Wall clock time and date at job start Wed Apr 1 2020 00:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00082 * 2 1 4 4 C 1.50700 * 109.47505 * 180.02562 * 3 2 1 5 5 N 1.29424 * 124.80750 * 89.97700 * 4 3 2 6 6 C 1.30939 * 117.36882 * 180.02562 * 5 4 3 7 7 C 1.35665 * 114.18955 * 359.97438 * 6 5 4 8 8 C 1.46682 * 126.13248 * 180.02562 * 7 6 5 9 9 O 1.21693 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00182 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27909 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53004 * 109.47065 * 204.72115 * 11 10 8 15 15 C 1.53003 * 109.46807 * 64.99542 * 14 11 10 16 16 C 1.53004 * 109.46807 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46906 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47120 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00302 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99762 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00497 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99667 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00402 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46675 * 89.99720 * 23 21 19 25 25 H 1.48494 * 109.47198 * 209.99579 * 23 21 19 26 26 H 1.48497 * 109.47038 * 330.00110 * 23 21 19 27 27 S 1.70957 * 124.80416 * 270.29727 * 4 3 2 28 28 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47187 * 299.99255 * 1 2 3 30 30 H 1.08994 * 109.47164 * 59.99832 * 1 2 3 31 31 H 1.09004 * 109.46886 * 60.00207 * 3 2 1 32 32 H 1.08997 * 109.47744 * 300.00512 * 3 2 1 33 33 H 1.08001 * 122.90714 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 37 37 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 38 38 H 1.08993 * 109.47108 * 184.99578 * 14 11 10 39 39 H 1.08998 * 109.47048 * 305.00090 * 14 11 10 40 40 H 1.08988 * 109.47304 * 300.00405 * 15 14 11 41 41 H 1.08998 * 109.46869 * 60.00439 * 15 14 11 42 42 H 1.09002 * 109.47337 * 300.00120 * 16 15 14 43 43 H 1.08998 * 109.47048 * 60.00548 * 16 15 14 44 44 H 1.09002 * 109.46788 * 299.99926 * 17 16 15 45 45 H 1.08998 * 109.47252 * 60.00143 * 17 16 15 46 46 H 0.97005 * 120.00133 * 359.97438 * 18 17 16 47 47 H 0.96996 * 120.00098 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1279 -1.0636 6 6 5.5429 1.0250 -0.8946 7 6 5.9332 0.9945 0.4043 8 6 7.3128 0.8855 0.8905 9 8 8.2333 0.8128 0.0978 10 7 7.5610 0.8657 2.2150 11 6 8.9394 0.7630 2.7005 12 1 9.5146 0.1258 2.0289 13 6 9.5694 2.1565 2.7458 14 6 8.9414 0.1565 4.1052 15 6 8.4268 -1.2829 4.0399 16 6 8.4294 -1.8896 5.4445 17 6 7.9154 -3.3292 5.3792 18 7 7.9174 -3.9100 6.7241 19 6 7.4956 -5.1988 6.9140 20 1 7.1612 -5.7871 6.0723 21 6 7.4980 -5.7493 8.1883 22 7 7.9061 -5.0326 9.2141 23 14 6.9220 -7.5073 8.4475 24 1 8.0772 -8.4311 8.3158 25 1 6.3338 -7.6406 9.8044 26 1 5.8973 -7.8478 7.4281 27 16 4.4853 1.1020 1.4027 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 6.2395 0.9692 -1.7181 34 1 6.8273 0.9240 2.8468 35 1 10.5948 2.0801 3.1075 36 1 9.5679 2.5886 1.7452 37 1 8.9942 2.7936 3.4175 38 1 9.9567 0.1617 4.5017 39 1 8.2942 0.7445 4.7558 40 1 7.4116 -1.2882 3.6434 41 1 9.0741 -1.8710 3.3893 42 1 9.4449 -1.8844 5.8407 43 1 7.7824 -1.3017 6.0955 44 1 6.9000 -3.3347 4.9829 45 1 8.5627 -3.9170 4.7283 46 1 8.2181 -3.3818 7.4801 47 1 7.9074 -5.4171 10.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176847775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:51 Heat of formation + Delta-G solvation = -41.178238 kcal Electronic energy + Delta-G solvation = -26149.165093 eV Core-core repulsion = 22265.911077 eV Total energy + Delta-G solvation = -3883.254016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62072 -39.70217 -38.25906 -37.00935 -35.28616 -33.34562 -32.30955 -31.39222 -30.32290 -28.79381 -27.46983 -26.68739 -24.69632 -24.18308 -22.91745 -21.84831 -20.90650 -20.67496 -20.01910 -19.04642 -17.31160 -17.13508 -16.98235 -16.75001 -16.10901 -15.78874 -15.50374 -15.09350 -14.88800 -14.70464 -14.42241 -14.20448 -13.94706 -13.53534 -13.21668 -13.17051 -12.98485 -12.93226 -12.90079 -12.43331 -12.00846 -11.97886 -11.79653 -11.50645 -11.29201 -11.02013 -10.81002 -10.72055 -10.58934 -10.42843 -10.32485 -10.29737 -10.12436 -9.99232 -9.95528 -9.66297 -9.49350 -9.33191 -8.84550 -6.89085 -5.74326 -3.02608 -0.27353 0.67625 1.10326 1.98052 2.74502 2.83564 3.16309 3.45167 3.50042 3.51942 3.79402 4.31788 4.36109 4.53789 4.65206 4.70287 4.72944 4.83016 4.84279 4.87863 4.91243 4.94106 5.21991 5.22373 5.35116 5.41364 5.54057 5.58855 5.62148 5.66520 5.75205 5.85189 5.92342 6.07207 6.14020 6.29800 6.31365 6.38723 6.45826 6.46688 6.90510 6.94344 7.05102 7.18222 7.72394 7.79514 8.45201 9.55899 10.15063 10.49704 11.48848 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008299 B = 0.002311 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.004238 B =12112.304000 C =14873.230914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.136 3.864 4 C 0.049 3.951 5 N -0.460 5.460 6 C 0.118 3.882 7 C -0.289 4.289 8 C 0.598 3.402 9 O -0.524 6.524 10 N -0.715 5.715 11 C 0.141 3.859 12 H 0.093 0.907 13 C -0.164 4.164 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 S 0.202 5.798 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.191 0.809 34 H 0.398 0.602 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 21.225 -18.765 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.056 3.944 4 C -0.225 4.225 5 N -0.175 5.175 6 C -0.040 4.040 7 C -0.413 4.413 8 C 0.383 3.617 9 O -0.402 6.402 10 N -0.367 5.367 11 C 0.037 3.963 12 H 0.111 0.889 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.163 4.163 17 C 0.024 3.976 18 N -0.379 5.379 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 S 0.458 5.542 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.208 0.792 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.598 20.860 -18.743 29.641 hybrid contribution -0.219 -0.676 0.046 0.712 sum -9.817 20.184 -18.697 29.212 Atomic orbital electron populations 1.22840 0.79580 1.03662 1.00413 1.87984 1.20642 1.25801 1.95539 1.20845 0.84149 0.86521 1.02862 1.26969 1.00778 1.03192 0.91594 1.66165 1.04918 1.15265 1.31183 1.22200 0.90569 0.95588 0.95634 1.25944 0.98361 1.18892 0.98119 1.16669 0.85777 0.76518 0.82744 1.90851 1.44261 1.49901 1.55143 1.46031 1.10043 1.74541 1.06039 1.21143 0.81439 0.97318 0.96369 0.88880 1.22186 1.01140 0.96483 1.02395 1.21958 1.03139 0.96847 0.94608 1.21537 1.01245 0.94515 0.98075 1.21723 1.01619 0.97282 0.95686 1.20651 0.97031 0.90966 0.88915 1.42387 1.78908 1.13272 1.03318 1.19257 1.35203 0.89423 0.93029 0.91238 1.24748 1.02392 0.98409 0.95648 1.69663 1.53718 1.36275 0.98773 0.86177 0.78266 0.84681 0.77033 1.21720 1.21759 1.20751 1.83958 0.96303 1.63295 1.10595 0.88850 0.93478 0.93513 0.90476 0.89653 0.79204 0.76688 0.91195 0.92153 0.92389 0.89857 0.91251 0.92222 0.91837 0.91988 0.92100 0.96609 0.96555 0.78352 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.30 10.69 -35.23 -0.38 -3.67 16 3 C 0.14 0.92 6.51 36.01 0.23 1.15 16 4 C 0.05 0.45 7.02 -13.29 -0.09 0.35 16 5 N -0.46 -4.94 10.51 -11.50 -0.12 -5.06 16 6 C 0.12 1.24 11.09 -18.85 -0.21 1.03 16 7 C -0.29 -2.96 6.48 -37.09 -0.24 -3.20 16 8 C 0.60 6.89 7.75 -12.85 -0.10 6.79 16 9 O -0.52 -7.58 16.53 5.20 0.09 -7.49 16 10 N -0.72 -6.85 4.53 -55.11 -0.25 -7.10 16 11 C 0.14 1.34 2.57 -67.93 -0.17 1.17 16 12 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 13 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 14 C -0.13 -1.21 4.75 -26.73 -0.13 -1.34 16 15 C -0.12 -1.42 5.10 -26.73 -0.14 -1.55 16 16 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 17 C 0.15 3.14 6.26 -4.04 -0.03 3.12 16 18 N -0.73 -19.25 5.60 -59.91 -0.34 -19.59 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.94 -28.76 13.06 55.49 0.72 -28.03 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 S 0.20 1.63 22.31 -107.50 -2.40 -0.77 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.40 3.18 7.79 -40.82 -0.32 2.86 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.72 7.75 -51.94 -0.40 0.32 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -35.32 410.05 -9.05 -44.37 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.74 Total: 5.34 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.20 Total: -1.94 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.02 Total: -59.78 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.29 Total: -11.16 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.40 Total: -0.77 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.32 -9.05 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176847775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds