485 B = 0.004102 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4316.784325 B = 6824.628039 C =10937.857511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.502 5.502 3 C 0.017 3.983 4 C -0.122 4.122 5 C 0.150 3.850 6 N -0.698 5.698 7 C 0.362 3.638 8 N -0.493 5.493 9 C 0.067 3.933 10 C -0.096 4.096 11 C -0.095 4.095 12 C -0.104 4.104 13 C -0.107 4.107 14 C 0.034 3.966 15 N -0.465 5.465 16 C 0.311 3.689 17 N -0.654 5.654 18 C 0.516 3.484 19 O -0.561 6.561 20 C -0.561 4.561 21 H 0.100 0.900 22 C 0.028 3.972 23 N -0.815 5.815 24 Si 1.003 2.997 25 H -0.262 1.262 26 H -0.276 1.276 27 H -0.244 1.244 28 C 0.003 3.997 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.414 0.586 38 H 0.154 0.846 39 H 0.174 0.826 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.412 0.588 43 H 0.277 0.723 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 7.733 12.036 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.225 5.225 3 C -0.112 4.112 4 C -0.141 4.141 5 C 0.026 3.974 6 N -0.337 5.337 7 C 0.103 3.897 8 N -0.220 5.220 9 C -0.056 4.056 10 C -0.116 4.116 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.127 4.127 14 C -0.089 4.089 15 N -0.187 5.187 16 C 0.055 3.945 17 N -0.304 5.304 18 C 0.321 3.679 19 O -0.440 6.440 20 C -0.597 4.597 21 H 0.118 0.882 22 C -0.188 4.188 23 N -0.444 5.444 24 Si 0.822 3.178 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.167 1.167 28 C -0.125 4.125 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.172 0.828 39 H 0.191 0.809 40 H 0.179 0.821 41 H 0.128 0.872 42 H 0.250 0.750 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.532 7.930 11.659 20.977 hybrid contribution 0.424 -1.008 -0.471 1.191 sum -15.108 6.922 11.188 20.033 Atomic orbital electron populations 1.22888 0.88817 1.02723 1.01654 1.68516 1.10110 1.19162 1.24679 1.23944 0.96136 0.91370 0.99746 1.23208 0.99678 0.95902 0.95346 1.21361 0.89918 0.96901 0.89177 1.44367 1.43201 1.22915 1.23168 1.19131 0.90669 0.90941 0.88979 1.68197 1.28536 1.05711 1.19509 1.19552 0.96671 0.97387 0.91961 1.20885 1.00452 0.91437 0.98801 1.21290 0.96171 1.00968 0.93083 1.21193 0.96181 0.94138 1.00889 1.20847 1.00680 0.95811 0.95387 1.19872 0.97478 0.92720 0.98859 1.68903 1.26367 1.07145 1.16326 1.19867 0.92734 0.89853 0.92090 1.43966 1.39761 1.17128 1.29515 1.19003 0.78874 0.87478 0.82535 1.90717 1.62813 1.61609 1.28822 1.21383 1.22328 1.03186 1.12786 0.88214 1.27032 0.95760 1.02919 0.93097 1.70170 1.24064 1.38533 1.11605 0.84932 0.77096 0.75439 0.80346 1.18626 1.20107 1.16652 1.24173 0.96915 1.00406 0.91056 0.94271 0.91153 0.90520 0.88196 0.89934 0.87084 0.91313 0.91868 0.74807 0.82819 0.80855 0.82140 0.87151 0.74997 0.91328 0.90831 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.08 16 2 N -0.50 -8.08 6.55 -933.31 -6.12 -14.20 16 3 C 0.02 0.23 7.55 86.41 0.65 0.88 16 4 C -0.12 -1.84 3.93 -10.15 -0.04 -1.88 16 5 C 0.15 2.92 5.52 86.38 0.48 3.39 16 6 N -0.70 -17.95 5.68 -343.76 -1.95 -19.90 16 7 C 0.36 13.04 7.52 134.00 1.01 14.04 16 8 N -0.49 -17.49 9.65 -185.07 -1.79 -19.27 16 9 C 0.07 2.47 6.59 40.18 0.26 2.74 16 10 C -0.10 -2.60 9.97 22.33 0.22 -2.37 16 11 C -0.10 -2.11 9.95 22.05 0.22 -1.90 16 12 C -0.10 -2.75 9.95 22.04 0.22 -2.53 16 13 C -0.11 -4.09 9.98 22.34 0.22 -3.86 16 14 C 0.03 1.49 6.59 40.22 0.26 1.75 16 15 N -0.47 -24.21 7.94 -184.96 -1.47 -25.68 16 16 C 0.31 14.23 7.46 133.96 1.00 15.23 16 17 N -0.65 -29.86 5.35 -311.39 -1.67 -31.53 16 18 C 0.52 29.86 7.70 86.29 0.66 30.52 16 19 O -0.56 -37.97 13.26 -4.45 -0.06 -38.03 16 20 C -0.56 -30.46 9.53 24.79 0.24 -30.22 16 21 H 0.10 4.64 7.85 -2.91 -0.02 4.62 16 22 C 0.03 1.52 5.50 85.33 0.47 1.99 16 23 N -0.81 -49.24 11.82 21.85 0.26 -48.99 16 24 Si 1.00 39.44 29.56 68.60 2.03 41.46 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 26 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.24 -8.70 7.11 99.48 0.71 -8.00 16 28 C 0.00 0.05 7.54 86.37 0.65 0.70 16 29 H 0.04 0.49 7.63 -2.39 -0.02 0.47 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 0.95 7.88 -2.39 -0.02 0.94 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.29 7.88 -2.39 -0.02 1.27 16 37 H 0.41 9.39 6.61 -92.71 -0.61 8.77 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 41 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.41 14.69 6.81 -92.70 -0.63 14.06 16 43 H 0.28 15.18 8.29 -92.71 -0.77 14.41 16 44 H 0.07 1.17 7.40 -2.38 -0.02 1.15 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -84.49 377.51 -3.20 -87.69 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.20 Total: 38.90 kcal Atomic # 6 Polarization: 21.78 SS G_CDS: 7.77 Total: 29.54 kcal Atomic # 7 Polarization: -146.83 SS G_CDS: -12.73 Total: -159.56 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.06 Total: -38.03 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Total: -84.49 -3.20 -87.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170254241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.293 kcal (2) G-P(sol) polarization free energy of solvation -84.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds