Wall clock time and date at job start Wed Apr 1 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47217 * 2 1 4 4 C 1.46766 * 124.34622 * 269.99983 * 3 2 1 5 5 C 1.54829 * 105.49245 * 197.05561 * 4 3 2 6 6 C 1.54630 * 101.60453 * 334.56605 * 5 4 3 7 7 H 1.09001 * 110.48465 * 143.56866 * 6 5 4 8 8 N 1.46898 * 110.48817 * 266.08305 * 6 5 4 9 9 C 1.46904 * 111.00244 * 203.16391 * 8 6 5 10 10 H 1.08998 * 110.91092 * 328.89536 * 9 8 6 11 11 C 1.55151 * 111.00442 * 204.99775 * 9 8 6 12 12 C 1.54318 * 102.94366 * 206.42060 * 11 9 8 13 13 N 1.47019 * 107.27169 * 22.18982 * 12 11 9 14 14 C 1.34781 * 125.65306 * 181.02409 * 13 12 11 15 15 O 1.21274 * 120.00344 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99423 * 0.02625 * 14 13 12 17 17 S 1.81001 * 109.46896 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07991 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46807 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46906 * 300.00462 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.47431 * 108.70235 * 1.28908 * 13 12 11 27 27 C 1.34414 * 124.35044 * 90.01610 * 3 2 1 28 28 O 1.21283 * 124.94261 * 359.61421 * 27 3 2 29 29 H 1.09003 * 109.46881 * 60.00847 * 1 2 3 30 30 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47536 * 300.00449 * 1 2 3 32 32 H 1.09003 * 109.47204 * 239.99398 * 2 1 3 33 33 H 1.09000 * 109.46743 * 119.99661 * 2 1 3 34 34 H 1.08997 * 110.24166 * 316.03473 * 4 3 2 35 35 H 1.09003 * 110.24494 * 78.03184 * 4 3 2 36 36 H 1.09004 * 111.08037 * 216.48760 * 5 4 3 37 37 H 1.08999 * 111.01339 * 92.61490 * 5 4 3 38 38 H 1.00903 * 110.99582 * 327.11220 * 8 6 5 39 39 H 1.09004 * 110.71715 * 88.05488 * 11 9 8 40 40 H 1.09006 * 110.72308 * 324.78613 * 11 9 8 41 41 H 1.09006 * 109.88336 * 262.77865 * 12 11 9 42 42 H 1.09001 * 110.01290 * 141.68352 * 12 11 9 43 43 H 1.09001 * 109.47454 * 60.00304 * 16 14 13 44 44 H 1.09003 * 109.47322 * 299.99933 * 16 14 13 45 45 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36093 * 94.48076 * 26 13 12 47 47 H 1.09002 * 110.36515 * 216.80212 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 -1.2118 5 6 3.1774 3.3463 -0.7484 6 6 2.7702 3.4751 0.7377 7 1 3.6322 3.7464 1.3473 8 7 1.6991 4.4684 0.8931 9 6 1.6734 5.0055 2.2602 10 1 2.0090 4.2574 2.9785 11 6 0.2601 5.5316 2.6246 12 6 0.5557 6.6057 3.6924 13 7 1.9504 7.0326 3.5077 14 6 2.5983 7.9460 4.2576 15 8 3.7536 8.2221 4.0132 16 6 1.8869 8.6243 5.4000 17 16 3.0141 9.7884 6.2065 18 6 1.9541 10.4184 7.4651 19 1 0.9385 10.0600 7.5452 20 6 2.4244 11.3755 8.3537 21 7 3.6621 11.8127 8.2558 22 14 1.3004 12.0440 9.6876 23 1 2.0369 13.0461 10.4991 24 1 0.1169 12.6863 9.0616 25 1 0.8541 10.9304 10.5628 26 6 2.5210 6.3007 2.3621 27 6 2.2715 2.0962 1.1097 28 8 2.1226 1.6940 2.2442 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8321 1.5529 -1.9384 35 1 1.3638 2.5309 -1.6428 36 1 2.9350 4.2551 -1.2995 37 1 4.2361 3.1051 -0.8433 38 1 1.7924 5.2098 0.2151 39 1 -0.3534 4.7325 3.0408 40 1 -0.2224 5.9759 1.7539 41 1 0.4263 6.1832 4.6889 42 1 -0.1129 7.4564 3.5609 43 1 1.5608 7.8749 6.1213 44 1 1.0196 9.1636 5.0191 45 1 3.9906 12.4818 8.8765 46 1 2.4276 6.8908 1.4505 47 1 3.5662 6.0557 2.5511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:12 Heat of formation + Delta-G solvation = -86.224674 kcal Electronic energy + Delta-G solvation = -27147.684978 eV Core-core repulsion = 23262.477603 eV Total energy + Delta-G solvation = -3885.207376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65812 -40.99070 -38.84743 -37.54706 -36.25664 -34.60261 -33.87912 -31.90938 -30.87069 -29.99712 -28.72580 -27.69963 -26.99253 -24.61399 -24.18502 -22.71805 -21.85120 -20.78499 -20.22752 -19.60677 -18.15063 -18.06655 -17.65064 -17.07473 -16.90140 -16.82242 -16.57256 -15.99682 -15.91923 -15.59476 -15.08980 -14.84028 -14.62348 -14.55385 -14.37448 -14.33997 -14.03074 -13.74996 -13.71672 -13.52548 -13.34363 -13.17819 -12.93602 -12.87501 -12.78078 -12.70471 -12.64471 -12.28639 -12.08859 -11.86402 -11.79090 -11.72288 -11.14291 -11.06175 -10.95528 -10.32062 -9.83940 -9.70863 -9.54085 -8.70471 -8.36020 -6.15251 1.20544 1.41676 1.43305 1.47904 1.50296 1.54373 2.02505 2.08080 2.25900 2.97847 3.02489 3.21715 3.31854 3.39619 3.57934 3.59526 3.86873 3.96198 4.00482 4.12516 4.16568 4.24172 4.27610 4.30469 4.33397 4.41515 4.48935 4.50411 4.58258 4.72576 4.74925 4.77142 4.85000 4.95519 4.96902 5.01362 5.08254 5.16750 5.26398 5.28787 5.39817 5.64648 5.74837 6.10801 6.18027 6.30173 6.33699 7.04285 7.04902 7.17424 8.73073 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028257 B = 0.001896 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.677945 B =14761.164630 C =15193.419248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 N -0.613 5.613 4 C 0.104 3.896 5 C -0.125 4.125 6 C 0.048 3.952 7 H 0.071 0.929 8 N -0.644 5.644 9 C 0.086 3.914 10 H 0.075 0.925 11 C -0.102 4.102 12 C 0.092 3.908 13 N -0.615 5.615 14 C 0.546 3.454 15 O -0.567 6.567 16 C -0.120 4.120 17 S -0.150 6.150 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.278 1.278 24 H -0.260 1.260 25 H -0.263 1.263 26 C 0.082 3.918 27 C 0.518 3.482 28 O -0.583 6.583 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.368 0.632 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.272 0.728 46 H 0.087 0.913 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 -23.212 -25.910 36.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.006 4.006 3 N -0.346 5.346 4 C -0.017 4.017 5 C -0.162 4.162 6 C -0.066 4.066 7 H 0.089 0.911 8 N -0.279 5.279 9 C -0.026 4.026 10 H 0.093 0.907 11 C -0.140 4.140 12 C -0.031 4.031 13 N -0.350 5.350 14 C 0.334 3.666 15 O -0.445 6.445 16 C -0.271 4.271 17 S 0.077 5.923 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.203 1.203 24 H -0.185 1.185 25 H -0.187 1.187 26 C -0.042 4.042 27 C 0.305 3.695 28 O -0.463 6.463 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.191 0.809 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.088 -23.431 -25.518 35.575 hybrid contribution -0.655 0.748 1.610 1.892 sum -8.743 -22.684 -23.908 34.097 Atomic orbital electron populations 1.22079 0.95326 1.02939 1.01627 1.21496 0.94807 0.80705 1.03554 1.48454 1.64361 1.14119 1.07644 1.22366 1.00554 0.92523 0.86272 1.22969 1.01344 1.00666 0.91254 1.22280 0.93519 0.90545 1.00220 0.91142 1.60277 1.46004 1.17711 1.03897 1.22732 0.95770 0.92906 0.91193 0.90688 1.22554 0.95875 0.97019 0.98579 1.22376 0.80956 0.98917 1.00830 1.48314 1.14804 1.40234 1.31681 1.19798 0.85797 0.78602 0.82381 1.90678 1.18724 1.64159 1.70976 1.23303 1.03175 1.02094 0.98557 1.85555 1.20400 1.48644 1.37658 1.23158 1.00592 1.28291 1.17495 0.89920 1.26158 0.97251 0.95654 1.00103 1.70181 1.17067 1.29527 1.37926 0.84985 0.77792 0.78083 0.77016 1.20266 1.18483 1.18745 1.23111 0.98356 0.93352 0.89400 1.21219 0.76013 0.88090 0.84135 1.90684 1.55524 1.76492 1.23570 0.91251 0.90065 0.95091 0.87172 0.92234 0.87865 0.89499 0.86073 0.88116 0.80860 0.89098 0.87883 0.91027 0.89455 0.87850 0.87283 0.91932 0.89450 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.24 71.98 0.74 -0.99 16 2 C 0.12 1.28 6.65 86.38 0.57 1.85 16 3 N -0.61 -8.05 2.93 -817.27 -2.40 -10.44 16 4 C 0.10 0.49 7.36 86.95 0.64 1.13 16 5 C -0.12 -0.59 6.87 31.77 0.22 -0.37 16 6 C 0.05 0.67 3.09 44.91 0.14 0.81 16 7 H 0.07 1.20 7.89 -2.39 -0.02 1.19 16 8 N -0.64 -8.36 6.25 -462.04 -2.89 -11.25 16 9 C 0.09 1.59 3.21 46.38 0.15 1.74 16 10 H 0.07 1.88 7.63 -2.39 -0.02 1.86 16 11 C -0.10 -1.61 6.64 31.78 0.21 -1.40 16 12 C 0.09 1.91 6.48 86.73 0.56 2.48 16 13 N -0.62 -17.97 3.33 -811.35 -2.70 -20.66 16 14 C 0.55 22.06 7.87 87.66 0.69 22.75 16 15 O -0.57 -27.96 16.12 -3.01 -0.05 -28.01 16 16 C -0.12 -5.10 5.35 71.24 0.38 -4.72 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 18 C -0.55 -31.96 9.50 67.96 0.65 -31.31 16 19 H 0.08 4.47 7.80 -2.92 -0.02 4.45 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 22 Si 1.00 44.20 29.55 68.60 2.03 46.22 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 26 C 0.08 1.91 6.50 86.93 0.57 2.47 16 27 C 0.52 10.75 7.59 87.90 0.67 11.42 16 28 O -0.58 -18.21 17.38 -3.04 -0.05 -18.27 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 34 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.12 0.02 7.58 -2.38 -0.02 0.00 16 37 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.37 2.87 7.55 -89.69 -0.68 2.20 16 39 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 44 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 45 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.09 1.67 7.76 -2.39 -0.02 1.66 16 47 H 0.06 1.54 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -87.96 399.85 0.00 -87.96 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.29 Total: 13.56 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 6.65 Total: 7.10 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -7.70 Total: -98.81 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.10 Total: -46.28 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -87.96 0.00 -87.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.738 kcal (2) G-P(sol) polarization free energy of solvation -87.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds