Wall clock time and date at job start Wed Apr 1 2020 00:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99646 * 2 1 4 4 N 1.46495 * 109.46956 * 125.00039 * 3 2 1 5 5 C 1.34782 * 119.99738 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00076 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99979 * 179.97438 * 5 4 3 8 8 H 1.08993 * 109.46981 * 299.99889 * 7 5 4 9 9 C 1.52999 * 109.46831 * 59.99484 * 7 5 4 10 10 N 1.46900 * 109.46868 * 179.97438 * 7 5 4 11 11 C 1.46905 * 110.99475 * 154.99737 * 10 7 5 12 12 H 1.08996 * 110.78155 * 328.24512 * 11 10 7 13 13 C 1.55157 * 110.71914 * 204.99726 * 11 10 7 14 14 C 1.54901 * 101.58260 * 206.13854 * 13 11 10 15 15 N 1.47426 * 104.83400 * 37.01041 * 14 13 11 16 16 C 1.34773 * 125.64953 * 155.90492 * 15 14 13 17 17 O 1.21287 * 120.00177 * 179.97438 * 16 15 14 18 18 C 1.50706 * 120.00009 * 359.97438 * 16 15 14 19 19 S 1.81005 * 109.47024 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99692 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00401 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99661 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00362 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99911 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46912 * 89.99769 * 24 22 20 26 26 H 1.48497 * 109.47118 * 209.99929 * 24 22 20 27 27 H 1.48502 * 109.46869 * 329.99855 * 24 22 20 28 28 C 1.47019 * 108.70376 * 335.87327 * 15 14 13 29 29 H 1.08005 * 119.99951 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00477 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00477 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46806 * 4.99699 * 3 2 1 33 33 H 1.09001 * 109.46621 * 244.99823 * 3 2 1 34 34 H 0.96996 * 120.00430 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46998 * 179.97438 * 9 7 5 36 36 H 1.08998 * 109.47461 * 299.99780 * 9 7 5 37 37 H 1.09005 * 109.47251 * 60.00638 * 9 7 5 38 38 H 1.00900 * 110.99978 * 31.05122 * 10 7 5 39 39 H 1.09002 * 111.00633 * 324.21751 * 13 11 10 40 40 H 1.09001 * 110.99990 * 88.06307 * 13 11 10 41 41 H 1.09004 * 110.36831 * 155.84850 * 14 13 11 42 42 H 1.08999 * 110.37045 * 278.17261 * 14 13 11 43 43 H 1.08989 * 109.47089 * 299.99628 * 18 16 15 44 44 H 1.09000 * 109.46909 * 60.00079 * 18 16 15 45 45 H 0.96998 * 120.00132 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88042 * 241.64152 * 28 15 14 47 47 H 1.08996 * 109.88551 * 120.47294 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1314 5 6 3.7781 2.4092 1.3334 6 8 3.7142 3.3561 0.5783 7 6 4.7347 2.4371 2.4976 8 1 4.1766 2.3394 3.4288 9 6 5.7245 1.2772 2.3722 10 7 5.4691 3.7093 2.4975 11 6 5.9380 4.0465 3.8483 12 1 5.2461 3.6719 4.6026 13 6 6.1334 5.5787 3.9949 14 6 7.2061 5.6501 5.1102 15 7 8.1015 4.5090 4.8463 16 6 9.3878 4.4132 5.2368 17 8 10.0325 3.4230 4.9633 18 6 10.0252 5.5365 6.0135 19 16 11.7442 5.1114 6.3883 20 6 12.2302 6.5551 7.2737 21 1 11.5226 7.3556 7.4316 22 6 13.5226 6.6637 7.7683 23 7 14.3849 5.6879 7.5763 24 14 14.0377 8.1940 8.7076 25 1 13.7659 8.0014 10.1547 26 1 15.4889 8.4346 8.5043 27 1 13.2678 9.3625 8.2105 28 6 7.3585 3.4925 4.0872 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1317 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 3.0445 0.5749 1.7355 35 1 6.4166 1.2976 3.2140 36 1 5.1798 0.3331 2.3721 37 1 6.2826 1.3749 1.4410 38 1 4.9045 4.4528 2.1147 39 1 6.5041 6.0159 3.0678 40 1 5.2088 6.0620 4.3106 41 1 7.7579 6.5880 5.0463 42 1 6.7412 5.5485 6.0908 43 1 9.9977 6.4500 5.4197 44 1 9.4784 5.6911 6.9436 45 1 15.2881 5.7640 7.9216 46 1 7.3040 2.5676 4.6612 47 1 7.8507 3.3099 3.1319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181123232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:14 Heat of formation + Delta-G solvation = -71.485109 kcal Electronic energy + Delta-G solvation = -26436.533680 eV Core-core repulsion = 22551.965460 eV Total energy + Delta-G solvation = -3884.568220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31521 -40.81256 -38.84926 -36.94364 -36.24513 -34.58426 -33.94604 -32.72231 -31.06679 -30.32638 -28.54704 -27.62549 -27.34468 -24.63655 -23.85214 -21.80677 -21.53946 -20.74615 -20.58228 -19.61789 -18.36949 -17.94156 -17.71325 -17.42344 -16.88056 -16.70350 -16.54710 -16.31048 -16.03461 -15.62776 -15.37310 -15.00643 -14.67946 -14.51518 -14.27756 -14.19607 -14.06944 -13.74274 -13.50330 -13.28856 -13.18185 -13.12676 -13.05973 -12.88362 -12.82575 -12.61381 -12.50387 -12.10641 -12.04417 -11.79663 -11.70834 -11.13828 -11.04095 -10.95848 -10.52197 -10.28004 -10.08022 -9.69916 -9.57339 -8.67903 -8.34170 -6.13111 1.15729 1.24152 1.43267 1.45234 1.52697 1.56632 1.57025 2.05450 2.26879 2.28163 2.99988 3.06421 3.22887 3.45965 3.59287 3.69075 3.85709 3.91249 4.05651 4.12232 4.16183 4.18834 4.23940 4.32560 4.42633 4.44627 4.55430 4.64917 4.67652 4.73384 4.80305 4.86637 4.91954 4.94472 4.99775 5.13532 5.28507 5.32233 5.37915 5.41938 5.64528 5.76289 5.92481 6.20108 6.27318 6.39841 6.50712 7.06796 7.11987 7.15613 8.75216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040265 B = 0.001631 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.225041 B =17159.820997 C =17614.106966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C 0.146 3.854 4 N -0.712 5.712 5 C 0.513 3.487 6 O -0.574 6.574 7 C 0.071 3.929 8 H 0.101 0.899 9 C -0.140 4.140 10 N -0.676 5.676 11 C 0.089 3.911 12 H 0.092 0.908 13 C -0.125 4.125 14 C 0.092 3.908 15 N -0.617 5.617 16 C 0.544 3.456 17 O -0.569 6.569 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.258 1.258 28 C 0.115 3.885 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.417 0.583 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.360 0.640 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.062 0.938 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.197 -7.853 -10.407 35.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.365 5.365 5 C 0.299 3.701 6 O -0.453 6.453 7 C -0.042 4.042 8 H 0.118 0.882 9 C -0.198 4.198 10 N -0.313 5.313 11 C -0.022 4.022 12 H 0.110 0.890 13 C -0.164 4.164 14 C -0.030 4.030 15 N -0.352 5.352 16 C 0.332 3.668 17 O -0.447 6.447 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.008 4.008 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.184 0.816 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -31.503 -8.992 -11.528 34.731 hybrid contribution -0.543 1.567 1.184 2.038 sum -32.046 -7.424 -10.344 34.483 Atomic orbital electron populations 1.24173 0.95695 1.03231 0.96683 1.22945 0.96354 0.97440 1.03309 1.20412 0.91517 0.96621 0.89214 1.45878 1.39961 1.19785 1.30877 1.20948 0.80506 0.82192 0.86420 1.90697 1.69093 1.37155 1.48362 1.21636 0.93461 0.92728 0.96340 0.88180 1.21850 0.98966 0.96164 1.02812 1.60201 1.44591 1.05160 1.21342 1.22558 0.93835 0.95843 0.89943 0.89036 1.23003 0.99837 0.94607 0.98913 1.22634 0.91116 0.89093 1.00134 1.48415 1.09751 1.21546 1.55489 1.19810 0.80697 0.87303 0.78965 1.90683 1.62804 1.33851 1.57405 1.23296 1.00436 1.00159 1.03074 1.85604 1.05880 1.28826 1.72195 1.23195 1.00872 1.04534 1.40805 0.89863 1.26136 0.95241 1.00951 0.96726 1.70186 1.05740 1.34068 1.44801 0.84940 0.77512 0.77197 0.78239 1.19181 1.20306 1.18165 1.22103 0.92415 0.90903 0.95382 0.86371 0.88193 0.85346 0.91815 0.91887 0.74588 0.91689 0.89337 0.93255 0.81624 0.90243 0.86364 0.89754 0.88910 0.87666 0.87305 0.91975 0.92006 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 14.32 67.78 0.97 0.23 16 2 C -0.18 -1.04 9.63 25.65 0.25 -0.79 16 3 C 0.15 1.51 6.11 85.64 0.52 2.03 16 4 N -0.71 -6.93 5.44 -466.78 -2.54 -9.47 16 5 C 0.51 8.06 7.18 87.66 0.63 8.69 16 6 O -0.57 -13.97 15.64 -3.01 -0.05 -14.01 16 7 C 0.07 0.90 3.03 44.17 0.13 1.03 16 8 H 0.10 0.75 7.44 -2.39 -0.02 0.73 16 9 C -0.14 -1.79 9.15 71.98 0.66 -1.13 16 10 N -0.68 -11.23 6.02 -467.22 -2.81 -14.05 16 11 C 0.09 1.35 3.25 46.10 0.15 1.50 16 12 H 0.09 0.98 7.45 -2.39 -0.02 0.96 16 13 C -0.13 -1.71 6.47 31.98 0.21 -1.50 16 14 C 0.09 1.72 6.69 86.85 0.58 2.30 16 15 N -0.62 -17.74 3.33 -811.79 -2.70 -20.44 16 16 C 0.54 21.86 7.87 87.66 0.69 22.55 16 17 O -0.57 -28.28 16.19 -3.05 -0.05 -28.33 16 18 C -0.12 -4.94 5.16 71.24 0.37 -4.57 16 19 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 20 C -0.55 -31.60 9.50 67.95 0.65 -30.95 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 24 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 28 C 0.12 2.81 5.29 86.73 0.46 3.27 16 29 H 0.12 0.23 8.06 -2.91 -0.02 0.21 16 30 H 0.10 0.46 7.84 -2.91 -0.02 0.44 16 31 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.42 1.64 7.88 -92.71 -0.73 0.91 16 35 H 0.06 0.97 6.28 -2.39 -0.01 0.96 16 36 H 0.09 0.60 7.56 -2.39 -0.02 0.58 16 37 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.36 6.28 7.14 -89.69 -0.64 5.64 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 1.57 7.48 -2.38 -0.02 1.55 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.11 4.01 7.85 -2.40 -0.02 3.99 16 44 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.06 1.52 7.53 -2.39 -0.02 1.50 16 47 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 Total: -1.00 -84.81 401.77 -0.66 -85.47 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.39 Total: 17.17 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 6.73 Total: 3.94 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -7.77 Total: -100.24 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.10 Total: -42.35 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -84.81 -0.66 -85.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181123232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.985 kcal (2) G-P(sol) polarization free energy of solvation -84.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds