Wall clock time and date at job start Wed Apr 1 2020 00:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00101 * 2 1 4 4 C 1.50707 * 109.47000 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90043 * 90.02244 * 4 3 2 6 6 C 1.29434 * 117.36344 * 179.97438 * 5 4 3 7 7 S 1.70953 * 110.38925 * 0.02562 * 6 5 4 8 8 C 1.35655 * 122.90436 * 269.98174 * 4 3 2 9 9 C 1.46682 * 126.13367 * 0.02562 * 8 4 3 10 10 O 1.21696 * 119.99892 * 0.02562 * 9 8 4 11 11 N 1.34771 * 120.00484 * 179.97438 * 9 8 4 12 12 C 1.46498 * 120.00218 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47448 * 35.00260 * 12 11 9 14 14 C 1.53005 * 109.47033 * 275.00248 * 12 11 9 15 15 C 1.52999 * 109.47096 * 155.00197 * 12 11 9 16 16 C 1.52996 * 109.47376 * 294.99845 * 15 12 11 17 17 C 1.52999 * 109.47376 * 179.97438 * 16 15 12 18 18 C 1.52999 * 109.47130 * 180.02562 * 17 16 15 19 19 N 1.46508 * 109.46892 * 179.97438 * 18 17 16 20 20 C 1.36937 * 119.99620 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00319 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99898 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99856 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47150 * 60.00436 * 24 22 20 26 26 H 1.48508 * 109.47135 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47605 * 299.99703 * 24 22 20 28 28 H 1.08996 * 109.47097 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47167 * 300.00238 * 1 2 3 30 30 H 1.08993 * 109.46980 * 59.99965 * 1 2 3 31 31 H 1.08993 * 109.47326 * 59.99974 * 3 2 1 32 32 H 1.08994 * 109.47163 * 299.99518 * 3 2 1 33 33 H 1.07994 * 124.80729 * 179.73712 * 6 5 4 34 34 H 0.97004 * 119.99773 * 0.02562 * 11 9 8 35 35 H 1.09006 * 109.46961 * 299.99597 * 14 12 11 36 36 H 1.08996 * 109.46968 * 59.99840 * 14 12 11 37 37 H 1.09005 * 109.46645 * 180.02562 * 14 12 11 38 38 H 1.09010 * 109.47110 * 55.00048 * 15 12 11 39 39 H 1.09000 * 109.47411 * 174.99349 * 15 12 11 40 40 H 1.08996 * 109.46945 * 300.00103 * 16 15 12 41 41 H 1.09002 * 109.46755 * 59.99986 * 16 15 12 42 42 H 1.09010 * 109.47110 * 300.00203 * 17 16 15 43 43 H 1.09002 * 109.47190 * 60.00252 * 17 16 15 44 44 H 1.09001 * 109.47281 * 299.99772 * 18 17 16 45 45 H 1.09002 * 109.47108 * 59.99920 * 18 17 16 46 46 H 0.96994 * 120.00299 * 359.97438 * 19 18 17 47 47 H 0.97007 * 119.99905 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2221 1.1304 -1.0984 6 6 5.5064 1.0292 -0.9730 7 16 5.9424 0.9940 0.6796 8 6 4.2468 1.1288 1.1399 9 6 3.7231 1.1704 2.5094 10 8 2.5249 1.2644 2.7000 11 7 4.5688 1.1034 3.5566 12 6 4.0456 1.1444 4.9244 13 1 3.0860 0.6288 4.9621 14 6 3.8595 2.6005 5.3558 15 6 5.0324 0.4548 5.8687 16 6 5.1238 -1.0308 5.5147 17 6 6.1110 -1.7203 6.4586 18 6 6.2028 -3.2058 6.1042 19 7 7.1486 -3.8658 7.0077 20 6 7.3950 -5.2068 6.8803 21 1 6.8919 -5.7780 6.1140 22 6 8.2915 -5.8321 7.7359 23 7 8.9044 -5.1362 8.6700 24 14 8.6271 -7.6615 7.5626 25 1 9.1704 -7.9390 6.2087 26 1 9.6145 -8.0830 8.5886 27 1 7.3630 -8.4170 7.7532 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 6.2033 0.9701 -1.7958 34 1 5.5239 1.0280 3.4047 35 1 4.8192 3.1160 5.3183 36 1 3.1566 3.0917 4.6831 37 1 3.4707 2.6309 6.3737 38 1 6.0156 0.9141 5.7654 39 1 4.6873 0.5628 6.8970 40 1 4.1407 -1.4900 5.6180 41 1 5.4690 -1.1387 4.4865 42 1 7.0941 -1.2609 6.3549 43 1 5.7662 -1.6124 7.4870 44 1 5.2199 -3.6655 6.2076 45 1 6.5478 -3.3133 5.0758 46 1 7.6002 -3.3530 7.6960 47 1 9.5312 -5.5731 9.2677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175622056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:43 Heat of formation + Delta-G solvation = -63.539760 kcal Electronic energy + Delta-G solvation = -26802.577597 eV Core-core repulsion = 22918.353913 eV Total energy + Delta-G solvation = -3884.223684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60454 -40.40588 -38.57276 -38.03421 -36.84138 -34.82138 -33.25600 -32.47569 -31.60933 -29.09070 -28.81305 -27.17507 -25.94585 -25.60774 -24.11110 -23.10685 -22.03907 -21.71116 -20.58919 -19.72837 -19.12589 -17.96730 -17.60614 -17.50170 -16.69521 -16.60148 -16.39207 -16.31548 -16.02116 -15.74968 -15.40241 -15.32369 -15.09598 -14.86992 -14.59755 -14.18460 -14.06629 -13.95558 -13.40473 -13.22929 -13.02420 -12.88865 -12.84086 -12.55332 -12.45845 -12.33485 -12.28321 -12.20253 -11.88740 -11.83252 -11.52091 -11.41721 -11.33047 -10.93472 -10.87035 -10.70246 -10.57411 -10.20492 -10.04877 -9.01865 -7.96777 -5.26037 -0.90184 0.09113 0.46327 1.24763 1.46289 1.49683 1.55960 1.92183 2.01171 2.55165 2.83788 3.30209 3.36283 3.55013 3.69787 3.86956 4.00704 4.03974 4.06830 4.14390 4.33293 4.34478 4.40207 4.44911 4.50820 4.57334 4.60353 4.64414 4.75078 4.80472 4.86620 4.87390 4.92445 4.98154 5.00867 5.09304 5.26177 5.31990 5.39880 5.45247 5.51928 5.52924 6.10274 6.26133 6.31130 6.50184 7.01056 7.31882 8.08367 8.32236 9.26591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.002151 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.245988 B =13014.643548 C =13598.377685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.408 6.408 3 C 0.129 3.871 4 C 0.123 3.877 5 N -0.494 5.494 6 C 0.042 3.958 7 S 0.235 5.765 8 C -0.303 4.303 9 C 0.595 3.405 10 O -0.551 6.551 11 N -0.706 5.706 12 C 0.144 3.856 13 H 0.074 0.926 14 C -0.157 4.157 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.112 4.112 18 C 0.148 3.852 19 N -0.748 5.748 20 C -0.252 4.252 21 H 0.072 0.928 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.975 3.025 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.407 0.593 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.011 0.989 45 H 0.017 0.983 46 H 0.375 0.625 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 21.763 -18.678 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.327 6.327 3 C 0.050 3.950 4 C -0.016 4.016 5 N -0.208 5.208 6 C -0.253 4.253 7 S 0.492 5.508 8 C -0.428 4.428 9 C 0.380 3.620 10 O -0.431 6.431 11 N -0.358 5.358 12 C 0.041 3.959 13 H 0.092 0.908 14 C -0.215 4.215 15 C -0.155 4.155 16 C -0.145 4.145 17 C -0.149 4.149 18 C 0.021 3.979 19 N -0.391 5.391 20 C -0.383 4.383 21 H 0.090 0.910 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.804 3.196 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.264 0.736 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.029 0.971 45 H 0.035 0.965 46 H 0.207 0.793 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.993 21.431 -18.618 30.097 hybrid contribution -0.268 -0.805 0.116 0.856 sum -10.261 20.627 -18.502 29.548 Atomic orbital electron populations 1.22894 0.78877 1.03811 1.00923 1.87853 1.21894 1.27304 1.95648 1.21010 0.85630 0.85867 1.02467 1.20386 0.97498 0.97726 0.86030 1.66072 1.06309 1.17415 1.31009 1.29466 0.94780 0.99087 1.01934 1.83822 1.01682 1.62594 1.02702 1.25668 0.99286 1.19252 0.98570 1.16826 0.85936 0.76143 0.83080 1.90769 1.15723 1.51174 1.85403 1.45974 1.10232 1.73786 1.05816 1.21085 0.98000 0.97312 0.79543 0.90813 1.22123 1.02519 0.94726 1.02133 1.21871 0.99970 0.93906 0.99762 1.21440 0.98711 0.95424 0.98936 1.21594 1.00009 0.93537 0.99801 1.20855 0.91491 0.92882 0.92628 1.42613 1.50917 1.06670 1.38916 1.19612 1.19391 0.86704 1.12640 0.91007 1.25601 1.00102 1.02646 0.98425 1.69807 1.32859 1.36748 1.22510 0.85191 0.77438 0.79847 0.77169 1.20251 1.21794 1.20486 0.88624 0.93629 0.92335 0.89935 0.90852 0.73641 0.75635 0.91068 0.93594 0.90104 0.89602 0.88944 0.92586 0.92003 0.91677 0.92217 0.97066 0.96546 0.79348 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -10.69 10.69 -148.98 -1.59 -12.28 16 3 C 0.13 3.00 5.75 71.24 0.41 3.41 16 4 C 0.12 2.85 6.42 42.10 0.27 3.12 16 5 N -0.49 -10.07 10.50 -190.40 -2.00 -12.07 16 6 C 0.04 0.52 12.22 130.60 1.60 2.12 16 7 S 0.24 2.92 22.35 -56.49 -1.26 1.66 16 8 C -0.30 -6.33 6.48 23.88 0.15 -6.17 16 9 C 0.59 13.83 7.74 86.45 0.67 14.50 16 10 O -0.55 -16.02 13.93 -4.34 -0.06 -16.08 16 11 N -0.71 -12.75 4.53 -446.50 -2.02 -14.77 16 12 C 0.14 2.55 2.57 44.99 0.12 2.67 16 13 H 0.07 1.63 7.58 -2.39 -0.02 1.61 16 14 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 15 C -0.12 -1.96 4.75 30.59 0.15 -1.82 16 16 C -0.11 -2.47 5.10 30.59 0.16 -2.31 16 17 C -0.11 -3.38 5.33 30.59 0.16 -3.22 16 18 C 0.15 6.05 6.26 86.38 0.54 6.59 16 19 N -0.75 -39.23 5.60 -343.43 -1.92 -41.16 16 20 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 23 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 24 Si 0.98 46.61 29.55 68.60 2.03 48.63 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 2.03 6.01 -2.39 -0.01 2.01 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.25 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.41 5.69 7.79 -92.71 -0.72 4.97 16 35 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 42 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.37 20.55 7.67 -92.71 -0.71 19.83 16 47 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -77.09 405.12 0.46 -76.63 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.45 Total: 27.50 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 7.46 Total: 1.45 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.66 Total: -127.51 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.65 Total: -28.36 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.26 Total: 1.66 kcal Total: -77.09 0.46 -76.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175622056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.094 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds