Wall clock time and date at job start Wed Apr 1 2020 00:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00082 * 2 1 4 4 C 1.50700 * 109.47505 * 180.02562 * 3 2 1 5 5 N 1.29424 * 124.80750 * 89.97700 * 4 3 2 6 6 C 1.30939 * 117.36882 * 180.02562 * 5 4 3 7 7 C 1.35665 * 114.18955 * 359.97438 * 6 5 4 8 8 C 1.46682 * 126.13248 * 180.02562 * 7 6 5 9 9 O 1.21693 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00182 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27909 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53004 * 109.47065 * 204.72115 * 11 10 8 15 15 C 1.53003 * 109.46807 * 64.99542 * 14 11 10 16 16 C 1.53004 * 109.46807 * 179.97438 * 15 14 11 17 17 C 1.52999 * 109.46906 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47120 * 180.02562 * 17 16 15 19 19 C 1.36932 * 120.00302 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99762 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00497 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99667 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00402 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46675 * 89.99720 * 23 21 19 25 25 H 1.48494 * 109.47198 * 209.99579 * 23 21 19 26 26 H 1.48497 * 109.47038 * 330.00110 * 23 21 19 27 27 S 1.70957 * 124.80416 * 270.29727 * 4 3 2 28 28 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47187 * 299.99255 * 1 2 3 30 30 H 1.08994 * 109.47164 * 59.99832 * 1 2 3 31 31 H 1.09004 * 109.46886 * 60.00207 * 3 2 1 32 32 H 1.08997 * 109.47744 * 300.00512 * 3 2 1 33 33 H 1.08001 * 122.90714 * 179.97438 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 37 37 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 38 38 H 1.08993 * 109.47108 * 184.99578 * 14 11 10 39 39 H 1.08998 * 109.47048 * 305.00090 * 14 11 10 40 40 H 1.08988 * 109.47304 * 300.00405 * 15 14 11 41 41 H 1.08998 * 109.46869 * 60.00439 * 15 14 11 42 42 H 1.09002 * 109.47337 * 300.00120 * 16 15 14 43 43 H 1.08998 * 109.47048 * 60.00548 * 16 15 14 44 44 H 1.09002 * 109.46788 * 299.99926 * 17 16 15 45 45 H 1.08998 * 109.47252 * 60.00143 * 17 16 15 46 46 H 0.97005 * 120.00133 * 359.97438 * 18 17 16 47 47 H 0.96996 * 120.00098 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1279 -1.0636 6 6 5.5429 1.0250 -0.8946 7 6 5.9332 0.9945 0.4043 8 6 7.3128 0.8855 0.8905 9 8 8.2333 0.8128 0.0978 10 7 7.5610 0.8657 2.2150 11 6 8.9394 0.7630 2.7005 12 1 9.5146 0.1258 2.0289 13 6 9.5694 2.1565 2.7458 14 6 8.9414 0.1565 4.1052 15 6 8.4268 -1.2829 4.0399 16 6 8.4294 -1.8896 5.4445 17 6 7.9154 -3.3292 5.3792 18 7 7.9174 -3.9100 6.7241 19 6 7.4956 -5.1988 6.9140 20 1 7.1612 -5.7871 6.0723 21 6 7.4980 -5.7493 8.1883 22 7 7.9061 -5.0326 9.2141 23 14 6.9220 -7.5073 8.4475 24 1 8.0772 -8.4311 8.3158 25 1 6.3338 -7.6406 9.8044 26 1 5.8973 -7.8478 7.4281 27 16 4.4853 1.1020 1.4027 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 6.2395 0.9692 -1.7181 34 1 6.8273 0.9240 2.8468 35 1 10.5948 2.0801 3.1075 36 1 9.5679 2.5886 1.7452 37 1 8.9942 2.7936 3.4175 38 1 9.9567 0.1617 4.5017 39 1 8.2942 0.7445 4.7558 40 1 7.4116 -1.2882 3.6434 41 1 9.0741 -1.8710 3.3893 42 1 9.4449 -1.8844 5.8407 43 1 7.7824 -1.3017 6.0955 44 1 6.9000 -3.3347 4.9829 45 1 8.5627 -3.9170 4.7283 46 1 8.2181 -3.3818 7.4801 47 1 7.9074 -5.4171 10.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176847775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:50 Heat of formation + Delta-G solvation = -66.195967 kcal Electronic energy + Delta-G solvation = -26150.249943 eV Core-core repulsion = 22265.911077 eV Total energy + Delta-G solvation = -3884.338866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41721 -40.49056 -38.79386 -38.04882 -36.85230 -34.83094 -33.34729 -32.56160 -31.60419 -29.44743 -28.82298 -27.15663 -25.98170 -25.22991 -24.02376 -23.13253 -22.04160 -21.72620 -20.79288 -19.75799 -19.12962 -18.03203 -17.64682 -17.55578 -16.69419 -16.67277 -16.45818 -16.40755 -16.05722 -15.70241 -15.40424 -15.32919 -15.11882 -14.97258 -14.59459 -14.19288 -14.07248 -13.73569 -13.29787 -13.28247 -13.06615 -12.90399 -12.84921 -12.71726 -12.46327 -12.40248 -12.30478 -12.15833 -11.89190 -11.83631 -11.55013 -11.42462 -11.38132 -10.94433 -10.91818 -10.77218 -10.69927 -10.25464 -10.10307 -9.01921 -7.97078 -5.26265 -1.00468 -0.00823 0.38796 1.21205 1.46391 1.48444 1.57085 1.94853 2.00966 2.54989 2.61965 3.23958 3.36218 3.53889 3.69803 3.78112 4.00089 4.04356 4.08982 4.14793 4.21906 4.33331 4.33960 4.39743 4.51234 4.58651 4.59601 4.64240 4.74195 4.86871 4.88339 4.89809 4.91731 4.97777 5.00765 5.07952 5.26136 5.31490 5.38276 5.45380 5.51294 5.52626 6.03098 6.26077 6.27721 6.45009 6.96726 7.31766 8.08229 8.31973 9.26558 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008299 B = 0.002311 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3373.004238 B =12112.304000 C =14873.230914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.132 3.868 4 C 0.041 3.959 5 N -0.484 5.484 6 C 0.111 3.889 7 C -0.310 4.310 8 C 0.598 3.402 9 O -0.561 6.561 10 N -0.706 5.706 11 C 0.143 3.857 12 H 0.075 0.925 13 C -0.158 4.158 14 C -0.117 4.117 15 C -0.108 4.108 16 C -0.112 4.112 17 C 0.147 3.853 18 N -0.749 5.749 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.270 1.270 27 S 0.253 5.747 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.191 0.809 34 H 0.408 0.592 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.016 0.984 45 H 0.012 0.988 46 H 0.375 0.625 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 21.893 -18.437 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.052 3.948 4 C -0.233 4.233 5 N -0.200 5.200 6 C -0.047 4.047 7 C -0.434 4.434 8 C 0.383 3.617 9 O -0.442 6.442 10 N -0.358 5.358 11 C 0.039 3.961 12 H 0.093 0.907 13 C -0.216 4.216 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.150 4.150 17 C 0.021 3.979 18 N -0.391 5.391 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.195 1.195 27 S 0.510 5.490 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.208 0.792 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.207 0.793 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.823 21.542 -18.424 30.342 hybrid contribution 0.098 -0.872 -0.080 0.881 sum -10.725 20.670 -18.504 29.743 Atomic orbital electron populations 1.23012 0.77944 1.04229 1.01797 1.87925 1.22535 1.26923 1.95836 1.21098 0.82565 0.86290 1.04825 1.27518 1.02067 1.01936 0.91767 1.66211 1.05027 1.16524 1.32258 1.22299 0.90839 0.95591 0.96021 1.25890 0.98783 1.20002 0.98755 1.16833 0.85909 0.75944 0.82972 1.90825 1.45481 1.51788 1.56085 1.45997 1.10531 1.73615 1.05635 1.21115 0.81227 0.97885 0.95872 0.90679 1.22130 1.02010 0.95560 1.01909 1.21873 1.03981 0.94899 0.94762 1.21450 1.01548 0.96072 0.95515 1.21594 1.01146 0.94259 0.97957 1.20861 0.97116 0.93676 0.86254 1.42621 1.78728 1.12706 1.05073 1.19644 1.34623 0.90672 0.93258 0.90997 1.25601 1.03137 1.02612 0.95457 1.69811 1.55131 1.38031 0.98996 0.85119 0.77932 0.79680 0.76921 1.21339 1.21796 1.19478 1.83678 0.94273 1.62024 1.09031 0.88785 0.91846 0.92365 0.87565 0.88630 0.79217 0.75585 0.90009 0.93645 0.91010 0.88875 0.89599 0.91968 0.92453 0.92195 0.91703 0.96554 0.96994 0.79347 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.58 10.69 -148.98 -1.59 -8.17 16 3 C 0.13 1.54 6.51 71.24 0.46 2.00 16 4 C 0.04 0.70 7.02 88.46 0.62 1.32 16 5 N -0.48 -10.29 10.51 -190.30 -2.00 -12.29 16 6 C 0.11 2.37 11.09 84.23 0.93 3.31 16 7 C -0.31 -6.25 6.48 23.88 0.15 -6.09 16 8 C 0.60 13.67 7.75 86.45 0.67 14.34 16 9 O -0.56 -16.64 16.53 -4.33 -0.07 -16.71 16 10 N -0.71 -12.68 4.53 -446.50 -2.02 -14.70 16 11 C 0.14 2.52 2.57 44.99 0.12 2.64 16 12 H 0.08 1.64 7.58 -2.39 -0.02 1.63 16 13 C -0.16 -2.38 9.48 71.98 0.68 -1.69 16 14 C -0.12 -1.95 4.75 30.60 0.15 -1.80 16 15 C -0.11 -2.46 5.10 30.60 0.16 -2.30 16 16 C -0.11 -3.37 5.33 30.60 0.16 -3.21 16 17 C 0.15 6.01 6.26 86.38 0.54 6.55 16 18 N -0.75 -39.22 5.60 -343.46 -1.92 -41.14 16 19 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 22 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 23 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 S 0.25 3.69 22.31 -56.49 -1.26 2.43 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.41 5.68 7.79 -92.71 -0.72 4.96 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 46 H 0.37 20.54 7.67 -92.70 -0.71 19.83 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -76.06 410.05 0.19 -75.87 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.46 Total: 26.63 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 7.20 Total: -1.01 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.66 Total: -127.69 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.66 Total: -24.88 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.26 Total: 2.43 kcal Total: -76.06 0.19 -75.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176847775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.675 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds