Wall clock time and date at job start Wed Apr 1 2020 00:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 N 1.46902 * 109.47236 * 240.00061 * 2 1 3 5 5 C 1.46899 * 110.99498 * 84.99488 * 4 2 1 6 6 H 1.08994 * 110.64810 * 328.14454 * 5 4 2 7 7 C 1.55159 * 110.71673 * 204.99686 * 5 4 2 8 8 C 1.54914 * 101.58251 * 206.13827 * 7 5 4 9 9 N 1.47427 * 104.82699 * 37.01617 * 8 7 5 10 10 C 1.34780 * 125.64326 * 155.90971 * 9 8 7 11 11 O 1.21284 * 119.99641 * 179.97438 * 10 9 8 12 12 C 1.50701 * 120.00330 * 359.96627 * 10 9 8 13 13 S 1.80996 * 109.47220 * 180.02562 * 12 10 9 14 14 C 1.76192 * 100.00266 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99786 * 0.02562 * 14 13 12 16 16 C 1.38797 * 120.00493 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00217 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99819 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46856 * 89.99796 * 18 16 14 20 20 H 1.48494 * 109.47341 * 210.00025 * 18 16 14 21 21 H 1.48496 * 109.46904 * 330.00360 * 18 16 14 22 22 C 1.47012 * 108.70536 * 335.86582 * 9 8 7 23 23 C 1.50707 * 109.47193 * 119.99964 * 2 1 3 24 24 O 1.21279 * 119.99475 * 119.99696 * 23 2 1 25 25 N 1.34777 * 119.99928 * 300.00412 * 23 2 1 26 26 C 1.46497 * 119.99862 * 180.02562 * 25 23 2 27 27 C 1.53000 * 117.50070 * 204.99853 * 26 25 23 28 28 C 1.52997 * 117.50064 * 136.37107 * 26 25 23 29 29 H 1.09003 * 109.46991 * 299.99457 * 1 2 3 30 30 H 1.08997 * 109.47523 * 59.99675 * 1 2 3 31 31 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.00894 * 111.00249 * 208.95381 * 4 2 1 33 33 H 1.09000 * 111.00926 * 324.21782 * 7 5 4 34 34 H 1.09005 * 111.00107 * 88.06967 * 7 5 4 35 35 H 1.09000 * 110.36415 * 155.85156 * 8 7 5 36 36 H 1.08994 * 110.36789 * 278.17258 * 8 7 5 37 37 H 1.08996 * 109.46844 * 300.00462 * 12 10 9 38 38 H 1.09003 * 109.46392 * 60.00343 * 12 10 9 39 39 H 0.97005 * 119.99863 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.88739 * 241.64205 * 22 9 8 41 41 H 1.09006 * 109.88400 * 120.47797 * 22 9 8 42 42 H 0.96997 * 119.99682 * 359.97438 * 25 23 2 43 43 H 1.09002 * 115.55899 * 350.68275 * 26 25 23 44 44 H 1.08990 * 117.49990 * 145.01695 * 27 26 25 45 45 H 1.09004 * 117.49237 * 359.97438 * 27 26 25 46 46 H 1.08999 * 117.49685 * 0.02562 * 28 26 25 47 47 H 1.08997 * 117.50044 * 214.97835 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2227 -2.3468 6 1 1.2980 0.9766 -2.2804 7 6 1.9779 -0.5621 -3.6812 8 6 2.7191 0.3848 -4.6578 9 7 3.8291 0.9479 -3.8678 10 6 4.9790 1.4410 -4.3691 11 8 5.8267 1.8815 -3.6219 12 6 5.2114 1.4449 -5.8581 13 16 6.8339 2.1641 -6.2136 14 6 6.8418 2.0474 -7.9716 15 1 5.9934 1.6237 -8.4885 16 6 7.9383 2.4999 -8.6923 17 7 7.9439 2.4132 -10.0057 18 14 9.4054 3.2334 -7.7984 19 1 10.3759 2.1574 -7.4740 20 1 10.0594 4.2446 -8.6672 21 1 8.9469 3.8813 -6.5433 22 6 3.4737 0.8836 -2.4427 23 6 2.0324 -0.7104 1.2305 24 8 2.7296 -1.6965 1.1191 25 7 1.7067 -0.2500 2.4546 26 6 2.1955 -0.9403 3.6508 27 6 1.3831 -0.7847 4.9378 28 6 2.7323 -0.0775 4.7946 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1205 -1.0288 33 1 2.4851 -1.5243 -3.6094 34 1 0.9370 -0.6921 -3.9776 35 1 3.1055 -0.1753 -5.5093 36 1 2.0529 1.1785 -4.9956 37 1 5.1774 0.4223 -6.2337 38 1 4.4365 2.0369 -6.3451 39 1 8.7101 2.7298 -10.5094 40 1 3.4359 1.8893 -2.0242 41 1 4.2071 0.2832 -1.9044 42 1 1.1493 0.5388 2.5436 43 1 2.6802 -1.9006 3.4745 44 1 1.3332 -1.6426 5.6083 45 1 0.4850 -0.1684 4.8946 46 1 2.7213 1.0038 4.6573 47 1 3.5700 -0.4701 5.3709 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181124945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:26 Heat of formation + Delta-G solvation = -65.056835 kcal Electronic energy + Delta-G solvation = -26678.342744 eV Core-core repulsion = 22794.053275 eV Total energy + Delta-G solvation = -3884.289469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40349 -40.91076 -38.99746 -38.09073 -36.31004 -34.69030 -34.14584 -32.66998 -30.95169 -30.55870 -28.17646 -27.78730 -25.61926 -24.24937 -23.29144 -22.56116 -21.82266 -21.33809 -20.79341 -19.65812 -18.53173 -18.12107 -17.95756 -17.43526 -17.14227 -16.71097 -16.48447 -16.01076 -15.87984 -15.64588 -15.48112 -14.99228 -14.92425 -14.67118 -14.49037 -14.05690 -13.72113 -13.70312 -13.51105 -13.35375 -13.31780 -13.09417 -13.03052 -12.78024 -12.70269 -12.56000 -12.44415 -12.39183 -12.29930 -11.89285 -11.71743 -11.50621 -11.18928 -11.09747 -10.88552 -10.56438 -9.85962 -9.79992 -9.53781 -9.03452 -8.53051 -6.24701 0.93249 1.29797 1.42728 1.45422 1.46088 1.51030 1.91120 2.03497 2.23489 2.65516 2.85055 2.95396 3.00305 3.39992 3.57203 3.61303 3.77142 3.79582 4.00216 4.02115 4.04463 4.12432 4.14818 4.18906 4.30506 4.35214 4.38040 4.60334 4.60690 4.74673 4.76918 4.79098 4.86218 4.94636 5.00532 5.07098 5.18403 5.21115 5.27831 5.34211 5.44966 5.69363 5.89214 6.09733 6.12428 6.29995 6.45284 6.91976 7.00145 7.13617 8.59195 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.001896 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.579048 B =14766.295398 C =15746.194075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.065 3.935 3 H 0.091 0.909 4 N -0.662 5.662 5 C 0.091 3.909 6 H 0.125 0.875 7 C -0.108 4.108 8 C 0.087 3.913 9 N -0.613 5.613 10 C 0.544 3.456 11 O -0.568 6.568 12 C -0.101 4.101 13 S -0.178 6.178 14 C -0.529 4.529 15 H 0.064 0.936 16 C 0.048 3.952 17 N -0.914 5.914 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.257 1.257 21 H -0.239 1.239 22 C 0.079 3.921 23 C 0.512 3.488 24 O -0.577 6.577 25 N -0.686 5.686 26 C 0.050 3.950 27 C -0.168 4.168 28 C -0.190 4.190 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.347 0.653 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.277 0.723 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.418 0.582 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.582 -4.489 28.015 36.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 H 0.108 0.892 4 N -0.296 5.296 5 C -0.020 4.020 6 H 0.143 0.857 7 C -0.147 4.147 8 C -0.034 4.034 9 N -0.347 5.347 10 C 0.332 3.668 11 O -0.447 6.447 12 C -0.251 4.251 13 S 0.048 5.952 14 C -0.676 4.676 15 H 0.082 0.918 16 C -0.158 4.158 17 N -0.552 5.552 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.181 1.181 21 H -0.163 1.163 22 C -0.046 4.046 23 C 0.299 3.701 24 O -0.455 6.455 25 N -0.337 5.337 26 C -0.056 4.056 27 C -0.206 4.206 28 C -0.229 4.229 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.255 0.745 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.124 0.876 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.330 -4.753 28.674 36.653 hybrid contribution 0.827 0.462 -0.834 1.262 sum -21.503 -4.291 27.840 35.438 Atomic orbital electron populations 1.21785 0.89812 1.03159 1.04123 1.21679 0.99185 0.96954 0.86939 0.89170 1.60683 1.34863 1.30755 1.03287 1.22784 0.93658 0.94139 0.91445 0.85743 1.22773 1.02612 0.97488 0.91793 1.22778 0.87517 0.97696 0.95452 1.48335 1.16774 1.61047 1.08579 1.19756 0.80697 0.76860 0.89456 1.90682 1.44846 1.48010 1.61134 1.23194 1.00936 1.05956 0.95063 1.84741 1.22180 1.81449 1.06789 1.22427 1.07436 1.47540 0.90219 0.91788 1.25524 1.00484 0.94655 0.95107 1.70008 1.32325 1.46296 1.06578 0.85893 0.80050 0.80059 0.80528 1.18813 1.18071 1.16257 1.22898 0.98341 1.01447 0.81928 1.21111 0.79084 0.84146 0.85753 1.90704 1.39681 1.28157 1.86990 1.45214 1.52784 1.31711 1.03983 1.21614 1.04385 0.98317 0.81280 1.23457 0.95668 1.03834 0.97601 1.23496 0.98453 0.99839 1.01062 0.89802 0.89870 0.92523 0.83087 0.90981 0.86343 0.89869 0.88667 0.87194 0.86762 0.91311 0.91681 0.93467 0.74461 0.86904 0.87138 0.86730 0.87614 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.30 71.98 0.67 -0.15 16 2 C 0.07 0.74 2.90 44.17 0.13 0.87 16 3 H 0.09 0.78 7.86 -2.39 -0.02 0.76 16 4 N -0.66 -10.28 6.07 -467.21 -2.84 -13.12 16 5 C 0.09 1.23 3.02 46.11 0.14 1.37 16 6 H 0.12 1.07 7.23 -2.39 -0.02 1.06 16 7 C -0.11 -1.42 6.77 31.99 0.22 -1.21 16 8 C 0.09 1.53 6.69 86.86 0.58 2.11 16 9 N -0.61 -16.32 3.33 -811.78 -2.70 -19.02 16 10 C 0.54 20.35 7.87 87.66 0.69 21.04 16 11 O -0.57 -26.13 16.19 -3.04 -0.05 -26.18 16 12 C -0.10 -3.98 5.16 71.24 0.37 -3.61 16 13 S -0.18 -9.27 18.55 -56.49 -1.05 -10.31 16 14 C -0.53 -31.15 10.04 67.95 0.68 -30.46 16 15 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 16 C 0.05 2.84 5.50 84.86 0.47 3.31 16 17 N -0.91 -55.85 13.97 21.65 0.30 -55.54 16 18 Si 0.91 45.56 27.74 68.60 1.90 47.47 16 19 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 22 C 0.08 1.74 6.59 86.73 0.57 2.31 16 23 C 0.51 8.56 7.18 87.66 0.63 9.19 16 24 O -0.58 -15.28 15.21 -3.03 -0.05 -15.33 16 25 N -0.69 -7.28 5.46 -442.54 -2.42 -9.70 16 26 C 0.05 0.60 6.43 44.99 0.29 0.89 16 27 C -0.17 -1.03 10.46 30.60 0.32 -0.71 16 28 C -0.19 -1.56 10.46 30.60 0.32 -1.24 16 29 H 0.08 0.13 7.56 -2.39 -0.02 0.11 16 30 H 0.08 0.36 7.51 -2.39 -0.02 0.34 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.35 7.32 6.76 -89.70 -0.61 6.72 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 1.50 7.48 -2.39 -0.02 1.49 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 4.04 7.85 -2.40 -0.02 4.02 16 38 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 39 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.24 7.49 -2.38 -0.02 1.22 16 42 H 0.42 1.61 8.25 -92.71 -0.76 0.85 16 43 H 0.11 1.94 7.40 -2.39 -0.02 1.93 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -82.39 398.96 -1.24 -83.63 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.42 Total: 14.40 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.07 Total: 3.71 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -7.65 Total: -97.38 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -0.10 Total: -41.51 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.05 Total: -10.31 kcal Total: -82.39 -1.24 -83.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181124945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.571 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds