Wall clock time and date at job start Wed Apr 1 2020 00:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47384 * 2 1 4 4 C 1.46761 * 124.35484 * 89.99571 * 3 2 1 5 5 C 1.54483 * 105.47479 * 162.98745 * 4 3 2 6 6 C 1.54623 * 101.76476 * 25.41567 * 5 4 3 7 7 H 1.08997 * 110.48869 * 216.38790 * 6 5 4 8 8 N 1.46903 * 110.48418 * 93.88408 * 6 5 4 9 9 C 1.46898 * 111.00103 * 155.00339 * 8 6 5 10 10 H 1.09005 * 110.91456 * 328.89267 * 9 8 6 11 11 C 1.55158 * 111.00433 * 204.99863 * 9 8 6 12 12 C 1.54318 * 102.94194 * 206.42014 * 11 9 8 13 13 N 1.47021 * 107.27468 * 22.19014 * 12 11 9 14 14 C 1.34774 * 125.65194 * 181.02225 * 13 12 11 15 15 O 1.21281 * 120.00138 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99738 * 0.02562 * 14 13 12 17 17 S 1.80996 * 109.47055 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00259 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00080 * 0.28240 * 18 17 16 20 20 C 1.38805 * 120.00285 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99709 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00492 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00509 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00339 * 22 20 18 26 26 C 1.47429 * 108.69859 * 1.28731 * 13 12 11 27 27 C 1.34424 * 124.34717 * 270.00204 * 3 2 1 28 28 O 1.21276 * 124.94255 * 0.43807 * 27 3 2 29 29 H 1.08992 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46849 * 300.00527 * 1 2 3 31 31 H 1.09007 * 109.47090 * 59.99967 * 1 2 3 32 32 H 1.08994 * 109.47228 * 239.99733 * 2 1 3 33 33 H 1.09001 * 109.47173 * 119.99566 * 2 1 3 34 34 H 1.09003 * 110.24524 * 43.98733 * 4 3 2 35 35 H 1.08999 * 110.31952 * 282.02649 * 4 3 2 36 36 H 1.08999 * 110.96489 * 267.29626 * 5 4 3 37 37 H 1.09002 * 110.99775 * 143.55180 * 5 4 3 38 38 H 1.00904 * 110.99332 * 278.95128 * 8 6 5 39 39 H 1.09003 * 110.72223 * 88.05099 * 11 9 8 40 40 H 1.09001 * 110.71921 * 324.78714 * 11 9 8 41 41 H 1.09004 * 109.88307 * 262.77502 * 12 11 9 42 42 H 1.09004 * 109.88116 * 141.61204 * 12 11 9 43 43 H 1.09005 * 109.46991 * 60.00046 * 16 14 13 44 44 H 1.08994 * 109.47632 * 300.00284 * 16 14 13 45 45 H 0.97000 * 119.99481 * 179.97438 * 21 20 18 46 46 H 1.09006 * 110.36519 * 94.48212 * 26 13 12 47 47 H 1.08997 * 110.36452 * 216.80060 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 3.1745 3.3442 0.7485 6 6 2.7696 3.4754 -0.7380 7 1 3.6322 3.7482 -1.3458 8 7 1.6982 4.4684 -0.8933 9 6 1.7018 5.0395 -2.2466 10 1 2.7125 5.0685 -2.6541 11 6 1.0578 6.4511 -2.2563 12 6 0.5335 6.5819 -3.7018 13 7 0.3740 5.2204 -4.2332 14 6 -0.0455 4.9059 -5.4748 15 8 -0.1405 3.7432 -5.8065 16 6 -0.3966 5.9990 -6.4509 17 16 -0.9202 5.2622 -8.0190 18 6 -1.2608 6.7223 -8.9446 19 1 -1.1179 7.6932 -8.4936 20 6 -1.7066 6.6250 -10.2555 21 7 -1.8754 5.4418 -10.8070 22 14 -2.0669 8.1730 -11.2369 23 1 -0.8376 8.6049 -11.9492 24 1 -3.1395 7.8941 -12.2252 25 1 -2.5101 9.2508 -10.3164 26 6 0.7428 4.2560 -3.1808 27 6 2.2712 2.0963 -1.1099 28 8 2.1210 1.6945 -2.2442 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8324 1.5533 1.9383 35 1 1.3644 2.5309 1.6442 36 1 4.2332 3.1033 0.8447 37 1 2.9313 4.2520 1.3007 38 1 0.7989 4.0675 -0.6724 39 1 1.8043 7.2171 -2.0460 40 1 0.2365 6.5052 -1.5417 41 1 1.2514 7.1346 -4.3080 42 1 -0.4281 7.0951 -3.7023 43 1 0.4764 6.6295 -6.6198 44 1 -1.2076 6.6029 -6.0441 45 1 -2.1873 5.3738 -11.7230 46 1 -0.1435 3.9335 -2.6343 47 1 1.2547 3.3975 -3.6156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181106779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:11 Heat of formation + Delta-G solvation = -57.189270 kcal Electronic energy + Delta-G solvation = -27580.893612 eV Core-core repulsion = 23696.945306 eV Total energy + Delta-G solvation = -3883.948306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09604 -39.66963 -37.53085 -36.80613 -35.38684 -33.12319 -32.39327 -30.78483 -29.56243 -29.35359 -27.82412 -26.18562 -25.41166 -23.96578 -23.23597 -21.91962 -21.13345 -19.82242 -19.22315 -17.70409 -17.37277 -17.03010 -16.55518 -16.29180 -16.03172 -15.17846 -14.77755 -14.69893 -14.60672 -14.47378 -14.02991 -13.93299 -13.85903 -13.75044 -13.37025 -13.25216 -12.85305 -12.79458 -12.53142 -12.43003 -12.29923 -12.23956 -11.90215 -11.72073 -11.70157 -11.49339 -11.31421 -11.03419 -10.98518 -10.92265 -10.73326 -10.36060 -9.78161 -9.35726 -9.13110 -9.03131 -8.89442 -8.40414 -8.18059 -6.45865 -6.17791 -3.88146 2.16829 2.57642 2.94636 3.15054 3.24848 3.27839 3.32610 3.54603 3.75248 3.89713 4.03219 4.23750 4.39182 4.42811 4.48149 4.62628 4.66197 4.76179 4.83912 4.95837 5.00916 5.08219 5.12648 5.14186 5.17111 5.21202 5.31616 5.42927 5.43359 5.49270 5.58297 5.63704 5.69005 5.71686 5.81067 5.83848 5.95791 6.03377 6.17296 6.19096 6.38502 6.55599 6.68507 6.75782 7.63006 7.75785 7.82506 8.38944 8.65004 9.27130 10.89684 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002184 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.591408 B =12816.901579 C =13717.127935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.100 3.900 5 C -0.124 4.124 6 C 0.054 3.946 7 H 0.113 0.887 8 N -0.644 5.644 9 C 0.072 3.928 10 H 0.098 0.902 11 C -0.116 4.116 12 C 0.100 3.900 13 N -0.624 5.624 14 C 0.546 3.454 15 O -0.513 6.513 16 C -0.145 4.145 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.082 3.918 27 C 0.481 3.519 28 O -0.511 6.511 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.347 0.653 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.057 0.943 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 -2.778 31.273 33.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.355 5.355 4 C -0.023 4.023 5 C -0.162 4.162 6 C -0.060 4.060 7 H 0.131 0.869 8 N -0.275 5.275 9 C -0.039 4.039 10 H 0.116 0.884 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.363 5.363 14 C 0.335 3.665 15 O -0.387 6.387 16 C -0.295 4.295 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.042 4.042 27 C 0.266 3.734 28 O -0.385 6.385 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.166 0.834 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.377 -4.421 30.185 32.224 hybrid contribution -0.614 1.529 -0.639 1.767 sum 9.763 -2.892 29.546 31.251 Atomic orbital electron populations 1.22162 0.95575 1.02606 1.02542 1.21367 0.94563 0.81030 1.03116 1.48390 1.65902 1.13827 1.07378 1.22143 0.99808 0.92966 0.87408 1.22693 0.99990 0.98986 0.94557 1.22519 0.96713 0.88144 0.98578 0.86867 1.60819 1.07670 1.33392 1.25599 1.22998 0.99817 0.94433 0.86633 0.88398 1.22624 1.00937 0.96402 0.95517 1.22045 1.01328 0.84755 0.94264 1.48402 1.68566 1.07113 1.12171 1.20054 0.75941 0.90330 0.80222 1.90724 1.51330 1.20535 1.76064 1.23494 1.04293 1.00243 1.01518 1.85433 1.85567 1.11302 1.01196 1.22860 1.51940 0.93086 1.00333 0.90942 1.25001 0.94878 0.97102 0.96673 1.70026 1.43318 1.22712 1.14233 0.86162 0.78156 0.81759 0.79380 1.20277 1.20768 1.19697 1.22960 0.97582 0.94013 0.89694 1.21905 0.78107 0.88615 0.84801 1.90812 1.52108 1.74712 1.20827 0.91290 0.92453 0.92046 0.89975 0.90405 0.90351 0.90976 0.89555 0.87786 0.83367 0.89561 0.90129 0.91140 0.91184 0.89309 0.89341 0.92211 0.92485 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.12 0.85 6.65 -4.04 -0.03 0.82 16 3 N -0.62 -4.68 2.93 -172.42 -0.51 -5.18 16 4 C 0.10 0.41 7.35 -3.12 -0.02 0.39 16 5 C -0.12 -0.49 6.89 -25.10 -0.17 -0.66 16 6 C 0.05 0.39 3.26 -67.73 -0.22 0.17 16 7 H 0.11 0.85 7.45 -51.93 -0.39 0.46 16 8 N -0.64 -4.81 6.22 -97.39 -0.61 -5.42 16 9 C 0.07 0.69 3.38 -65.45 -0.22 0.47 16 10 H 0.10 0.97 7.45 -51.93 -0.39 0.58 16 11 C -0.12 -0.97 6.64 -24.90 -0.17 -1.13 16 12 C 0.10 1.14 6.48 -3.07 -0.02 1.12 16 13 N -0.62 -10.00 3.32 -170.38 -0.57 -10.57 16 14 C 0.55 11.55 7.87 -10.99 -0.09 11.46 16 15 O -0.51 -13.10 16.12 5.56 0.09 -13.01 16 16 C -0.14 -3.15 5.35 36.01 0.19 -2.96 16 17 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 18 C -0.53 -15.62 9.50 30.94 0.29 -15.32 16 19 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.78 13.22 55.49 0.73 -26.05 16 22 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.08 1.17 5.99 -2.41 -0.01 1.15 16 27 C 0.48 5.02 7.17 -10.86 -0.08 4.94 16 28 O -0.51 -7.93 15.84 5.56 0.09 -7.84 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.33 8.08 -51.93 -0.42 -0.09 16 38 H 0.35 2.69 7.89 -39.29 -0.31 2.38 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.79 8.14 -51.91 -0.42 1.36 16 44 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.06 0.80 7.76 -51.93 -0.40 0.40 16 47 H 0.09 1.62 6.60 -51.93 -0.34 1.27 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -38.22 396.49 -9.99 -48.21 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.70 Total: -0.60 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.26 Total: 1.65 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.94 Total: -47.22 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.22 -9.99 -48.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.981 kcal (2) G-P(sol) polarization free energy of solvation -38.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds