Wall clock time and date at job start Wed Apr 1 2020 00:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00101 * 2 1 4 4 C 1.50707 * 109.47000 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90043 * 90.02244 * 4 3 2 6 6 C 1.29434 * 117.36344 * 179.97438 * 5 4 3 7 7 S 1.70953 * 110.38925 * 0.02562 * 6 5 4 8 8 C 1.35655 * 122.90436 * 269.98174 * 4 3 2 9 9 C 1.46682 * 126.13367 * 0.02562 * 8 4 3 10 10 O 1.21696 * 119.99892 * 0.02562 * 9 8 4 11 11 N 1.34771 * 120.00484 * 179.97438 * 9 8 4 12 12 C 1.46498 * 120.00218 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47448 * 35.00260 * 12 11 9 14 14 C 1.53005 * 109.47033 * 275.00248 * 12 11 9 15 15 C 1.52999 * 109.47096 * 155.00197 * 12 11 9 16 16 C 1.52996 * 109.47376 * 294.99845 * 15 12 11 17 17 C 1.52999 * 109.47376 * 179.97438 * 16 15 12 18 18 C 1.52999 * 109.47130 * 180.02562 * 17 16 15 19 19 N 1.46508 * 109.46892 * 179.97438 * 18 17 16 20 20 C 1.36937 * 119.99620 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00319 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99898 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99856 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47150 * 60.00436 * 24 22 20 26 26 H 1.48508 * 109.47135 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47605 * 299.99703 * 24 22 20 28 28 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47167 * 300.00238 * 1 2 3 30 30 H 1.08993 * 109.46980 * 59.99965 * 1 2 3 31 31 H 1.08993 * 109.47326 * 59.99974 * 3 2 1 32 32 H 1.08994 * 109.47163 * 299.99518 * 3 2 1 33 33 H 1.07994 * 124.80729 * 179.73712 * 6 5 4 34 34 H 0.97004 * 119.99773 * 0.02562 * 11 9 8 35 35 H 1.09006 * 109.46961 * 299.99597 * 14 12 11 36 36 H 1.08996 * 109.46968 * 59.99840 * 14 12 11 37 37 H 1.09005 * 109.46645 * 180.02562 * 14 12 11 38 38 H 1.09010 * 109.47110 * 55.00048 * 15 12 11 39 39 H 1.09000 * 109.47411 * 174.99349 * 15 12 11 40 40 H 1.08996 * 109.46945 * 300.00103 * 16 15 12 41 41 H 1.09002 * 109.46755 * 59.99986 * 16 15 12 42 42 H 1.09010 * 109.47110 * 300.00203 * 17 16 15 43 43 H 1.09002 * 109.47190 * 60.00252 * 17 16 15 44 44 H 1.09001 * 109.47281 * 299.99772 * 18 17 16 45 45 H 1.09002 * 109.47108 * 59.99920 * 18 17 16 46 46 H 0.96994 * 120.00299 * 359.97438 * 19 18 17 47 47 H 0.97007 * 119.99905 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2221 1.1304 -1.0984 6 6 5.5064 1.0292 -0.9730 7 16 5.9424 0.9940 0.6796 8 6 4.2468 1.1288 1.1399 9 6 3.7231 1.1704 2.5094 10 8 2.5249 1.2644 2.7000 11 7 4.5688 1.1034 3.5566 12 6 4.0456 1.1444 4.9244 13 1 3.0860 0.6288 4.9621 14 6 3.8595 2.6005 5.3558 15 6 5.0324 0.4548 5.8687 16 6 5.1238 -1.0308 5.5147 17 6 6.1110 -1.7203 6.4586 18 6 6.2028 -3.2058 6.1042 19 7 7.1486 -3.8658 7.0077 20 6 7.3950 -5.2068 6.8803 21 1 6.8919 -5.7780 6.1140 22 6 8.2915 -5.8321 7.7359 23 7 8.9044 -5.1362 8.6700 24 14 8.6271 -7.6615 7.5626 25 1 9.1704 -7.9390 6.2087 26 1 9.6145 -8.0830 8.5886 27 1 7.3630 -8.4170 7.7532 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 6.2033 0.9701 -1.7958 34 1 5.5239 1.0280 3.4047 35 1 4.8192 3.1160 5.3183 36 1 3.1566 3.0917 4.6831 37 1 3.4707 2.6309 6.3737 38 1 6.0156 0.9141 5.7654 39 1 4.6873 0.5628 6.8970 40 1 4.1407 -1.4900 5.6180 41 1 5.4690 -1.1387 4.4865 42 1 7.0941 -1.2609 6.3549 43 1 5.7662 -1.6124 7.4870 44 1 5.2199 -3.6655 6.2076 45 1 6.5478 -3.3133 5.0758 46 1 7.6002 -3.3530 7.6960 47 1 9.5312 -5.5731 9.2677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175622056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:44 Heat of formation + Delta-G solvation = -38.144959 kcal Electronic energy + Delta-G solvation = -26801.476396 eV Core-core repulsion = 22918.353913 eV Total energy + Delta-G solvation = -3883.122483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83960 -39.61525 -37.74841 -37.00180 -35.28458 -33.33394 -32.14364 -31.33577 -30.31173 -28.32049 -27.46813 -26.46020 -24.89635 -24.29880 -22.95347 -21.81863 -20.90501 -20.67242 -19.81148 -19.03769 -17.24295 -16.97525 -16.79027 -16.67733 -15.81354 -15.56577 -15.38461 -15.17361 -14.88988 -14.69990 -14.41208 -14.12335 -13.95095 -13.53489 -13.27274 -13.15932 -12.99202 -12.92923 -12.63477 -12.38263 -11.86125 -11.79415 -11.58926 -11.49780 -11.28176 -11.02002 -10.79017 -10.71790 -10.53607 -10.44025 -10.30733 -10.16646 -10.01132 -9.97883 -9.74233 -9.65704 -9.47453 -9.31519 -8.84019 -6.89037 -5.74081 -3.02399 -0.21284 0.73069 1.10395 1.96747 2.73122 2.80254 3.45845 3.49712 3.51118 3.52130 3.98577 4.36747 4.51181 4.57032 4.64493 4.71284 4.84897 4.93760 5.03616 5.14638 5.21923 5.22638 5.31138 5.35634 5.41157 5.48353 5.53642 5.57628 5.61144 5.66424 5.75728 5.85294 5.92205 6.07280 6.15248 6.30192 6.31936 6.38982 6.47029 6.87943 6.90749 6.94563 7.05879 7.19547 7.71998 7.81434 8.45441 9.56057 10.15245 10.49949 11.48991 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.002151 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.245988 B =13014.643548 C =13598.377685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.129 3.871 4 C 0.139 3.861 5 N -0.464 5.464 6 C 0.035 3.965 7 S 0.180 5.820 8 C -0.273 4.273 9 C 0.598 3.402 10 O -0.518 6.518 11 N -0.715 5.715 12 C 0.142 3.858 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.209 0.791 34 H 0.398 0.602 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.019 21.418 -17.758 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C 0.050 3.950 4 C 0.001 3.999 5 N -0.177 5.177 6 C -0.261 4.261 7 S 0.436 5.564 8 C -0.398 4.398 9 C 0.383 3.617 10 O -0.395 6.395 11 N -0.366 5.366 12 C 0.038 3.962 13 H 0.111 0.889 14 C -0.222 4.222 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.163 4.163 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.233 0.767 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.971 21.074 -17.677 29.613 hybrid contribution 0.017 -0.707 -0.117 0.716 sum -10.953 20.367 -17.794 29.180 Atomic orbital electron populations 1.22732 0.80343 1.02941 1.00069 1.87907 1.20068 1.26263 1.95496 1.21015 0.85103 0.86366 1.02523 1.20255 0.97233 0.97171 0.85284 1.66042 1.04956 1.15636 1.31072 1.28747 0.95174 1.01644 1.00500 1.84078 1.04891 1.63953 1.03521 1.25653 0.96893 1.18001 0.99245 1.16617 0.86164 0.76579 0.82324 1.90794 1.14335 1.49591 1.84800 1.46019 1.09941 1.74552 1.06105 1.21133 0.98884 0.96559 0.79626 0.88885 1.22185 1.02107 0.95941 1.01919 1.21957 0.99053 0.96159 0.99379 1.21533 1.00270 0.93792 0.99750 1.21724 0.98748 0.96694 0.99140 1.20649 0.93186 0.90073 0.93632 1.42380 1.50064 1.07170 1.38263 1.19213 1.19677 0.85275 1.12836 0.91291 1.24746 0.99883 0.98101 0.98435 1.69654 1.32116 1.35050 1.21610 0.86253 0.77592 0.85228 0.77049 1.21275 1.21668 1.21269 0.89465 0.93555 0.94146 0.88962 0.91865 0.77426 0.76698 0.92402 0.92198 0.91232 0.91264 0.89890 0.91841 0.92230 0.92112 0.91998 0.96555 0.96630 0.78353 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.81 10.69 -35.23 -0.38 -5.19 16 3 C 0.13 1.45 5.75 36.01 0.21 1.65 16 4 C 0.14 1.61 6.42 -83.89 -0.54 1.07 16 5 N -0.46 -4.94 10.50 -11.53 -0.12 -5.06 16 6 C 0.03 0.26 12.22 51.75 0.63 0.89 16 7 S 0.18 1.30 22.35 -107.50 -2.40 -1.10 16 8 C -0.27 -2.91 6.48 -37.10 -0.24 -3.15 16 9 C 0.60 6.94 7.74 -12.85 -0.10 6.84 16 10 O -0.52 -7.25 13.93 5.19 0.07 -7.17 16 11 N -0.71 -6.81 4.53 -55.11 -0.25 -7.06 16 12 C 0.14 1.33 2.57 -67.93 -0.17 1.16 16 13 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 14 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 15 C -0.13 -1.20 4.75 -26.73 -0.13 -1.33 16 16 C -0.12 -1.42 5.10 -26.73 -0.14 -1.55 16 17 C -0.13 -1.97 5.33 -26.73 -0.14 -2.12 16 18 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 19 N -0.73 -19.25 5.60 -59.90 -0.34 -19.58 16 20 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.94 -28.74 13.06 55.49 0.72 -28.01 16 24 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 1.06 6.01 -51.93 -0.31 0.74 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.21 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.40 3.16 7.79 -40.82 -0.32 2.84 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 42 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -35.42 405.12 -8.66 -44.08 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.63 Total: 5.81 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 0.57 Total: -0.57 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.02 Total: -59.71 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.30 Total: -12.36 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.40 Total: -1.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.42 -8.66 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175622056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.935 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds