Wall clock time and date at job start Wed Apr 1 2020 00:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99646 * 2 1 4 4 N 1.46495 * 109.46956 * 125.00039 * 3 2 1 5 5 C 1.34782 * 119.99738 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00076 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99979 * 179.97438 * 5 4 3 8 8 H 1.08993 * 109.46981 * 299.99889 * 7 5 4 9 9 C 1.52999 * 109.46831 * 59.99484 * 7 5 4 10 10 N 1.46900 * 109.46868 * 179.97438 * 7 5 4 11 11 C 1.46905 * 110.99475 * 154.99737 * 10 7 5 12 12 H 1.08996 * 110.78155 * 328.24512 * 11 10 7 13 13 C 1.55157 * 110.71914 * 204.99726 * 11 10 7 14 14 C 1.54901 * 101.58260 * 206.13854 * 13 11 10 15 15 N 1.47426 * 104.83400 * 37.01041 * 14 13 11 16 16 C 1.34773 * 125.64953 * 155.90492 * 15 14 13 17 17 O 1.21287 * 120.00177 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.00009 * 359.97438 * 16 15 14 19 19 S 1.81005 * 109.47024 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99692 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00401 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99661 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00362 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46912 * 89.99769 * 24 22 20 26 26 H 1.48497 * 109.47118 * 209.99929 * 24 22 20 27 27 H 1.48502 * 109.46869 * 329.99855 * 24 22 20 28 28 C 1.47019 * 108.70376 * 335.87327 * 15 14 13 29 29 H 1.08005 * 119.99951 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00477 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00477 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46806 * 4.99699 * 3 2 1 33 33 H 1.09001 * 109.46621 * 244.99823 * 3 2 1 34 34 H 0.96996 * 120.00430 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46998 * 179.97438 * 9 7 5 36 36 H 1.08998 * 109.47461 * 299.99780 * 9 7 5 37 37 H 1.09005 * 109.47251 * 60.00638 * 9 7 5 38 38 H 1.00900 * 110.99978 * 31.05122 * 10 7 5 39 39 H 1.09002 * 111.00633 * 324.21751 * 13 11 10 40 40 H 1.09001 * 110.99990 * 88.06307 * 13 11 10 41 41 H 1.09004 * 110.36831 * 155.84850 * 14 13 11 42 42 H 1.08999 * 110.37045 * 278.17261 * 14 13 11 43 43 H 1.08989 * 109.47089 * 299.99628 * 18 16 15 44 44 H 1.09000 * 109.46909 * 60.00079 * 18 16 15 45 45 H 0.96998 * 120.00132 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88042 * 241.64152 * 28 15 14 47 47 H 1.08996 * 109.88551 * 120.47294 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 3.7781 2.4092 1.3334 6 8 3.7142 3.3561 0.5783 7 6 4.7347 2.4371 2.4976 8 1 4.1766 2.3394 3.4288 9 6 5.7245 1.2772 2.3722 10 7 5.4691 3.7093 2.4975 11 6 5.9380 4.0465 3.8483 12 1 5.2461 3.6719 4.6026 13 6 6.1334 5.5787 3.9949 14 6 7.2061 5.6501 5.1102 15 7 8.1015 4.5090 4.8463 16 6 9.3878 4.4132 5.2368 17 8 10.0325 3.4230 4.9633 18 6 10.0252 5.5365 6.0135 19 16 11.7442 5.1114 6.3883 20 6 12.2302 6.5551 7.2737 21 1 11.5226 7.3556 7.4316 22 6 13.5226 6.6637 7.7683 23 7 14.3849 5.6879 7.5763 24 14 14.0377 8.1940 8.7076 25 1 13.7659 8.0014 10.1547 26 1 15.4889 8.4346 8.5043 27 1 13.2678 9.3625 8.2105 28 6 7.3585 3.4925 4.0872 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 3.0445 0.5749 1.7355 35 1 6.4166 1.2976 3.2140 36 1 5.1798 0.3331 2.3721 37 1 6.2826 1.3749 1.4410 38 1 4.9045 4.4528 2.1147 39 1 6.5041 6.0159 3.0678 40 1 5.2088 6.0620 4.3106 41 1 7.7579 6.5880 5.0463 42 1 6.7412 5.5485 6.0908 43 1 9.9977 6.4500 5.4197 44 1 9.4784 5.6911 6.9436 45 1 15.2881 5.7640 7.9216 46 1 7.3040 2.5676 4.6612 47 1 7.8507 3.3099 3.1319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181123232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:15 Heat of formation + Delta-G solvation = -43.193947 kcal Electronic energy + Delta-G solvation = -26435.306883 eV Core-core repulsion = 22551.965460 eV Total energy + Delta-G solvation = -3883.341423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54623 -39.69877 -37.69260 -36.39038 -35.38257 -33.44049 -32.40908 -31.77502 -29.71505 -29.52082 -27.45848 -26.86746 -25.45661 -23.81865 -23.01341 -21.10394 -20.96191 -20.18769 -19.31657 -17.89223 -17.50236 -17.03427 -16.58338 -16.50793 -16.07726 -15.80298 -15.05907 -14.84375 -14.78218 -14.65039 -14.41492 -13.88479 -13.77045 -13.69949 -13.40044 -13.12040 -12.91061 -12.70856 -12.55402 -12.47038 -12.25160 -12.19312 -11.80455 -11.72737 -11.69317 -11.37868 -11.05312 -11.01241 -10.99913 -10.74485 -10.49539 -10.03511 -9.79350 -9.56153 -9.37676 -9.04585 -8.91917 -8.44476 -8.20415 -6.47600 -6.19442 -3.89889 1.44842 2.16575 2.72600 2.94595 3.11977 3.23833 3.27406 3.31879 3.60117 3.79243 4.12756 4.19190 4.23124 4.28078 4.42787 4.46283 4.64353 4.70710 4.85841 4.95732 5.01844 5.11904 5.15592 5.16268 5.19275 5.23750 5.29342 5.45890 5.49150 5.55163 5.63344 5.67147 5.78485 5.83071 5.89978 5.91596 5.94252 5.97004 6.05975 6.16855 6.47515 6.58100 6.92308 7.04326 7.61546 7.71694 7.71976 8.37331 8.61306 9.25755 10.88004 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040265 B = 0.001631 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.225041 B =17159.820997 C =17614.106966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.514 3.486 6 O -0.530 6.530 7 C 0.068 3.932 8 H 0.073 0.927 9 C -0.142 4.142 10 N -0.661 5.661 11 C 0.075 3.925 12 H 0.065 0.935 13 C -0.136 4.136 14 C 0.103 3.897 15 N -0.626 5.626 16 C 0.548 3.452 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.119 3.881 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.360 0.640 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.062 0.938 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.191 -8.845 -11.461 33.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.300 3.700 6 O -0.406 6.406 7 C -0.046 4.046 8 H 0.090 0.910 9 C -0.200 4.200 10 N -0.297 5.297 11 C -0.036 4.036 12 H 0.083 0.917 13 C -0.175 4.175 14 C -0.020 4.020 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.389 6.389 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.005 4.005 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.184 0.816 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.415 -9.968 -12.580 32.634 hybrid contribution -1.318 1.948 1.606 2.848 sum -29.733 -8.019 -10.974 32.692 Atomic orbital electron populations 1.24006 0.95786 1.02532 0.97880 1.23007 0.96256 0.98102 1.02301 1.20424 0.91767 0.95620 0.89891 1.45954 1.40978 1.20126 1.30933 1.20728 0.80389 0.82279 0.86627 1.90716 1.67608 1.35416 1.46815 1.21587 0.93647 0.93627 0.95692 0.90966 1.21859 0.99015 0.94711 1.04458 1.60314 1.43828 1.04431 1.21142 1.22662 0.96028 0.95656 0.89235 0.91720 1.23010 0.99322 0.94928 1.00206 1.22233 0.91192 0.90710 0.97906 1.48459 1.10980 1.19740 1.57198 1.20015 0.79187 0.88299 0.78832 1.90708 1.60978 1.32171 1.55083 1.23505 1.05291 0.99247 1.01649 1.85403 0.99448 1.27058 1.71494 1.22863 1.00148 1.04550 1.40764 0.90946 1.24984 0.95389 0.97266 0.95889 1.70018 1.05228 1.31533 1.43502 0.86174 0.77865 0.81753 0.79743 1.20290 1.20747 1.19695 1.21932 0.90557 0.91052 0.96957 0.87763 0.88148 0.86543 0.91033 0.90459 0.76251 0.90744 0.92142 0.91052 0.81635 0.89277 0.89854 0.89989 0.91326 0.89293 0.89349 0.92197 0.91985 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 14.32 29.02 0.42 -0.11 16 2 C -0.18 -0.65 9.63 -36.02 -0.35 -1.00 16 3 C 0.15 0.81 6.11 -5.19 -0.03 0.78 16 4 N -0.73 -4.08 5.44 -61.47 -0.33 -4.41 16 5 C 0.51 4.33 7.18 -10.98 -0.08 4.25 16 6 O -0.53 -6.48 15.64 5.56 0.09 -6.40 16 7 C 0.07 0.49 3.03 -68.86 -0.21 0.28 16 8 H 0.07 0.40 7.44 -51.93 -0.39 0.02 16 9 C -0.14 -0.99 9.15 37.16 0.34 -0.65 16 10 N -0.66 -5.98 6.02 -99.03 -0.60 -6.58 16 11 C 0.07 0.66 3.25 -65.87 -0.21 0.45 16 12 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 13 C -0.14 -1.14 6.47 -24.59 -0.16 -1.30 16 14 C 0.10 1.11 6.69 -2.53 -0.02 1.10 16 15 N -0.63 -9.31 3.33 -170.52 -0.57 -9.88 16 16 C 0.55 10.91 7.87 -10.98 -0.09 10.82 16 17 O -0.52 -12.29 16.19 5.55 0.09 -12.21 16 18 C -0.15 -3.06 5.16 36.01 0.19 -2.88 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 24 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.12 1.49 5.29 -3.06 -0.02 1.47 16 29 H 0.10 0.23 8.06 -52.48 -0.42 -0.20 16 30 H 0.10 0.30 7.84 -52.49 -0.41 -0.11 16 31 H 0.12 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 1.28 7.88 -40.82 -0.32 0.96 16 35 H 0.07 0.59 6.28 -51.93 -0.33 0.26 16 36 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.36 3.41 7.14 -39.29 -0.28 3.13 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.73 7.85 -51.92 -0.41 1.33 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.06 0.78 7.53 -51.93 -0.39 0.39 16 47 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 LS Contribution 401.77 15.07 6.05 6.05 Total: -1.00 -36.93 401.77 -9.23 -46.16 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.44 Total: 0.12 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.02 Total: 0.15 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.76 Total: -46.48 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.93 -9.23 -46.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181123232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.965 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds