Wall clock time and date at job start Wed Apr 1 2020 00:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99981 * 2 1 4 4 C 1.50699 * 109.47457 * 180.02562 * 3 2 1 5 5 N 1.29423 * 124.80612 * 89.97317 * 4 3 2 6 6 C 1.30942 * 117.36578 * 180.02562 * 5 4 3 7 7 C 1.35663 * 114.19205 * 359.97438 * 6 5 4 8 8 C 1.46677 * 126.13207 * 180.02562 * 7 6 5 9 9 O 1.21686 * 120.00312 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99941 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99732 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47381 * 35.00069 * 11 10 8 13 13 C 1.53006 * 109.47249 * 274.99921 * 11 10 8 14 14 C 1.52999 * 109.46944 * 155.00564 * 11 10 8 15 15 C 1.53009 * 109.46984 * 294.99645 * 14 11 10 16 16 C 1.52989 * 109.47113 * 179.97438 * 15 14 11 17 17 C 1.53009 * 109.47113 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47006 * 180.02562 * 17 16 15 19 19 C 1.36939 * 119.99758 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99912 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00114 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99694 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99897 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47374 * 89.99890 * 23 21 19 25 25 H 1.48497 * 109.46770 * 209.99858 * 23 21 19 26 26 H 1.48508 * 109.46940 * 329.99434 * 23 21 19 27 27 S 1.70955 * 124.80182 * 270.33133 * 4 3 2 28 28 H 1.09003 * 109.46519 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47111 * 299.99596 * 1 2 3 30 30 H 1.09000 * 109.47381 * 60.00578 * 1 2 3 31 31 H 1.09005 * 109.47348 * 59.99716 * 3 2 1 32 32 H 1.09010 * 109.46921 * 300.00154 * 3 2 1 33 33 H 1.07998 * 122.90619 * 179.97438 * 6 5 4 34 34 H 0.96998 * 119.99903 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 38 38 H 1.08997 * 109.47756 * 54.99315 * 14 11 10 39 39 H 1.09001 * 109.47317 * 175.00198 * 14 11 10 40 40 H 1.08999 * 109.47112 * 300.00392 * 15 14 11 41 41 H 1.09001 * 109.46642 * 60.00139 * 15 14 11 42 42 H 1.08999 * 109.47464 * 300.00192 * 16 15 14 43 43 H 1.09001 * 109.47240 * 60.00521 * 16 15 14 44 44 H 1.08997 * 109.46604 * 300.00391 * 17 16 15 45 45 H 1.08993 * 109.46833 * 59.99859 * 17 16 15 46 46 H 0.96996 * 120.00415 * 0.02562 * 18 17 16 47 47 H 0.96997 * 119.99395 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1279 -1.0636 6 6 5.5429 1.0250 -0.8946 7 6 5.9333 0.9946 0.4043 8 6 7.3128 0.8856 0.8904 9 8 8.2333 0.8130 0.0979 10 7 7.5611 0.8670 2.2151 11 6 8.9390 0.7587 2.7006 12 1 9.6052 1.2970 2.0264 13 6 9.3473 -0.7150 2.7520 14 6 9.0347 1.3636 4.1027 15 6 8.7476 2.8648 4.0312 16 6 8.8426 3.4695 5.4332 17 6 8.5561 4.9708 5.3616 18 7 8.6477 5.5500 6.7042 19 6 8.4293 6.8892 6.8884 20 1 8.1891 7.5184 6.0441 21 6 8.5156 7.4380 8.1606 22 7 8.3061 8.7253 8.3375 23 14 8.9304 6.3497 9.6210 24 1 10.4030 6.3116 9.8076 25 1 8.2904 6.8975 10.8440 26 1 8.4271 4.9748 9.3725 27 16 4.4851 1.1012 1.4027 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8901 33 1 6.2395 0.9692 -1.7180 34 1 6.8274 0.9253 2.8468 35 1 9.2791 -1.1460 1.7532 36 1 10.3724 -0.7955 3.1137 37 1 8.6811 -1.2532 3.4263 38 1 8.3049 0.8849 4.7556 39 1 10.0372 1.2040 4.4996 40 1 9.4773 3.3436 3.3783 41 1 7.7450 3.0244 3.6342 42 1 8.1126 2.9906 6.0858 43 1 9.8450 3.3099 5.8306 44 1 9.2865 5.4493 4.7092 45 1 7.5540 5.1308 4.9641 46 1 8.8638 4.9850 7.4624 47 1 8.3668 9.1088 9.2264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176847774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:47 Heat of formation + Delta-G solvation = -63.313626 kcal Electronic energy + Delta-G solvation = -26143.326670 eV Core-core repulsion = 22259.112792 eV Total energy + Delta-G solvation = -3884.213878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42254 -40.49570 -38.79590 -38.09198 -36.96525 -34.83494 -33.46310 -32.75758 -31.75366 -29.47372 -29.04463 -27.15568 -25.86200 -25.20108 -23.89074 -23.07514 -22.14941 -21.72940 -20.80346 -19.76692 -19.61372 -18.03734 -17.66602 -17.53442 -16.68274 -16.63578 -16.46641 -16.40981 -16.09944 -15.85808 -15.62190 -15.17939 -15.01212 -14.87858 -14.66796 -14.29279 -14.17034 -13.74166 -13.57217 -13.30726 -13.13972 -12.96550 -12.93063 -12.72380 -12.48449 -12.40901 -12.28370 -12.08845 -11.88816 -11.78513 -11.56556 -11.45862 -11.39370 -10.97343 -10.92290 -10.77484 -10.71156 -10.25842 -10.10590 -9.31155 -8.03974 -5.38270 -1.00813 -0.01616 0.37958 1.20759 1.37775 1.42795 1.50322 1.95944 1.99363 2.48496 2.59588 3.23636 3.27011 3.46339 3.65958 3.76740 3.90651 3.99581 4.06717 4.10415 4.21131 4.32540 4.33046 4.37309 4.52450 4.56966 4.58402 4.63366 4.72528 4.86962 4.87755 4.89237 4.90047 4.96990 5.00901 5.07821 5.24750 5.31107 5.37487 5.49534 5.51563 5.73901 6.00948 6.20353 6.27439 6.44638 6.96645 7.07069 7.83186 8.03723 9.17662 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.002162 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.745939 B =12948.893842 C =14827.271508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.132 3.868 4 C 0.041 3.959 5 N -0.485 5.485 6 C 0.111 3.889 7 C -0.310 4.310 8 C 0.598 3.402 9 O -0.562 6.562 10 N -0.706 5.706 11 C 0.142 3.858 12 H 0.075 0.925 13 C -0.159 4.159 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.116 4.116 17 C 0.149 3.851 18 N -0.760 5.760 19 C -0.241 4.241 20 H 0.051 0.949 21 C -0.069 4.069 22 N -0.985 5.985 23 Si 0.963 3.037 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.247 1.247 27 S 0.255 5.745 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.191 0.809 34 H 0.408 0.592 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.020 0.980 46 H 0.368 0.632 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 -25.750 -15.285 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.052 3.948 4 C -0.233 4.233 5 N -0.201 5.201 6 C -0.048 4.048 7 C -0.435 4.435 8 C 0.383 3.617 9 O -0.442 6.442 10 N -0.358 5.358 11 C 0.038 3.962 12 H 0.093 0.907 13 C -0.217 4.217 14 C -0.155 4.155 15 C -0.149 4.149 16 C -0.154 4.154 17 C 0.023 3.977 18 N -0.406 5.406 19 C -0.372 4.372 20 H 0.069 0.931 21 C -0.260 4.260 22 N -0.636 5.636 23 Si 0.789 3.211 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.171 1.171 27 S 0.512 5.488 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.207 0.793 34 H 0.245 0.755 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.201 0.799 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.160 -25.737 -15.287 32.310 hybrid contribution 0.378 0.459 0.104 0.603 sum -11.783 -25.278 -15.183 31.754 Atomic orbital electron populations 1.23027 0.77943 1.04368 1.01708 1.87902 1.22501 1.26647 1.95831 1.21075 0.82648 0.86372 1.04701 1.27489 1.02027 1.01976 0.91825 1.66210 1.05067 1.16518 1.32286 1.22297 0.90824 0.95614 0.96062 1.25899 0.98851 1.19957 0.98745 1.16829 0.85875 0.75927 0.83033 1.90825 1.45429 1.51829 1.56128 1.45994 1.10604 1.73599 1.05579 1.21134 0.81616 0.97346 0.96113 0.90711 1.22137 1.03046 0.94678 1.01818 1.21879 1.04727 0.94252 0.94626 1.21463 1.02030 0.95646 0.95719 1.21661 1.02381 0.93105 0.98219 1.20857 0.97646 0.93692 0.85522 1.42744 1.86489 1.05493 1.05883 1.19060 1.39033 0.85147 0.93962 0.93091 1.25640 1.02414 0.97298 1.00689 1.69907 1.58201 1.12759 1.22691 0.85296 0.78131 0.79306 0.78370 1.20339 1.22101 1.17081 1.83631 0.94171 1.62019 1.08974 0.88328 0.91978 0.92620 0.87775 0.88875 0.79256 0.75545 0.93881 0.89915 0.91032 0.89427 0.88649 0.92471 0.91949 0.90968 0.91382 0.96652 0.96182 0.79890 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.86 10.69 -148.98 -1.59 -7.45 16 3 C 0.13 1.54 6.51 71.24 0.46 2.01 16 4 C 0.04 0.69 7.02 88.46 0.62 1.31 16 5 N -0.48 -10.29 10.51 -190.31 -2.00 -12.29 16 6 C 0.11 2.35 11.09 84.23 0.93 3.28 16 7 C -0.31 -6.13 6.48 23.88 0.15 -5.98 16 8 C 0.60 13.30 7.75 86.45 0.67 13.97 16 9 O -0.56 -16.40 16.53 -4.30 -0.07 -16.47 16 10 N -0.71 -11.90 4.53 -446.49 -2.02 -13.92 16 11 C 0.14 2.30 2.57 44.99 0.12 2.41 16 12 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 13 C -0.16 -2.23 9.48 71.98 0.68 -1.54 16 14 C -0.12 -1.64 4.75 30.60 0.15 -1.49 16 15 C -0.11 -2.20 5.10 30.59 0.16 -2.05 16 16 C -0.12 -2.97 5.33 30.59 0.16 -2.81 16 17 C 0.15 5.58 6.26 86.38 0.54 6.12 16 18 N -0.76 -35.76 5.41 -343.45 -1.86 -37.62 16 19 C -0.24 -14.06 10.47 84.03 0.88 -13.18 16 20 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 22 N -0.99 -63.78 13.97 21.65 0.30 -63.48 16 23 Si 0.96 45.06 27.74 68.60 1.90 46.97 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 27 S 0.25 3.60 22.31 -56.49 -1.26 2.34 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.19 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.41 5.15 7.79 -92.71 -0.72 4.43 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.23 7.75 -2.39 -0.02 1.22 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.37 16.08 5.53 -92.71 -0.51 15.57 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -79.18 406.94 0.33 -78.85 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.32 Total: 23.24 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 7.24 Total: -0.18 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -5.57 Total: -127.30 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.66 Total: -23.92 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.26 Total: 2.34 kcal Total: -79.18 0.33 -78.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176847774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.537 kcal (2) G-P(sol) polarization free energy of solvation -79.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds