Wall clock time and date at job start Wed Apr 1 2020 00:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99943 * 2 1 4 4 C 1.50701 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.30942 * 122.90157 * 90.02751 * 4 3 2 6 6 C 1.29434 * 117.36033 * 179.97438 * 5 4 3 7 7 S 1.70945 * 110.39171 * 0.02562 * 6 5 4 8 8 C 1.35659 * 122.90456 * 270.00417 * 4 3 2 9 9 C 1.46680 * 126.13290 * 0.04285 * 8 4 3 10 10 O 1.21691 * 119.99725 * 0.02562 * 9 8 4 11 11 N 1.34777 * 120.00450 * 179.97438 * 9 8 4 12 12 C 1.46494 * 120.00364 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46886 * 324.99953 * 12 11 9 14 14 C 1.52996 * 109.47482 * 84.99936 * 12 11 9 15 15 C 1.53001 * 109.47174 * 205.00425 * 12 11 9 16 16 C 1.52999 * 109.47317 * 64.99783 * 15 12 11 17 17 C 1.53006 * 109.47144 * 179.97438 * 16 15 12 18 18 C 1.52998 * 109.46870 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.46770 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99866 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00284 * 359.97438 * 20 19 18 22 22 C 1.38819 * 119.99902 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00252 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99742 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47223 * 89.99987 * 24 22 20 26 26 H 1.48496 * 109.47205 * 209.99403 * 24 22 20 27 27 H 1.48502 * 109.47585 * 329.99716 * 24 22 20 28 28 H 1.09002 * 109.47089 * 60.00033 * 1 2 3 29 29 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47255 * 300.00198 * 1 2 3 31 31 H 1.08998 * 109.46976 * 60.00316 * 3 2 1 32 32 H 1.08996 * 109.47547 * 300.00003 * 3 2 1 33 33 H 1.07997 * 124.80046 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99340 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46623 * 60.00257 * 14 12 11 36 36 H 1.08991 * 109.47646 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.47417 * 300.00439 * 14 12 11 38 38 H 1.09003 * 109.47206 * 185.00035 * 15 12 11 39 39 H 1.08993 * 109.47212 * 304.99520 * 15 12 11 40 40 H 1.08993 * 109.47229 * 300.00129 * 16 15 12 41 41 H 1.09003 * 109.46803 * 60.00082 * 16 15 12 42 42 H 1.08996 * 109.46938 * 300.00052 * 17 16 15 43 43 H 1.08994 * 109.46734 * 60.00344 * 17 16 15 44 44 H 1.09005 * 109.47123 * 299.99780 * 18 17 16 45 45 H 1.08993 * 109.47549 * 59.99951 * 18 17 16 46 46 H 0.96997 * 120.00216 * 359.97438 * 19 18 17 47 47 H 0.96992 * 120.00110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2221 1.1306 -1.0985 6 6 5.5064 1.0293 -0.9729 7 16 5.9424 0.9941 0.6796 8 6 4.2468 1.1284 1.1399 9 6 3.7230 1.1691 2.5094 10 8 2.5248 1.2627 2.7000 11 7 4.5687 1.1017 3.5567 12 6 4.0456 1.1430 4.9244 13 1 3.1790 1.8031 4.9622 14 6 3.6328 -0.2658 5.3553 15 6 5.1285 1.6685 5.8690 16 6 5.4523 3.1214 5.5155 17 6 6.5348 3.6471 6.4605 18 6 6.8582 5.1002 6.1074 19 7 7.8950 5.6033 7.0118 20 6 8.3483 6.8893 6.8857 21 1 7.9418 7.5326 6.1193 22 6 9.3305 7.3662 7.7431 23 7 9.8256 6.5826 8.6775 24 14 9.9494 9.1203 7.5706 25 1 9.1245 10.0216 8.4149 26 1 11.3663 9.1906 8.0093 27 1 9.8493 9.5432 6.1506 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 6.2036 0.9740 -1.7958 34 1 5.5238 1.0267 3.4047 35 1 4.4994 -0.9258 5.3175 36 1 3.2440 -0.2353 6.3731 37 1 2.8613 -0.6402 4.6824 38 1 4.7706 1.6158 6.8972 39 1 6.0271 1.0604 5.7656 40 1 5.8103 3.1741 4.4874 41 1 4.5536 3.7295 5.6190 42 1 6.1764 3.5945 7.4885 43 1 7.4335 3.0391 6.3574 44 1 7.2164 5.1532 5.0793 45 1 5.9593 5.7079 6.2107 46 1 8.2599 5.0258 7.7004 47 1 10.5115 6.9159 9.2767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175622057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:45 Heat of formation + Delta-G solvation = -63.620512 kcal Electronic energy + Delta-G solvation = -26735.036593 eV Core-core repulsion = 22850.809407 eV Total energy + Delta-G solvation = -3884.227186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60572 -40.40674 -38.56961 -38.03194 -36.83983 -34.81761 -33.25507 -32.47506 -31.60888 -29.09268 -28.81334 -27.17212 -25.94448 -25.60751 -24.10998 -23.10367 -22.03222 -21.71101 -20.59121 -19.73031 -19.12342 -17.97346 -17.63186 -17.45414 -16.69230 -16.61238 -16.39072 -16.30628 -16.06450 -15.70614 -15.40091 -15.32314 -15.07748 -14.90136 -14.59308 -14.18651 -14.06253 -13.95223 -13.37370 -13.25961 -13.03173 -12.89894 -12.84582 -12.55237 -12.45967 -12.35613 -12.27048 -12.15564 -11.88709 -11.82844 -11.51641 -11.41162 -11.32973 -10.93980 -10.86889 -10.70485 -10.58607 -10.20612 -10.04273 -9.01390 -7.96639 -5.25768 -0.90066 0.08962 0.46349 1.24870 1.46575 1.48576 1.57128 1.94066 1.99273 2.55144 2.82023 3.30169 3.36583 3.55231 3.69745 3.86751 4.00888 4.04392 4.07070 4.14771 4.33818 4.34441 4.40603 4.44772 4.51930 4.57394 4.60553 4.64744 4.75081 4.80225 4.86706 4.87780 4.92755 4.98162 5.01365 5.09672 5.26619 5.31744 5.40291 5.45860 5.52518 5.53531 6.08761 6.26357 6.31112 6.50103 7.01030 7.32059 8.08887 8.32266 9.26882 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.002055 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.740661 B =13624.437775 C =14560.190649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.129 3.871 4 C 0.124 3.876 5 N -0.494 5.494 6 C 0.042 3.958 7 S 0.236 5.764 8 C -0.303 4.303 9 C 0.595 3.405 10 O -0.551 6.551 11 N -0.706 5.706 12 C 0.145 3.855 13 H 0.076 0.924 14 C -0.158 4.158 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.148 3.852 19 N -0.749 5.749 20 C -0.249 4.249 21 H 0.073 0.927 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.975 3.025 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.270 1.270 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.407 0.593 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.012 0.988 46 H 0.374 0.626 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -18.765 -18.788 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C 0.050 3.950 4 C -0.016 4.016 5 N -0.208 5.208 6 C -0.253 4.253 7 S 0.493 5.507 8 C -0.428 4.428 9 C 0.380 3.620 10 O -0.431 6.431 11 N -0.358 5.358 12 C 0.041 3.959 13 H 0.094 0.906 14 C -0.216 4.216 15 C -0.155 4.155 16 C -0.145 4.145 17 C -0.150 4.150 18 C 0.021 3.979 19 N -0.392 5.392 20 C -0.381 4.381 21 H 0.091 0.909 22 C -0.269 4.269 23 N -0.619 5.619 24 Si 0.804 3.196 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.194 1.194 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.206 0.794 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.193 -18.766 -18.743 29.623 hybrid contribution -0.109 1.151 0.156 1.167 sum -13.302 -17.615 -18.587 28.856 Atomic orbital electron populations 1.22907 0.78880 1.03930 1.00836 1.87832 1.21859 1.27057 1.95643 1.20988 0.85679 0.85943 1.02359 1.20371 0.97464 0.97726 0.86043 1.66073 1.06333 1.17414 1.31009 1.29466 0.94754 0.99097 1.01947 1.83818 1.01652 1.62594 1.02679 1.25668 0.99256 1.19301 0.98565 1.16825 0.85959 0.76112 0.83081 1.90769 1.15733 1.51155 1.85405 1.45974 1.10218 1.73812 1.05813 1.21077 0.97330 0.97907 0.79547 0.90585 1.22122 1.01751 0.95614 1.02101 1.21869 0.98644 0.95292 0.99722 1.21440 0.97860 0.96166 0.98988 1.21595 0.99184 0.94415 0.99801 1.20860 0.90121 0.94232 0.92655 1.42628 1.45537 1.12117 1.38874 1.19648 1.15628 0.90330 1.12507 0.90909 1.25612 1.00379 1.02444 0.98503 1.69809 1.32430 1.37215 1.22471 0.85117 0.76943 0.79646 0.77912 1.21372 1.21894 1.19443 0.92565 0.88218 0.93756 0.90135 0.91035 0.73633 0.75632 0.91217 0.90048 0.93848 0.88988 0.89720 0.91821 0.92414 0.92299 0.91757 0.96427 0.96965 0.79379 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.40 -10.02 10.69 -148.98 -1.59 -11.61 16 3 C 0.13 3.02 5.75 71.24 0.41 3.42 16 4 C 0.12 2.86 6.42 42.09 0.27 3.13 16 5 N -0.49 -10.08 10.50 -190.41 -2.00 -12.08 16 6 C 0.04 0.52 12.22 130.60 1.60 2.11 16 7 S 0.24 2.91 22.35 -56.49 -1.26 1.65 16 8 C -0.30 -6.32 6.48 23.88 0.15 -6.17 16 9 C 0.59 13.82 7.74 86.45 0.67 14.49 16 10 O -0.55 -16.02 13.93 -4.32 -0.06 -16.08 16 11 N -0.71 -12.72 4.53 -446.51 -2.02 -14.74 16 12 C 0.15 2.56 2.57 44.99 0.12 2.68 16 13 H 0.08 1.64 7.58 -2.38 -0.02 1.62 16 14 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 15 C -0.12 -1.93 4.75 30.59 0.15 -1.79 16 16 C -0.11 -2.36 5.10 30.60 0.16 -2.20 16 17 C -0.11 -3.33 5.33 30.60 0.16 -3.16 16 18 C 0.15 5.92 6.26 86.38 0.54 6.46 16 19 N -0.75 -38.81 5.60 -343.45 -1.92 -40.73 16 20 C -0.25 -14.21 9.99 84.04 0.84 -13.37 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 24 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 2.04 6.01 -2.39 -0.01 2.02 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.25 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.41 5.67 7.79 -92.71 -0.72 4.95 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.37 7.75 -2.39 -0.02 1.35 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -76.35 405.12 0.46 -75.90 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.45 Total: 27.03 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 7.46 Total: 1.54 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -5.66 Total: -126.78 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.65 Total: -27.68 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.26 Total: 1.65 kcal Total: -76.35 0.46 -75.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175622057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.276 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds