Wall clock time and date at job start Wed Apr 1 2020 00:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99971 * 2 1 4 4 C 1.50706 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.28647 * 124.71614 * 89.99945 * 4 3 2 6 6 C 1.33560 * 115.76461 * 179.97438 * 5 4 3 7 7 C 1.47262 * 123.14329 * 180.02562 * 6 5 4 8 8 O 1.21640 * 120.00093 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00020 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99992 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47120 * 324.99235 * 10 9 7 12 12 C 1.52999 * 109.47548 * 84.99863 * 10 9 7 13 13 C 1.53006 * 109.46857 * 205.00038 * 10 9 7 14 14 C 1.52999 * 109.46997 * 64.99738 * 13 10 9 15 15 C 1.53006 * 109.46623 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46691 * 179.97438 * 16 15 14 18 18 C 1.36938 * 119.99597 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00321 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00119 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47163 * 60.00145 * 22 20 18 24 24 H 1.48505 * 109.47234 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47290 * 300.00140 * 22 20 18 26 26 C 1.35207 * 113.71612 * 0.26806 * 6 5 4 27 27 S 1.70766 * 124.71859 * 269.95638 * 4 3 2 28 28 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46851 * 299.99988 * 1 2 3 30 30 H 1.09001 * 109.47589 * 59.99479 * 1 2 3 31 31 H 1.09007 * 109.47310 * 60.00324 * 3 2 1 32 32 H 1.08999 * 109.47311 * 300.00101 * 3 2 1 33 33 H 0.97001 * 119.99750 * 0.02562 * 9 7 6 34 34 H 1.08992 * 109.47188 * 59.99700 * 12 10 9 35 35 H 1.08997 * 109.46828 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.46911 * 299.99864 * 12 10 9 37 37 H 1.09000 * 109.46866 * 304.99526 * 13 10 9 38 38 H 1.09001 * 109.46611 * 184.99643 * 13 10 9 39 39 H 1.09000 * 109.47486 * 60.00167 * 14 13 10 40 40 H 1.09001 * 109.47362 * 299.99445 * 14 13 10 41 41 H 1.08993 * 109.46955 * 300.00075 * 15 14 13 42 42 H 1.09000 * 109.47050 * 59.99904 * 15 14 13 43 43 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 44 44 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 45 45 H 0.96999 * 120.00076 * 0.02562 * 17 16 15 46 46 H 0.97000 * 120.00284 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.58785 * 179.73284 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2425 1.1288 -1.0584 6 6 5.5578 1.0251 -0.8511 7 6 6.5415 0.9479 -1.9443 8 8 7.7273 0.8540 -1.6899 9 7 6.1280 0.9815 -3.2266 10 6 7.1065 0.9042 -4.3141 11 1 8.0189 1.4229 -4.0195 12 6 7.4264 -0.5626 -4.6092 13 6 6.5281 1.5624 -5.5684 14 6 6.3246 3.0570 -5.3123 15 6 5.7468 3.7153 -6.5669 16 6 5.5427 5.2098 -6.3106 17 7 4.9900 5.8402 -7.5120 18 6 4.7216 7.1830 -7.5188 19 1 4.9177 7.7773 -6.6386 20 6 4.1974 7.7802 -8.6569 21 7 3.9578 7.0558 -9.7294 22 14 3.8319 9.6120 -8.6665 23 1 5.0839 10.3680 -8.4090 24 1 3.2821 10.0003 -9.9903 25 1 2.8385 9.9242 -7.6076 26 6 5.9014 0.9923 0.4561 27 16 4.4827 1.1104 1.4026 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8900 33 1 5.1824 1.0568 -3.4294 34 1 6.5142 -1.0813 -4.9038 35 1 8.1541 -0.6200 -5.4186 36 1 7.8385 -1.0315 -3.7156 37 1 5.5706 1.1017 -5.8117 38 1 7.2185 1.4270 -6.4009 39 1 7.2821 3.5176 -5.0690 40 1 5.6342 3.1924 -4.4798 41 1 6.4374 3.5799 -7.3991 42 1 4.7894 3.2547 -6.8106 43 1 4.8518 5.3448 -5.4784 44 1 6.4999 5.6706 -6.0666 45 1 4.8134 5.3063 -8.3024 46 1 3.5919 7.4732 -10.5248 47 1 6.9075 0.9079 0.8396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176805353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:54 Heat of formation + Delta-G solvation = -69.434734 kcal Electronic energy + Delta-G solvation = -26375.401424 eV Core-core repulsion = 22490.922115 eV Total energy + Delta-G solvation = -3884.479309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67030 -40.10516 -38.72192 -38.03320 -36.85808 -34.80708 -33.12241 -32.62007 -31.60331 -29.20726 -28.84618 -27.08797 -26.29581 -25.79054 -23.74359 -22.71615 -22.06502 -21.67246 -20.98890 -19.93060 -19.13720 -17.72913 -17.59311 -17.37493 -16.83225 -16.69734 -16.55658 -16.43458 -16.15831 -15.53332 -15.35755 -15.29485 -14.98785 -14.75747 -14.60218 -14.18827 -14.04424 -13.68803 -13.29389 -13.17731 -13.11474 -12.97167 -12.90387 -12.84794 -12.47722 -12.37611 -12.31930 -12.21159 -11.90053 -11.85421 -11.54424 -11.43115 -11.26485 -10.99981 -10.94650 -10.79012 -10.70044 -10.26783 -9.94216 -9.03470 -7.97544 -5.27304 -0.62939 0.15218 0.50135 0.74990 1.45342 1.49255 1.55604 2.14693 2.19643 2.54466 2.62159 3.18181 3.35339 3.56160 3.71954 3.97380 4.02355 4.03241 4.12691 4.15764 4.18142 4.31959 4.38253 4.40697 4.54965 4.57508 4.60415 4.61789 4.71528 4.75436 4.84403 4.90506 4.91061 4.95966 4.97853 5.08207 5.23212 5.28713 5.39973 5.43602 5.49948 5.52371 6.06122 6.20791 6.25056 6.53410 7.07135 7.30591 8.06634 8.30992 9.26008 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.002201 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.765765 B =12717.162796 C =14504.931403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.137 3.863 4 C -0.004 4.004 5 N -0.448 5.448 6 C -0.019 4.019 7 C 0.591 3.409 8 O -0.570 6.570 9 N -0.697 5.697 10 C 0.141 3.859 11 H 0.076 0.924 12 C -0.156 4.156 13 C -0.116 4.116 14 C -0.105 4.105 15 C -0.111 4.111 16 C 0.149 3.851 17 N -0.749 5.749 18 C -0.253 4.253 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.233 4.233 27 S 0.324 5.676 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.014 0.986 44 H 0.014 0.986 45 H 0.374 0.626 46 H 0.253 0.747 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -19.386 26.245 32.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.057 3.943 4 C -0.283 4.283 5 N -0.166 5.166 6 C -0.155 4.155 7 C 0.376 3.624 8 O -0.450 6.450 9 N -0.348 5.348 10 C 0.037 3.963 11 H 0.094 0.906 12 C -0.215 4.215 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.149 4.149 16 C 0.023 3.977 17 N -0.391 5.391 18 C -0.385 4.385 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.202 1.202 26 C -0.376 4.376 27 S 0.582 5.418 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.206 0.794 46 H 0.062 0.938 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.234 -19.413 27.002 33.331 hybrid contribution -0.091 1.048 -1.548 1.872 sum -2.325 -18.365 25.454 31.474 Atomic orbital electron populations 1.22993 0.78250 1.04212 1.01541 1.87893 1.22202 1.26954 1.95791 1.20971 0.82950 0.86078 1.04280 1.27063 1.02011 1.06292 0.92939 1.66842 1.03032 1.13780 1.32927 1.20332 0.90185 1.11045 0.93941 1.17302 0.86498 0.75903 0.82727 1.90780 1.17383 1.52443 1.84418 1.45964 1.11894 1.72234 1.04686 1.21114 0.91900 0.97207 0.86057 0.90629 1.22116 1.02636 0.94758 1.01948 1.21851 1.02811 0.94140 0.96592 1.21417 1.00773 0.95404 0.96710 1.21587 1.01067 0.93668 0.98595 1.20833 0.95098 0.93023 0.88765 1.42618 1.76956 1.06364 1.13200 1.19624 1.34333 0.86392 0.98103 0.90941 1.25633 1.02573 1.02764 0.95866 1.69812 1.51879 1.36587 1.03762 0.85163 0.78104 0.79639 0.76565 1.20354 1.21758 1.20213 1.27021 1.08175 1.05376 0.97042 1.82485 0.91508 1.59961 1.07868 0.88442 0.91774 0.93207 0.87610 0.89939 0.75010 0.91552 0.89802 0.93705 0.90221 0.88785 0.92272 0.92376 0.92026 0.92077 0.96773 0.96806 0.79388 0.93821 0.78344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.25 10.69 -148.98 -1.59 -7.85 16 3 C 0.14 1.73 6.51 71.24 0.46 2.19 16 4 C 0.00 -0.07 6.97 88.58 0.62 0.54 16 5 N -0.45 -10.01 10.12 -180.84 -1.83 -11.84 16 6 C -0.02 -0.45 6.70 40.56 0.27 -0.18 16 7 C 0.59 15.80 7.76 86.62 0.67 16.47 16 8 O -0.57 -18.08 16.38 -4.16 -0.07 -18.15 16 9 N -0.70 -16.15 4.53 -445.92 -2.02 -18.17 16 10 C 0.14 3.01 2.57 44.99 0.12 3.13 16 11 H 0.08 1.87 7.58 -2.38 -0.02 1.85 16 12 C -0.16 -2.91 9.48 71.98 0.68 -2.22 16 13 C -0.12 -2.35 4.75 30.60 0.15 -2.20 16 14 C -0.10 -2.71 5.10 30.60 0.16 -2.56 16 15 C -0.11 -3.64 5.33 30.60 0.16 -3.47 16 16 C 0.15 6.35 6.26 86.38 0.54 6.89 16 17 N -0.75 -40.25 5.60 -343.45 -1.92 -42.18 16 18 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 22 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.23 -4.17 10.62 67.12 0.71 -3.46 16 27 S 0.32 3.79 22.92 -56.49 -1.29 2.49 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.41 9.01 8.12 -92.71 -0.75 8.25 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.37 21.08 7.67 -92.71 -0.71 20.37 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.20 3.09 8.03 -2.91 -0.02 3.06 16 Total: -1.00 -76.32 410.14 0.19 -76.13 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: -0.49 Total: 32.33 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 7.10 Total: -1.38 kcal Atomic # 7 Polarization: -127.12 SS G_CDS: -5.49 Total: -132.61 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.66 Total: -26.00 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.29 Total: 2.49 kcal Total: -76.32 0.19 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176805353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.699 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds