Wall clock time and date at job start Wed Apr 1 2020 00:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 H 1.08998 * 110.64035 * 328.14193 * 5 4 2 7 7 C 1.55154 * 110.71735 * 204.99928 * 5 4 2 8 8 C 1.54914 * 101.58050 * 206.13223 * 7 5 4 9 9 N 1.47420 * 104.83046 * 37.00926 * 8 7 5 10 10 C 1.34783 * 125.64820 * 155.90215 * 9 8 7 11 11 O 1.21282 * 119.99964 * 179.97438 * 10 9 8 12 12 C 1.50702 * 119.99632 * 359.97438 * 10 9 8 13 13 S 1.81003 * 109.46640 * 179.97438 * 12 10 9 14 14 C 1.76205 * 99.99703 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99921 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31636 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00282 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47054 * 90.00183 * 18 16 14 20 20 H 1.48497 * 109.47041 * 209.99966 * 18 16 14 21 21 H 1.48501 * 109.47004 * 330.00301 * 18 16 14 22 22 C 1.47019 * 108.70480 * 335.87318 * 9 8 7 23 23 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 24 24 O 1.21289 * 119.99875 * 240.00010 * 23 2 1 25 25 N 1.34779 * 120.00096 * 60.00147 * 23 2 1 26 26 C 1.46501 * 120.00029 * 180.02562 * 25 23 2 27 27 C 1.52997 * 117.49743 * 223.62501 * 26 25 23 28 28 C 1.52994 * 117.49980 * 154.99988 * 26 25 23 29 29 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 31 31 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 32 32 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 33 33 H 1.08996 * 111.00627 * 324.20988 * 7 5 4 34 34 H 1.09002 * 111.00439 * 88.06090 * 7 5 4 35 35 H 1.09002 * 110.36438 * 155.84829 * 8 7 5 36 36 H 1.08997 * 110.36977 * 278.17182 * 8 7 5 37 37 H 1.09001 * 109.46775 * 299.99485 * 12 10 9 38 38 H 1.08995 * 109.47157 * 59.99583 * 12 10 9 39 39 H 0.96997 * 120.00063 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.88072 * 241.64050 * 22 9 8 41 41 H 1.09001 * 109.88743 * 120.47493 * 22 9 8 42 42 H 0.96995 * 119.99656 * 359.97438 * 25 23 2 43 43 H 1.09005 * 115.54857 * 9.32351 * 26 25 23 44 44 H 1.08993 * 117.49993 * 359.97438 * 27 26 25 45 45 H 1.09001 * 117.50209 * 145.02457 * 27 26 25 46 46 H 1.09000 * 117.49827 * 214.97598 * 28 26 25 47 47 H 1.08994 * 117.49696 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 1 2.3094 1.2366 2.0177 7 6 3.1299 -0.2659 3.3820 8 6 2.5815 0.3494 4.6936 9 7 1.1156 0.2504 4.5728 10 6 0.2428 0.2233 5.5995 11 8 -0.9473 0.1398 5.3817 12 6 0.7460 0.2967 7.0182 13 16 -0.6576 0.2392 8.1597 14 6 0.1954 0.3379 9.6984 15 1 1.2730 0.4071 9.7150 16 6 -0.5177 0.3267 10.8891 17 7 -1.8312 0.2418 10.8689 18 14 0.3865 0.4305 12.5204 19 1 0.5375 1.8547 12.9128 20 1 -0.3879 -0.2905 13.5623 21 1 1.7286 -0.1900 12.3828 22 6 0.7633 0.1867 3.1469 23 6 2.0323 -0.7104 -1.2304 24 8 2.7296 -1.6966 -1.1191 25 7 1.7067 -0.2500 -2.4546 26 6 2.1946 -0.9410 -3.6507 27 6 2.7316 -0.0789 -4.7949 28 6 1.3818 -0.7850 -4.9375 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.9173 -1.1205 1.0288 33 1 3.1459 -1.3543 3.4378 34 1 4.1202 0.1264 3.1506 35 1 2.9306 -0.2203 5.5548 36 1 2.8854 1.3927 4.7794 37 1 1.4080 -0.5471 7.2130 38 1 1.2929 1.2284 7.1619 39 1 -2.3295 0.2336 11.7011 40 1 0.1441 1.0430 2.8794 41 1 0.2283 -0.7398 2.9381 42 1 1.1488 0.5384 -2.5435 43 1 2.6783 -1.9018 -3.4742 44 1 2.7216 1.0024 -4.6578 45 1 3.5688 -0.4723 -5.3714 46 1 1.3311 -1.6430 -5.6078 47 1 0.4840 -0.1687 -4.8940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181124951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:29 Heat of formation + Delta-G solvation = -36.270396 kcal Electronic energy + Delta-G solvation = -26566.793554 eV Core-core repulsion = 22683.752358 eV Total energy + Delta-G solvation = -3883.041196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62715 -39.74363 -37.99718 -37.34550 -35.41525 -33.52132 -32.41066 -31.66341 -29.71056 -29.43514 -27.46486 -25.46841 -24.72388 -23.24620 -22.97374 -22.03181 -21.00663 -20.72853 -19.33020 -17.93687 -17.53139 -17.21533 -16.65575 -16.52665 -16.04400 -15.32905 -15.11313 -15.05166 -14.78787 -14.71148 -14.34988 -13.90118 -13.71186 -13.49942 -13.25549 -13.03058 -12.78419 -12.58531 -12.54299 -12.26559 -12.25440 -12.17314 -11.89768 -11.74276 -11.72560 -11.39346 -11.10702 -11.05646 -11.01882 -11.00174 -10.74701 -10.20543 -9.79692 -9.38490 -9.32487 -9.04812 -8.93591 -8.45199 -8.20799 -6.47921 -6.19720 -3.90228 2.06278 2.43959 2.92185 3.11321 3.23609 3.27022 3.31618 3.33723 3.58682 3.77221 4.09441 4.18579 4.20718 4.23896 4.35564 4.40729 4.41828 4.61185 4.69234 4.84531 5.00920 5.04529 5.11161 5.15344 5.17161 5.21118 5.27772 5.34176 5.44483 5.48233 5.48357 5.54427 5.62538 5.66136 5.82324 5.88527 5.91597 5.95112 5.96569 6.16386 6.46694 6.56079 6.88666 7.01262 7.61273 7.67972 7.71186 8.37068 8.60673 9.25458 10.87724 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.001667 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.815601 B =16793.318015 C =17265.805067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.073 0.927 4 N -0.661 5.661 5 C 0.075 3.925 6 H 0.065 0.935 7 C -0.136 4.136 8 C 0.103 3.897 9 N -0.626 5.626 10 C 0.548 3.452 11 O -0.515 6.515 12 C -0.146 4.146 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.119 3.881 23 C 0.519 3.481 24 O -0.528 6.528 25 N -0.702 5.702 26 C 0.079 3.921 27 C -0.194 4.194 28 C -0.188 4.188 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.361 0.639 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.403 0.597 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.831 2.267 -30.740 33.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 H 0.091 0.909 4 N -0.297 5.297 5 C -0.036 4.036 6 H 0.083 0.917 7 C -0.175 4.175 8 C -0.020 4.020 9 N -0.364 5.364 10 C 0.337 3.663 11 O -0.389 6.389 12 C -0.297 4.297 13 S 0.166 5.834 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.005 4.005 23 C 0.305 3.695 24 O -0.403 6.403 25 N -0.352 5.352 26 C -0.027 4.027 27 C -0.232 4.232 28 C -0.227 4.227 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.184 0.816 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.238 0.762 43 H 0.156 0.844 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.733 1.144 -30.613 32.144 hybrid contribution 2.466 1.188 0.893 2.880 sum 12.199 2.332 -29.720 32.211 Atomic orbital electron populations 1.21863 0.91745 1.03831 1.02639 1.21587 0.98112 0.96442 0.88355 0.90904 1.60311 1.35532 1.31660 1.02219 1.22663 0.95576 0.94662 0.90669 0.91714 1.23012 0.97916 1.02532 0.94008 1.22234 0.80628 1.00830 0.98350 1.48461 1.06773 1.75417 1.05736 1.20016 0.85433 0.75303 0.85568 1.90707 1.15467 1.47977 1.84779 1.23506 1.06598 1.04733 0.94861 1.85405 1.05013 1.96289 0.96701 1.22864 0.95213 1.58600 0.91653 0.90940 1.24987 0.94965 0.94557 0.99041 1.70022 1.05576 1.46743 1.27935 0.86170 0.79375 0.78316 0.81645 1.20292 1.20747 1.19697 1.21926 0.95876 1.02577 0.80107 1.20718 0.79614 0.84586 0.84537 1.90712 1.37491 1.25734 1.86319 1.45352 1.53454 1.31702 1.04722 1.21623 1.02222 0.98449 0.80444 1.23435 0.97810 0.99553 1.02426 1.23384 0.95538 1.03828 0.99923 0.90982 0.90678 0.92172 0.81601 0.89266 0.89840 0.89978 0.91320 0.89286 0.89345 0.92197 0.91983 0.90129 0.76228 0.84396 0.88469 0.87906 0.87748 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.15 37.16 0.34 -0.64 16 2 C 0.07 0.49 3.03 -68.86 -0.21 0.28 16 3 H 0.07 0.39 7.44 -51.93 -0.39 0.01 16 4 N -0.66 -5.90 6.02 -99.04 -0.60 -6.50 16 5 C 0.07 0.66 3.25 -65.88 -0.21 0.44 16 6 H 0.07 0.48 7.44 -51.93 -0.39 0.10 16 7 C -0.14 -1.13 6.47 -24.58 -0.16 -1.29 16 8 C 0.10 1.11 6.69 -2.53 -0.02 1.09 16 9 N -0.63 -9.27 3.33 -170.52 -0.57 -9.84 16 10 C 0.55 10.88 7.87 -10.98 -0.09 10.79 16 11 O -0.52 -12.27 16.19 5.56 0.09 -12.18 16 12 C -0.15 -3.06 5.16 36.01 0.19 -2.87 16 13 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 14 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 18 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.12 1.48 5.29 -3.07 -0.02 1.47 16 23 C 0.52 4.34 7.18 -10.99 -0.08 4.26 16 24 O -0.53 -6.38 15.21 5.55 0.08 -6.29 16 25 N -0.70 -3.99 5.46 -53.81 -0.29 -4.29 16 26 C 0.08 0.45 6.43 -67.93 -0.44 0.02 16 27 C -0.19 -0.78 10.46 -26.73 -0.28 -1.06 16 28 C -0.19 -0.73 10.45 -26.73 -0.28 -1.01 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.58 6.28 -51.93 -0.33 0.26 16 31 H 0.06 0.27 7.56 -51.93 -0.39 -0.13 16 32 H 0.36 3.36 7.14 -39.29 -0.28 3.08 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 41 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 42 H 0.40 1.28 8.24 -40.82 -0.34 0.94 16 43 H 0.14 1.02 7.40 -51.93 -0.38 0.64 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -36.80 399.07 -10.27 -47.06 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.45 Total: 0.60 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.05 Total: -1.59 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.72 Total: -46.22 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.80 -10.27 -47.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181124951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.793 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds