Wall clock time and date at job start Wed Apr 1 2020 00:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99981 * 2 1 4 4 C 1.50699 * 109.47457 * 180.02562 * 3 2 1 5 5 N 1.29423 * 124.80612 * 89.97317 * 4 3 2 6 6 C 1.30942 * 117.36578 * 180.02562 * 5 4 3 7 7 C 1.35663 * 114.19205 * 359.97438 * 6 5 4 8 8 C 1.46677 * 126.13207 * 180.02562 * 7 6 5 9 9 O 1.21686 * 120.00312 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99941 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99732 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47381 * 35.00069 * 11 10 8 13 13 C 1.53006 * 109.47249 * 274.99921 * 11 10 8 14 14 C 1.52999 * 109.46944 * 155.00564 * 11 10 8 15 15 C 1.53009 * 109.46984 * 294.99645 * 14 11 10 16 16 C 1.52989 * 109.47113 * 179.97438 * 15 14 11 17 17 C 1.53009 * 109.47113 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47006 * 180.02562 * 17 16 15 19 19 C 1.36939 * 119.99758 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99912 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00114 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99694 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99897 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47374 * 89.99890 * 23 21 19 25 25 H 1.48497 * 109.46770 * 209.99858 * 23 21 19 26 26 H 1.48508 * 109.46940 * 329.99434 * 23 21 19 27 27 S 1.70955 * 124.80182 * 270.33133 * 4 3 2 28 28 H 1.09003 * 109.46519 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47111 * 299.99596 * 1 2 3 30 30 H 1.09000 * 109.47381 * 60.00578 * 1 2 3 31 31 H 1.09005 * 109.47348 * 59.99716 * 3 2 1 32 32 H 1.09010 * 109.46921 * 300.00154 * 3 2 1 33 33 H 1.07998 * 122.90619 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99903 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 38 38 H 1.08997 * 109.47756 * 54.99315 * 14 11 10 39 39 H 1.09001 * 109.47317 * 175.00198 * 14 11 10 40 40 H 1.08999 * 109.47112 * 300.00392 * 15 14 11 41 41 H 1.09001 * 109.46642 * 60.00139 * 15 14 11 42 42 H 1.08999 * 109.47464 * 300.00192 * 16 15 14 43 43 H 1.09001 * 109.47240 * 60.00521 * 16 15 14 44 44 H 1.08997 * 109.46604 * 300.00391 * 17 16 15 45 45 H 1.08993 * 109.46833 * 59.99859 * 17 16 15 46 46 H 0.96996 * 120.00415 * 0.02562 * 18 17 16 47 47 H 0.96997 * 119.99395 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1279 -1.0636 6 6 5.5429 1.0250 -0.8946 7 6 5.9333 0.9946 0.4043 8 6 7.3128 0.8856 0.8904 9 8 8.2333 0.8130 0.0979 10 7 7.5611 0.8670 2.2151 11 6 8.9390 0.7587 2.7006 12 1 9.6052 1.2970 2.0264 13 6 9.3473 -0.7150 2.7520 14 6 9.0347 1.3636 4.1027 15 6 8.7476 2.8648 4.0312 16 6 8.8426 3.4695 5.4332 17 6 8.5561 4.9708 5.3616 18 7 8.6477 5.5500 6.7042 19 6 8.4293 6.8892 6.8884 20 1 8.1891 7.5184 6.0441 21 6 8.5156 7.4380 8.1606 22 7 8.3061 8.7253 8.3375 23 14 8.9304 6.3497 9.6210 24 1 10.4030 6.3116 9.8076 25 1 8.2904 6.8975 10.8440 26 1 8.4271 4.9748 9.3725 27 16 4.4851 1.1012 1.4027 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8901 33 1 6.2395 0.9692 -1.7180 34 1 6.8274 0.9253 2.8468 35 1 9.2791 -1.1460 1.7532 36 1 10.3724 -0.7955 3.1137 37 1 8.6811 -1.2532 3.4263 38 1 8.3049 0.8849 4.7556 39 1 10.0372 1.2040 4.4996 40 1 9.4773 3.3436 3.3783 41 1 7.7450 3.0244 3.6342 42 1 8.1126 2.9906 6.0858 43 1 9.8450 3.3099 5.8306 44 1 9.2865 5.4493 4.7092 45 1 7.5540 5.1308 4.9641 46 1 8.8638 4.9850 7.4624 47 1 8.3668 9.1088 9.2264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176847774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:48 Heat of formation + Delta-G solvation = -37.267581 kcal Electronic energy + Delta-G solvation = -26142.197229 eV Core-core repulsion = 22259.112792 eV Total energy + Delta-G solvation = -3883.084437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64685 -39.73483 -38.29973 -37.09287 -35.47443 -33.41710 -32.33834 -31.48136 -30.63810 -28.83057 -27.80751 -26.72967 -24.73837 -24.20597 -22.85497 -21.65597 -20.98958 -20.84568 -20.05450 -19.07257 -17.55172 -17.27887 -17.16648 -16.79267 -16.14455 -15.82990 -15.56463 -15.17816 -14.92266 -14.69062 -14.40879 -14.28906 -14.13085 -13.61698 -13.36003 -13.24634 -13.09082 -12.92897 -12.74730 -12.50756 -12.04988 -12.01788 -11.95482 -11.72122 -11.50140 -11.21747 -10.91778 -10.86971 -10.62460 -10.44563 -10.37796 -10.33891 -10.14438 -10.11491 -9.98381 -9.59303 -9.51977 -9.37440 -8.89085 -7.22437 -5.76672 -3.11934 -0.29107 0.65411 1.08289 1.96054 2.71506 2.79999 3.12064 3.36540 3.39334 3.44357 3.77454 4.30249 4.31891 4.50388 4.58986 4.69009 4.71826 4.76993 4.81043 4.84106 4.85845 4.89144 5.14274 5.15379 5.25837 5.29824 5.45602 5.49909 5.55289 5.60553 5.61688 5.75747 5.83081 5.98076 6.04030 6.06327 6.15382 6.22612 6.33340 6.40640 6.76294 6.80073 7.01747 7.15939 7.76163 8.00341 8.42688 9.22095 9.94531 10.14798 11.41893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.002162 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.745939 B =12948.893842 C =14827.271508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.135 3.865 4 C 0.051 3.949 5 N -0.460 5.460 6 C 0.119 3.881 7 C -0.289 4.289 8 C 0.599 3.401 9 O -0.523 6.523 10 N -0.716 5.716 11 C 0.141 3.859 12 H 0.094 0.906 13 C -0.164 4.164 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 S 0.201 5.799 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.191 0.809 34 H 0.398 0.602 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 -23.228 -16.967 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.055 3.945 4 C -0.224 4.224 5 N -0.175 5.175 6 C -0.039 4.039 7 C -0.414 4.414 8 C 0.383 3.617 9 O -0.401 6.401 10 N -0.367 5.367 11 C 0.038 3.962 12 H 0.112 0.888 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.583 5.583 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 S 0.457 5.543 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.208 0.792 34 H 0.233 0.767 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.509 -23.170 -16.967 30.938 hybrid contribution 0.262 -0.395 0.716 0.859 sum -11.247 -23.565 -16.251 30.756 Atomic orbital electron populations 1.22838 0.79599 1.03502 1.00583 1.87950 1.20638 1.26013 1.95587 1.20870 0.84123 0.86350 1.03113 1.26955 1.00757 1.03112 0.91561 1.66168 1.04931 1.15248 1.31168 1.22204 0.90574 0.95497 0.95634 1.25930 0.98340 1.18977 0.98121 1.16665 0.85807 0.76467 0.82716 1.90851 1.44206 1.49897 1.55139 1.46027 1.10027 1.74615 1.06070 1.21132 0.82136 0.96697 0.96282 0.88825 1.22189 1.01875 0.95699 1.02474 1.21962 1.03392 0.96454 0.94790 1.21528 1.02082 0.93941 0.97826 1.21777 1.01763 0.97060 0.96138 1.20629 0.98191 0.90266 0.88022 1.42735 1.86711 1.07200 1.03710 1.19086 1.40080 0.83232 0.94966 0.89286 1.24700 1.01893 0.95682 0.97145 1.69709 1.56359 1.10328 1.21932 0.86508 0.78247 0.80138 0.83406 1.21078 1.21725 1.20376 1.83940 0.96304 1.63365 1.10666 0.88977 0.93438 0.93420 0.90304 0.89520 0.79189 0.76699 0.92090 0.91219 0.92394 0.91275 0.89886 0.91615 0.92051 0.92148 0.92021 0.95671 0.95803 0.80735 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.00 10.69 -35.23 -0.38 -3.38 16 3 C 0.14 0.90 6.51 36.01 0.23 1.13 16 4 C 0.05 0.45 7.02 -13.29 -0.09 0.36 16 5 N -0.46 -4.88 10.51 -11.50 -0.12 -5.00 16 6 C 0.12 1.23 11.09 -18.85 -0.21 1.02 16 7 C -0.29 -2.90 6.48 -37.10 -0.24 -3.14 16 8 C 0.60 6.71 7.75 -12.85 -0.10 6.61 16 9 O -0.52 -7.43 16.53 5.20 0.09 -7.34 16 10 N -0.72 -6.55 4.53 -55.11 -0.25 -6.80 16 11 C 0.14 1.27 2.57 -67.93 -0.17 1.10 16 12 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 13 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 14 C -0.13 -1.11 4.75 -26.73 -0.13 -1.24 16 15 C -0.12 -1.29 5.10 -26.73 -0.14 -1.43 16 16 C -0.13 -1.85 5.33 -26.73 -0.14 -2.00 16 17 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 18 N -0.76 -18.35 5.41 -59.91 -0.32 -18.67 16 19 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 22 N -0.94 -29.68 13.97 55.49 0.78 -28.90 16 23 Si 0.89 22.22 27.74 -169.99 -4.71 17.50 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 27 S 0.20 1.58 22.31 -107.50 -2.40 -0.82 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.40 2.99 7.79 -40.82 -0.32 2.67 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.36 8.42 5.53 -40.82 -0.23 8.20 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 406.94 15.07 6.13 6.13 Total: -1.00 -35.78 406.94 -8.69 -44.47 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.70 Total: 4.38 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.20 Total: -1.57 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.08 Total: -59.38 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.29 Total: -10.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.40 Total: -0.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.78 -8.69 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176847774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.204 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds