Wall clock time and date at job start Wed Apr 1 2020 00:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 H 1.08998 * 110.64035 * 328.14193 * 5 4 2 7 7 C 1.55154 * 110.71735 * 204.99928 * 5 4 2 8 8 C 1.54914 * 101.58050 * 206.13223 * 7 5 4 9 9 N 1.47420 * 104.83046 * 37.00926 * 8 7 5 10 10 C 1.34783 * 125.64820 * 155.90215 * 9 8 7 11 11 O 1.21282 * 119.99964 * 179.97438 * 10 9 8 12 12 C 1.50702 * 119.99632 * 359.97438 * 10 9 8 13 13 S 1.81003 * 109.46640 * 179.97438 * 12 10 9 14 14 C 1.76205 * 99.99703 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99921 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31636 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00282 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47054 * 90.00183 * 18 16 14 20 20 H 1.48497 * 109.47041 * 209.99966 * 18 16 14 21 21 H 1.48501 * 109.47004 * 330.00301 * 18 16 14 22 22 C 1.47019 * 108.70480 * 335.87318 * 9 8 7 23 23 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 24 24 O 1.21289 * 119.99875 * 240.00010 * 23 2 1 25 25 N 1.34779 * 120.00096 * 60.00147 * 23 2 1 26 26 C 1.46501 * 120.00029 * 180.02562 * 25 23 2 27 27 C 1.52997 * 117.49743 * 223.62501 * 26 25 23 28 28 C 1.52994 * 117.49980 * 154.99988 * 26 25 23 29 29 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 31 31 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 32 32 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 33 33 H 1.08996 * 111.00627 * 324.20988 * 7 5 4 34 34 H 1.09002 * 111.00439 * 88.06090 * 7 5 4 35 35 H 1.09002 * 110.36438 * 155.84829 * 8 7 5 36 36 H 1.08997 * 110.36977 * 278.17182 * 8 7 5 37 37 H 1.09001 * 109.46775 * 299.99485 * 12 10 9 38 38 H 1.08995 * 109.47157 * 59.99583 * 12 10 9 39 39 H 0.96997 * 120.00063 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.88072 * 241.64050 * 22 9 8 41 41 H 1.09001 * 109.88743 * 120.47493 * 22 9 8 42 42 H 0.96995 * 119.99656 * 359.97438 * 25 23 2 43 43 H 1.09005 * 115.54857 * 9.32351 * 26 25 23 44 44 H 1.08993 * 117.49993 * 359.97438 * 27 26 25 45 45 H 1.09001 * 117.50209 * 145.02457 * 27 26 25 46 46 H 1.09000 * 117.49827 * 214.97598 * 28 26 25 47 47 H 1.08994 * 117.49696 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 1 2.3094 1.2366 2.0177 7 6 3.1299 -0.2659 3.3820 8 6 2.5815 0.3494 4.6936 9 7 1.1156 0.2504 4.5728 10 6 0.2428 0.2233 5.5995 11 8 -0.9473 0.1398 5.3817 12 6 0.7460 0.2967 7.0182 13 16 -0.6576 0.2392 8.1597 14 6 0.1954 0.3379 9.6984 15 1 1.2730 0.4071 9.7150 16 6 -0.5177 0.3267 10.8891 17 7 -1.8312 0.2418 10.8689 18 14 0.3865 0.4305 12.5204 19 1 0.5375 1.8547 12.9128 20 1 -0.3879 -0.2905 13.5623 21 1 1.7286 -0.1900 12.3828 22 6 0.7633 0.1867 3.1469 23 6 2.0323 -0.7104 -1.2304 24 8 2.7296 -1.6966 -1.1191 25 7 1.7067 -0.2500 -2.4546 26 6 2.1946 -0.9410 -3.6507 27 6 2.7316 -0.0789 -4.7949 28 6 1.3818 -0.7850 -4.9375 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.9173 -1.1205 1.0288 33 1 3.1459 -1.3543 3.4378 34 1 4.1202 0.1264 3.1506 35 1 2.9306 -0.2203 5.5548 36 1 2.8854 1.3927 4.7794 37 1 1.4080 -0.5471 7.2130 38 1 1.2929 1.2284 7.1619 39 1 -2.3295 0.2336 11.7011 40 1 0.1441 1.0430 2.8794 41 1 0.2283 -0.7398 2.9381 42 1 1.1488 0.5384 -2.5435 43 1 2.6783 -1.9018 -3.4742 44 1 2.7216 1.0024 -4.6578 45 1 3.5688 -0.4723 -5.3714 46 1 1.3311 -1.6430 -5.6078 47 1 0.4840 -0.1687 -4.8940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181124951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:28 Heat of formation + Delta-G solvation = -64.163762 kcal Electronic energy + Delta-G solvation = -26568.003101 eV Core-core repulsion = 22683.752358 eV Total energy + Delta-G solvation = -3884.250743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34447 -40.85484 -38.93865 -38.06353 -36.29113 -34.58460 -34.12624 -32.62970 -31.04594 -30.23007 -28.55200 -27.62236 -25.37277 -24.23367 -23.27240 -22.52921 -21.80306 -21.32171 -20.68602 -19.62941 -18.44359 -17.94866 -17.76087 -17.58695 -16.88154 -16.67404 -16.53493 -16.10927 -15.93787 -15.60406 -15.40061 -15.16938 -14.64359 -14.52937 -14.24607 -14.16409 -13.74916 -13.70095 -13.38538 -13.20990 -13.17999 -13.05911 -12.88622 -12.86102 -12.61537 -12.52223 -12.49608 -12.35427 -12.09789 -11.79833 -11.70944 -11.48089 -11.13893 -10.99888 -10.84861 -10.28195 -9.80380 -9.70017 -9.57315 -8.68041 -8.34310 -6.13294 1.23864 1.43198 1.44832 1.46039 1.56512 1.56773 1.92705 2.10477 2.27580 2.97574 2.99807 3.04393 3.22575 3.44773 3.57818 3.61227 3.80934 3.90670 4.03089 4.04291 4.06641 4.13552 4.17927 4.23479 4.32313 4.41902 4.44447 4.64135 4.67308 4.76381 4.77021 4.81695 4.85735 4.91439 4.94148 5.02503 5.13199 5.20443 5.28813 5.37362 5.41821 5.46817 5.91509 6.19994 6.26187 6.39346 6.47682 7.06629 7.11767 7.14152 8.75064 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.040001 B = 0.001667 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.815601 B =16793.318015 C =17265.805067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 H 0.102 0.898 4 N -0.676 5.676 5 C 0.089 3.911 6 H 0.092 0.908 7 C -0.126 4.126 8 C 0.092 3.908 9 N -0.617 5.617 10 C 0.544 3.456 11 O -0.569 6.569 12 C -0.119 4.119 13 S -0.152 6.152 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.258 1.258 22 C 0.115 3.885 23 C 0.517 3.483 24 O -0.572 6.572 25 N -0.687 5.687 26 C 0.052 3.948 27 C -0.182 4.182 28 C -0.177 4.177 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.360 0.640 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.417 0.583 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.577 3.851 -31.873 35.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 H 0.119 0.881 4 N -0.313 5.313 5 C -0.022 4.022 6 H 0.110 0.890 7 C -0.164 4.164 8 C -0.030 4.030 9 N -0.352 5.352 10 C 0.332 3.668 11 O -0.447 6.447 12 C -0.270 4.270 13 S 0.075 5.925 14 C -0.694 4.694 15 H 0.102 0.898 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.182 1.182 22 C -0.008 4.008 23 C 0.304 3.696 24 O -0.451 6.451 25 N -0.338 5.338 26 C -0.054 4.054 27 C -0.220 4.220 28 C -0.215 4.215 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.184 0.816 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.519 2.758 -31.819 34.304 hybrid contribution 1.641 0.680 1.048 2.063 sum 14.161 3.438 -30.771 34.047 Atomic orbital electron populations 1.21852 0.91770 1.02634 1.03556 1.21631 0.97875 0.97410 0.87141 0.88085 1.60196 1.35672 1.32440 1.03007 1.22557 0.93168 0.96089 0.90351 0.89005 1.23005 0.99224 1.01980 0.92159 1.22636 0.77684 1.02697 0.99964 1.48415 1.08305 1.72783 1.05705 1.19808 0.85261 0.75537 0.86151 1.90682 1.17702 1.50917 1.85441 1.23297 1.03440 1.06392 0.93847 1.85604 1.10661 1.96644 0.99603 1.23199 0.95685 1.58681 0.91857 0.89848 1.26142 0.95808 0.93684 1.03456 1.70191 1.07601 1.47819 1.29174 0.84934 0.78279 0.78796 0.75841 1.19175 1.20312 1.18171 1.22097 0.98164 1.01365 0.79167 1.20932 0.79088 0.84056 0.85479 1.90693 1.39752 1.27718 1.86943 1.45234 1.52771 1.31738 1.04034 1.21617 1.04255 0.98407 0.81124 1.23489 0.98066 0.99856 1.00632 1.23458 0.95932 1.04006 0.98064 0.93244 0.91609 0.89380 0.81598 0.90243 0.86356 0.89754 0.88899 0.87663 0.87299 0.91976 0.91990 0.92559 0.74555 0.86704 0.87421 0.87510 0.87312 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.15 71.98 0.66 -1.12 16 2 C 0.07 0.90 3.03 44.17 0.13 1.03 16 3 H 0.10 0.73 7.44 -2.38 -0.02 0.71 16 4 N -0.68 -11.15 6.02 -467.24 -2.81 -13.96 16 5 C 0.09 1.34 3.25 46.10 0.15 1.49 16 6 H 0.09 0.96 7.44 -2.39 -0.02 0.95 16 7 C -0.13 -1.70 6.47 31.99 0.21 -1.49 16 8 C 0.09 1.71 6.69 86.86 0.58 2.29 16 9 N -0.62 -17.68 3.33 -811.79 -2.70 -20.38 16 10 C 0.54 21.83 7.87 87.66 0.69 22.52 16 11 O -0.57 -28.25 16.19 -3.04 -0.05 -28.30 16 12 C -0.12 -4.94 5.16 71.24 0.37 -4.57 16 13 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 14 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 15 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 16 C 0.01 0.79 5.49 84.86 0.47 1.26 16 17 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 18 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 C 0.12 2.80 5.29 86.73 0.46 3.26 16 23 C 0.52 8.15 7.18 87.66 0.63 8.78 16 24 O -0.57 -13.95 15.21 -3.06 -0.05 -13.99 16 25 N -0.69 -6.78 5.46 -442.53 -2.42 -9.20 16 26 C 0.05 0.55 6.43 44.99 0.29 0.84 16 27 C -0.18 -1.12 10.46 30.59 0.32 -0.80 16 28 C -0.18 -1.05 10.45 30.59 0.32 -0.73 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.98 6.28 -2.38 -0.01 0.96 16 31 H 0.09 0.58 7.56 -2.39 -0.02 0.57 16 32 H 0.36 6.24 7.14 -89.69 -0.64 5.60 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.56 7.48 -2.39 -0.02 1.55 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 4.00 7.85 -2.39 -0.02 3.99 16 38 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 39 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.06 1.51 7.53 -2.39 -0.02 1.49 16 41 H 0.06 1.65 8.03 -2.39 -0.02 1.64 16 42 H 0.42 1.59 8.24 -92.71 -0.76 0.83 16 43 H 0.12 1.78 7.40 -2.38 -0.02 1.76 16 44 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -84.87 399.07 -1.37 -86.24 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.41 Total: 18.03 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.92 Total: 1.82 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -7.64 Total: -99.80 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.10 Total: -42.29 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -84.87 -1.37 -86.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181124951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.078 kcal (2) G-P(sol) polarization free energy of solvation -84.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds