Wall clock time and date at job start Wed Apr 1 2020 00:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99971 * 2 1 4 4 C 1.50706 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.28647 * 124.71614 * 89.99945 * 4 3 2 6 6 C 1.33560 * 115.76461 * 179.97438 * 5 4 3 7 7 C 1.47262 * 123.14329 * 180.02562 * 6 5 4 8 8 O 1.21640 * 120.00093 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00020 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99992 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47120 * 324.99235 * 10 9 7 12 12 C 1.52999 * 109.47548 * 84.99863 * 10 9 7 13 13 C 1.53006 * 109.46857 * 205.00038 * 10 9 7 14 14 C 1.52999 * 109.46997 * 64.99738 * 13 10 9 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46691 * 179.97438 * 16 15 14 18 18 C 1.36938 * 119.99597 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00145 * 22 20 18 24 24 H 1.48505 * 109.47234 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47290 * 300.00140 * 22 20 18 26 26 C 1.35207 * 113.71612 * 0.26806 * 6 5 4 27 27 S 1.70766 * 124.71859 * 269.95638 * 4 3 2 28 28 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46851 * 299.99988 * 1 2 3 30 30 H 1.09001 * 109.47589 * 59.99479 * 1 2 3 31 31 H 1.09007 * 109.47310 * 60.00324 * 3 2 1 32 32 H 1.08999 * 109.47311 * 300.00101 * 3 2 1 33 33 H 0.97001 * 119.99750 * 0.02562 * 9 7 6 34 34 H 1.08992 * 109.47188 * 59.99700 * 12 10 9 35 35 H 1.08997 * 109.46828 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.46911 * 299.99864 * 12 10 9 37 37 H 1.09000 * 109.46866 * 304.99526 * 13 10 9 38 38 H 1.09001 * 109.46611 * 184.99643 * 13 10 9 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 41 41 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 42 42 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 43 43 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 44 44 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 45 45 H 0.96999 * 120.00076 * 0.02562 * 17 16 15 46 46 H 0.97000 * 120.00284 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.58785 * 179.73284 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2425 1.1288 -1.0584 6 6 5.5578 1.0251 -0.8511 7 6 6.5415 0.9479 -1.9443 8 8 7.7273 0.8540 -1.6899 9 7 6.1280 0.9815 -3.2266 10 6 7.1065 0.9042 -4.3141 11 1 8.0189 1.4229 -4.0195 12 6 7.4264 -0.5626 -4.6092 13 6 6.5281 1.5624 -5.5684 14 6 6.3246 3.0570 -5.3123 15 6 5.7468 3.7153 -6.5669 16 6 5.5427 5.2098 -6.3106 17 7 4.9900 5.8402 -7.5120 18 6 4.7216 7.1830 -7.5188 19 1 4.9177 7.7773 -6.6386 20 6 4.1974 7.7802 -8.6569 21 7 3.9578 7.0558 -9.7294 22 14 3.8319 9.6120 -8.6665 23 1 5.0839 10.3680 -8.4090 24 1 3.2821 10.0003 -9.9903 25 1 2.8385 9.9242 -7.6076 26 6 5.9014 0.9923 0.4561 27 16 4.4827 1.1104 1.4026 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8900 33 1 5.1824 1.0568 -3.4294 34 1 6.5142 -1.0813 -4.9038 35 1 8.1541 -0.6200 -5.4186 36 1 7.8385 -1.0315 -3.7156 37 1 5.5706 1.1017 -5.8117 38 1 7.2185 1.4270 -6.4009 39 1 7.2821 3.5176 -5.0690 40 1 5.6342 3.1924 -4.4798 41 1 6.4374 3.5799 -7.3991 42 1 4.7894 3.2547 -6.8106 43 1 4.8518 5.3448 -5.4784 44 1 6.4999 5.6706 -6.0666 45 1 4.8134 5.3063 -8.3024 46 1 3.5919 7.4732 -10.5248 47 1 6.9075 0.9079 0.8396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176805353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:55 Heat of formation + Delta-G solvation = -44.205342 kcal Electronic energy + Delta-G solvation = -26374.307396 eV Core-core repulsion = 22490.922115 eV Total energy + Delta-G solvation = -3883.385281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85670 -39.27899 -38.17283 -36.90289 -35.22699 -33.21778 -32.14004 -31.39562 -30.22079 -28.62837 -27.40512 -26.56918 -25.48918 -24.10684 -22.37223 -21.71280 -20.77190 -20.59661 -20.21459 -19.16347 -17.10206 -17.02232 -16.84803 -16.55593 -16.24293 -15.93889 -15.52504 -14.96655 -14.72454 -14.58907 -14.28578 -14.04515 -13.82571 -13.44987 -13.18736 -13.12564 -12.90585 -12.84873 -12.72448 -12.44052 -12.24357 -11.95654 -11.71880 -11.42005 -11.22793 -10.96354 -10.77168 -10.66056 -10.41000 -10.39271 -10.33470 -10.24024 -10.17764 -10.09212 -9.97439 -9.63246 -9.45018 -9.13707 -8.82221 -6.86884 -5.72288 -3.00486 0.05945 0.76414 1.17052 1.55050 2.95739 3.06601 3.25169 3.46500 3.50212 3.51803 3.78241 4.33230 4.53832 4.62153 4.68724 4.76943 4.81036 4.87507 4.90325 4.95162 4.98584 5.04756 5.23348 5.31026 5.42002 5.46938 5.50880 5.58852 5.66726 5.75120 5.83269 5.94640 6.00826 6.15929 6.27190 6.36322 6.42142 6.43719 6.49986 6.52266 6.94740 6.95330 6.98797 7.40253 7.73253 8.00368 8.47273 9.57721 10.17496 10.52309 11.50885 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.002201 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.765765 B =12717.162796 C =14504.931403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.139 3.861 4 C 0.018 3.982 5 N -0.423 5.423 6 C 0.009 3.991 7 C 0.596 3.404 8 O -0.537 6.537 9 N -0.702 5.702 10 C 0.140 3.860 11 H 0.090 0.910 12 C -0.163 4.163 13 C -0.127 4.127 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.222 4.222 27 S 0.238 5.762 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -19.370 24.665 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.059 3.941 4 C -0.261 4.261 5 N -0.140 5.140 6 C -0.126 4.126 7 C 0.379 3.621 8 O -0.414 6.414 9 N -0.353 5.353 10 C 0.036 3.964 11 H 0.108 0.892 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.585 5.585 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.365 4.365 27 S 0.495 5.505 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.500 -19.387 25.387 31.978 hybrid contribution -0.286 1.069 -1.179 1.617 sum -1.786 -18.318 24.207 30.410 Atomic orbital electron populations 1.22825 0.79715 1.03406 1.00574 1.87940 1.20522 1.26219 1.95576 1.20801 0.84101 0.86185 1.02970 1.26584 1.00812 1.06681 0.92046 1.66861 1.03096 1.12608 1.31410 1.20441 0.89964 1.08591 0.93637 1.17008 0.86536 0.76503 0.82030 1.90816 1.16094 1.50650 1.83884 1.45938 1.11666 1.72894 1.04795 1.21128 0.92577 0.96447 0.86297 0.89153 1.22177 1.01908 0.95953 1.02084 1.21939 1.01908 0.96253 0.96343 1.21527 1.01339 0.93836 0.98586 1.21719 1.00779 0.96726 0.97059 1.20646 0.95869 0.90303 0.90687 1.42387 1.76665 1.06850 1.11975 1.19215 1.34774 0.85049 0.97910 0.91315 1.24746 1.02252 0.98025 0.96173 1.69652 1.50809 1.34743 1.03247 0.86255 0.78025 0.85265 0.76582 1.21280 1.21667 1.21301 1.26717 1.06357 1.06424 0.96964 1.82840 0.94454 1.62492 1.10730 0.89077 0.93634 0.93300 0.90610 0.89539 0.75375 0.92382 0.91345 0.92277 0.91232 0.90057 0.92003 0.92076 0.92046 0.92115 0.96649 0.96599 0.78345 0.93505 0.79074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.17 10.69 -35.23 -0.38 -3.55 16 3 C 0.14 0.98 6.51 36.01 0.23 1.21 16 4 C 0.02 0.16 6.97 -13.61 -0.09 0.07 16 5 N -0.42 -4.75 10.12 -8.51 -0.09 -4.84 16 6 C 0.01 0.11 6.70 -84.53 -0.57 -0.46 16 7 C 0.60 7.78 7.76 -12.59 -0.10 7.68 16 8 O -0.54 -8.26 16.38 5.24 0.09 -8.17 16 9 N -0.70 -8.08 4.53 -54.92 -0.25 -8.33 16 10 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 11 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 12 C -0.16 -1.59 9.48 37.16 0.35 -1.23 16 13 C -0.13 -1.36 4.75 -26.73 -0.13 -1.49 16 14 C -0.11 -1.53 5.10 -26.73 -0.14 -1.67 16 15 C -0.12 -2.08 5.33 -26.73 -0.14 -2.22 16 16 C 0.15 3.25 6.26 -4.04 -0.03 3.22 16 17 N -0.73 -19.60 5.60 -59.91 -0.34 -19.94 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.94 -29.05 13.06 55.49 0.72 -28.32 16 22 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C -0.22 -2.06 10.62 29.65 0.31 -1.75 16 27 S 0.24 1.63 22.92 -107.50 -2.46 -0.84 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.41 4.46 8.12 -40.82 -0.33 4.13 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.19 1.53 8.03 -52.49 -0.42 1.11 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -35.33 410.14 -8.89 -44.22 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.75 Total: 7.39 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 0.40 Total: -1.70 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.05 Total: -61.43 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.29 Total: -11.72 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.46 Total: -0.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.33 -8.89 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176805353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.011 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds