Wall clock time and date at job start Wed Apr 1 2020 00:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00114 * 2 1 4 4 N 1.46510 * 109.46671 * 125.00061 * 3 2 1 5 5 C 1.34773 * 119.99417 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00735 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99734 * 180.02562 * 5 4 3 8 8 H 1.09004 * 109.47596 * 59.99639 * 7 5 4 9 9 C 1.53002 * 109.47268 * 299.99983 * 7 5 4 10 10 N 1.46900 * 109.47533 * 179.97438 * 7 5 4 11 11 C 1.46894 * 111.00362 * 204.99764 * 10 7 5 12 12 H 1.09000 * 110.89215 * 328.88461 * 11 10 7 13 13 C 1.55159 * 111.00689 * 205.00127 * 11 10 7 14 14 C 1.54320 * 102.94349 * 206.42841 * 13 11 10 15 15 N 1.47018 * 107.27210 * 22.19183 * 14 13 11 16 16 C 1.34784 * 125.64722 * 181.02498 * 15 14 13 17 17 O 1.21283 * 119.99667 * 180.02562 * 16 15 14 18 18 C 1.50693 * 119.99987 * 0.02568 * 16 15 14 19 19 S 1.81005 * 109.47250 * 180.02562 * 18 16 15 20 20 C 1.76191 * 100.00092 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00297 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00144 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99514 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00351 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46756 * 90.00181 * 24 22 20 26 26 H 1.48501 * 109.47199 * 209.99799 * 24 22 20 27 27 H 1.48492 * 109.47323 * 330.00208 * 24 22 20 28 28 C 1.47421 * 108.70379 * 1.28563 * 15 14 13 29 29 H 1.07997 * 120.00475 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99533 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99768 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47053 * 5.00449 * 3 2 1 33 33 H 1.08994 * 109.47182 * 244.99954 * 3 2 1 34 34 H 0.96994 * 120.00145 * 359.97438 * 4 3 2 35 35 H 1.09000 * 109.47027 * 59.99624 * 9 7 5 36 36 H 1.08995 * 109.47262 * 180.02562 * 9 7 5 37 37 H 1.09007 * 109.46657 * 299.99791 * 9 7 5 38 38 H 1.00898 * 111.00032 * 328.95957 * 10 7 5 39 39 H 1.08996 * 110.71852 * 88.06342 * 13 11 10 40 40 H 1.08999 * 110.71607 * 324.79233 * 13 11 10 41 41 H 1.09010 * 109.88205 * 262.77471 * 14 13 11 42 42 H 1.09002 * 109.88208 * 141.61136 * 14 13 11 43 43 H 1.09002 * 109.47106 * 299.99491 * 18 16 15 44 44 H 1.09003 * 109.47551 * 59.99749 * 18 16 15 45 45 H 0.97000 * 119.99618 * 180.02562 * 23 22 20 46 46 H 1.09005 * 110.36058 * 94.48410 * 28 15 14 47 47 H 1.08997 * 110.36930 * 216.80538 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3317 1.1315 5 6 3.7783 2.4088 1.3335 6 8 3.7146 3.3558 0.5785 7 6 4.7357 2.4361 2.4970 8 1 5.4409 1.6098 2.4069 9 6 3.9533 2.2982 3.8046 10 7 5.4702 3.7083 2.4972 11 6 6.7621 3.5702 3.1825 12 1 6.7037 2.8249 3.9757 13 6 7.2462 4.9360 3.7373 14 6 8.7801 4.7706 3.7728 15 7 9.1267 3.7072 2.8186 16 6 10.3697 3.2490 2.5704 17 8 10.5390 2.3644 1.7582 18 6 11.5492 3.8360 3.3021 19 16 13.0677 3.0179 2.7532 20 6 14.2502 3.8743 3.7395 21 1 13.9266 4.6464 4.4218 22 6 15.5977 3.5573 3.6389 23 7 15.9923 2.6173 2.8062 24 14 16.8515 4.4656 4.6840 25 1 17.0342 3.7494 5.9720 26 1 18.1480 4.5246 3.9622 27 1 16.3692 5.8449 4.9487 28 6 7.8902 3.2293 2.1736 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.0446 0.5746 1.7356 35 1 3.4086 1.3541 3.8043 36 1 4.6456 2.3184 4.6462 37 1 3.2481 3.1245 3.8949 38 1 5.5943 4.0543 1.5576 39 1 6.8533 5.1061 4.7396 40 1 6.9612 5.7472 3.0674 41 1 9.0993 4.4870 4.7758 42 1 9.2605 5.7037 3.4786 43 1 11.6145 4.9030 3.0892 44 1 11.4226 3.6865 4.3744 45 1 16.9340 2.3955 2.7361 46 1 7.7287 3.7507 1.2300 47 1 7.9394 2.1529 2.0097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181123226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:11 Heat of formation + Delta-G solvation = -73.295248 kcal Electronic energy + Delta-G solvation = -26459.603007 eV Core-core repulsion = 22574.956294 eV Total energy + Delta-G solvation = -3884.646714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35195 -40.84587 -38.87515 -36.95859 -36.26305 -34.59458 -33.95749 -32.75278 -30.89079 -30.64933 -28.17668 -27.59514 -27.40300 -24.90497 -23.77992 -21.82661 -21.54788 -20.77125 -20.63630 -19.60838 -18.49591 -18.04915 -17.81739 -17.20792 -16.92087 -16.88885 -16.55788 -16.00727 -15.96024 -15.61657 -15.53717 -14.95329 -14.61990 -14.53841 -14.30329 -14.25428 -14.01910 -13.78422 -13.48723 -13.42303 -13.25605 -13.17108 -13.10048 -12.89022 -12.76495 -12.62584 -12.44950 -12.27871 -12.06817 -11.75691 -11.68912 -11.14725 -11.05889 -11.04237 -10.52116 -10.30178 -10.10237 -9.80721 -9.53721 -8.69728 -8.35399 -6.14567 1.14601 1.22187 1.42774 1.44023 1.50983 1.52121 1.56000 2.01231 2.25154 2.26748 2.98884 3.00045 3.24484 3.48567 3.64699 3.66480 3.84418 3.88043 3.98254 4.12198 4.13640 4.18925 4.20375 4.30769 4.34908 4.43095 4.53881 4.59018 4.65234 4.72094 4.80743 4.85503 4.92966 4.98978 5.08887 5.19539 5.28299 5.29637 5.33631 5.40983 5.63497 5.75299 5.87826 6.16650 6.19048 6.33594 6.47872 7.05442 7.06057 7.13917 8.73987 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.001721 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.976921 B =16265.529759 C =16902.908111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.183 4.183 3 C 0.145 3.855 4 N -0.712 5.712 5 C 0.510 3.490 6 O -0.575 6.575 7 C 0.063 3.937 8 H 0.085 0.915 9 C -0.131 4.131 10 N -0.657 5.657 11 C 0.089 3.911 12 H 0.111 0.889 13 C -0.105 4.105 14 C 0.090 3.910 15 N -0.614 5.614 16 C 0.545 3.455 17 O -0.570 6.570 18 C -0.119 4.119 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.258 1.258 28 C 0.075 3.925 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.417 0.583 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.350 0.650 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.061 0.939 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.302 -1.078 4.099 33.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 C 0.022 3.978 4 N -0.365 5.365 5 C 0.296 3.704 6 O -0.454 6.454 7 C -0.049 4.049 8 H 0.103 0.897 9 C -0.189 4.189 10 N -0.291 5.291 11 C -0.022 4.022 12 H 0.129 0.871 13 C -0.143 4.143 14 C -0.032 4.032 15 N -0.349 5.349 16 C 0.333 3.667 17 O -0.449 6.449 18 C -0.270 4.270 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.050 4.050 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.172 0.828 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -33.264 -1.576 2.809 33.420 hybrid contribution 1.438 0.413 0.329 1.532 sum -31.826 -1.163 3.138 32.001 Atomic orbital electron populations 1.24178 0.95630 1.03270 0.96512 1.22934 0.96402 0.97353 1.03467 1.20414 0.91565 0.96682 0.89149 1.45881 1.40126 1.19683 1.30830 1.21022 0.81370 0.82050 0.85911 1.90701 1.69283 1.36836 1.48613 1.21661 0.95283 0.93249 0.94756 0.89721 1.21770 1.00210 1.02774 0.94120 1.60624 1.17761 1.25860 1.24810 1.22878 0.84986 0.99111 0.95211 0.87070 1.22602 0.90897 0.96669 1.04123 1.22431 0.97525 0.90126 0.93112 1.48324 1.04721 1.39146 1.42672 1.19850 0.83334 0.81680 0.81825 1.90683 1.85085 1.32446 1.36647 1.23294 0.95649 1.04200 1.03832 1.85595 0.97315 1.52200 1.57445 1.23194 0.94038 1.24625 1.27542 0.89826 1.26146 1.00014 0.96011 0.96913 1.70192 1.17257 1.30865 1.36496 0.84930 0.76461 0.78712 0.77731 1.19154 1.20322 1.18153 1.23165 0.84770 0.99792 0.97234 0.86282 0.88155 0.85432 0.91824 0.91977 0.74593 0.89904 0.90380 0.92245 0.82769 0.86921 0.89815 0.89577 0.90457 0.87626 0.87185 0.91970 0.92093 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 14.32 67.78 0.97 0.07 16 2 C -0.18 -1.30 9.63 25.64 0.25 -1.05 16 3 C 0.15 1.73 6.11 85.63 0.52 2.25 16 4 N -0.71 -7.99 5.44 -466.78 -2.54 -10.53 16 5 C 0.51 8.72 7.18 87.66 0.63 9.35 16 6 O -0.58 -14.90 15.64 -3.02 -0.05 -14.95 16 7 C 0.06 0.82 2.89 44.17 0.13 0.95 16 8 H 0.09 0.97 7.86 -2.38 -0.02 0.95 16 9 C -0.13 -1.08 9.30 71.98 0.67 -0.41 16 10 N -0.66 -10.52 6.10 -465.82 -2.84 -13.36 16 11 C 0.09 1.39 3.13 46.39 0.15 1.53 16 12 H 0.11 1.46 7.25 -2.39 -0.02 1.45 16 13 C -0.10 -1.42 6.64 31.78 0.21 -1.21 16 14 C 0.09 1.70 6.48 86.73 0.56 2.27 16 15 N -0.61 -17.38 3.32 -811.36 -2.70 -20.08 16 16 C 0.54 21.63 7.87 87.65 0.69 22.32 16 17 O -0.57 -28.05 16.12 -3.04 -0.05 -28.10 16 18 C -0.12 -4.90 5.35 71.23 0.38 -4.52 16 19 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 20 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 24 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 28 C 0.08 1.80 6.50 86.93 0.57 2.36 16 29 H 0.12 0.34 8.06 -2.91 -0.02 0.32 16 30 H 0.10 0.57 7.84 -2.91 -0.02 0.55 16 31 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 32 H 0.06 0.88 7.79 -2.39 -0.02 0.86 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.42 2.20 7.88 -92.71 -0.73 1.47 16 35 H 0.08 0.32 7.56 -2.39 -0.02 0.30 16 36 H 0.08 0.56 7.53 -2.39 -0.02 0.54 16 37 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.35 7.02 6.90 -89.70 -0.62 6.40 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 44 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.06 1.53 7.76 -2.38 -0.02 1.51 16 47 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -83.39 405.48 -0.56 -83.95 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.38 Total: 18.95 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 6.83 Total: 4.36 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -7.79 Total: -100.06 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.10 Total: -43.05 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -83.39 -0.56 -83.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181123226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.656 kcal (2) G-P(sol) polarization free energy of solvation -83.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds