Wall clock time and date at job start Wed Apr 1 2020 00:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00205 * 2 1 4 4 O 1.21278 * 119.99715 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00184 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47143 * 299.99785 * 5 3 2 7 7 C 1.52995 * 109.47363 * 59.99629 * 5 3 2 8 8 N 1.46900 * 109.47493 * 179.97438 * 5 3 2 9 9 C 1.47120 * 111.00314 * 174.99748 * 8 5 3 10 10 C 1.54046 * 106.79515 * 219.12349 * 9 8 5 11 11 H 1.08996 * 113.41796 * 263.62088 * 10 9 8 12 12 C 1.55136 * 108.24169 * 135.88760 * 10 9 8 13 13 C 1.54860 * 101.76672 * 286.05162 * 12 10 9 14 14 N 1.47408 * 104.81157 * 322.81302 * 13 12 10 15 15 C 1.34777 * 125.58610 * 204.55614 * 14 13 12 16 16 O 1.21283 * 119.99496 * 180.02562 * 15 14 13 17 17 C 1.50701 * 120.00296 * 0.02562 * 15 14 13 18 18 S 1.80999 * 109.46928 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00088 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99542 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00307 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00130 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47421 * 89.99747 * 23 21 19 25 25 H 1.48498 * 109.47240 * 210.00251 * 23 21 19 26 26 H 1.48510 * 109.47087 * 329.99849 * 23 21 19 27 27 C 1.46727 * 108.81633 * 24.57534 * 14 13 12 28 28 H 1.08998 * 111.79741 * 235.93142 * 27 14 13 29 29 C 1.47061 * 111.00013 * 53.33031 * 8 5 3 30 30 H 1.08995 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47226 * 300.00677 * 1 2 3 32 32 H 1.09008 * 109.47063 * 60.00179 * 1 2 3 33 33 H 0.96997 * 120.00389 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47181 * 60.00425 * 7 5 3 35 35 H 1.08998 * 109.47331 * 179.97438 * 7 5 3 36 36 H 1.09003 * 109.47192 * 300.00278 * 7 5 3 37 37 H 1.08999 * 109.99343 * 99.79340 * 9 8 5 38 38 H 1.08997 * 110.00040 * 338.45859 * 9 8 5 39 39 H 1.09000 * 110.97118 * 44.16894 * 12 10 9 40 40 H 1.08998 * 110.96852 * 167.93248 * 12 10 9 41 41 H 1.09001 * 110.36576 * 203.98246 * 13 12 10 42 42 H 1.08996 * 110.46502 * 81.69505 * 13 12 10 43 43 H 1.09000 * 109.46963 * 299.99769 * 17 15 14 44 44 H 1.09001 * 109.46905 * 60.00393 * 17 15 14 45 45 H 0.96994 * 119.99843 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.76613 * 243.58789 * 29 8 5 47 47 H 1.09004 * 109.75970 * 4.30747 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 1 4.0088 0.6536 0.8908 7 6 4.1564 0.4456 -1.2482 8 7 4.1356 2.5522 -0.0002 9 6 5.6013 2.5932 0.1201 10 6 5.9389 3.7764 1.0470 11 1 6.1899 4.6904 0.5087 12 6 7.0269 3.3121 2.0506 13 6 6.2099 2.4074 3.0058 14 7 4.9030 3.0770 3.1332 15 6 4.0531 2.9473 4.1712 16 8 2.9993 3.5477 4.1708 17 6 4.4123 2.0563 5.3323 18 16 3.0783 2.0920 6.5552 19 6 3.7439 0.9984 7.7659 20 1 4.7103 0.5425 7.6087 21 6 3.0267 0.7236 8.9221 22 7 1.8495 1.2804 9.1143 23 14 3.7319 -0.4363 10.2052 24 1 4.5353 0.3384 11.1848 25 1 2.6229 -1.1273 10.9107 26 1 4.5984 -1.4425 9.5400 27 6 4.6788 3.9075 1.9445 28 1 4.4848 4.9472 2.2080 29 6 3.5379 3.3231 1.1003 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.9500 -0.8400 0.0004 34 1 3.7935 0.9592 -2.1385 35 1 5.2463 0.4460 -1.2480 36 1 3.7930 -0.5821 -1.2481 37 1 6.0515 2.7477 -0.8604 38 1 5.9658 1.6629 0.5557 39 1 7.8063 2.7421 1.5450 40 1 7.4517 4.1613 2.5859 41 1 6.6993 2.3422 3.9776 42 1 6.0866 1.4132 2.5764 43 1 4.5519 1.0353 4.9772 44 1 5.3354 2.4112 5.7906 45 1 1.3485 1.0887 9.9224 46 1 2.9277 4.1306 0.6958 47 1 2.9214 2.6686 1.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186917406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:14 Heat of formation + Delta-G solvation = -48.786455 kcal Electronic energy + Delta-G solvation = -28780.675240 eV Core-core repulsion = 24897.091307 eV Total energy + Delta-G solvation = -3883.583933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18284 -39.70851 -38.07783 -35.93284 -34.73883 -32.71398 -32.44700 -31.73457 -29.75726 -28.07069 -27.54460 -26.78923 -25.49241 -24.17045 -22.78736 -21.83807 -20.43614 -20.22906 -19.00497 -17.70900 -17.39434 -16.97352 -16.56811 -15.96154 -15.63176 -15.24935 -14.99218 -14.82845 -14.73436 -14.28710 -13.97265 -13.81203 -13.75632 -13.55942 -12.99016 -12.87877 -12.74238 -12.62152 -12.48203 -12.42442 -12.16045 -12.00106 -11.98244 -11.74016 -11.33156 -11.29984 -11.08257 -11.03809 -10.96763 -10.93815 -10.77076 -9.83251 -9.74890 -9.38057 -9.23056 -9.08430 -8.70276 -8.27143 -8.24291 -6.51922 -6.23142 -3.94068 2.57458 2.89002 2.96510 3.06040 3.20361 3.24021 3.28290 3.58706 3.77144 4.09323 4.18803 4.36100 4.42699 4.53525 4.75406 4.86758 4.91259 4.96266 5.02597 5.07691 5.10940 5.11826 5.25749 5.32139 5.37354 5.39314 5.41776 5.48930 5.56862 5.61629 5.62714 5.70552 5.76217 5.78676 5.87892 5.90250 5.96419 6.10021 6.19903 6.30638 6.49136 6.80637 6.86221 7.33485 7.57300 7.68173 8.14388 8.33209 8.57300 9.21817 10.84269 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.003357 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.978673 B = 8338.942645 C = 9662.350403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.737 5.737 3 C 0.515 3.485 4 O -0.515 6.515 5 C 0.060 3.940 6 H 0.066 0.934 7 C -0.138 4.138 8 N -0.508 5.508 9 C 0.051 3.949 10 C -0.106 4.106 11 H 0.109 0.891 12 C -0.125 4.125 13 C 0.099 3.901 14 N -0.621 5.621 15 C 0.545 3.455 16 O -0.508 6.508 17 C -0.146 4.146 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.119 3.881 28 H 0.091 0.909 29 C 0.054 3.946 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.090 0.910 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.101 -3.129 -22.461 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.390 5.390 3 C 0.300 3.700 4 O -0.389 6.389 5 C -0.052 4.052 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.233 5.233 9 C -0.077 4.077 10 C -0.126 4.126 11 H 0.127 0.873 12 C -0.163 4.163 13 C -0.024 4.024 14 N -0.359 5.359 15 C 0.334 3.666 16 O -0.382 6.382 17 C -0.296 4.296 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C 0.014 3.986 28 H 0.109 0.891 29 C -0.074 4.074 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.666 -1.244 -22.728 24.018 hybrid contribution 2.098 -2.355 1.699 3.583 sum 9.764 -3.600 -21.029 23.463 Atomic orbital electron populations 1.21535 0.79307 1.02191 1.02532 1.45748 1.07901 1.08539 1.76800 1.20434 0.89701 0.83836 0.76029 1.90744 1.69928 1.30899 1.47331 1.21786 0.92117 0.91601 0.99715 0.91604 1.21779 1.01848 0.99194 0.96785 1.63094 1.05267 1.09338 1.45570 1.22895 0.87962 0.97273 0.99567 1.23152 0.94582 0.99391 0.95441 0.87270 1.22812 0.96979 1.00018 0.96509 1.22302 0.83808 0.95824 1.00493 1.48543 1.19833 1.47888 1.19641 1.20047 0.82984 0.81888 0.81699 1.90734 1.23042 1.46024 1.78353 1.23507 1.06809 1.00666 0.98656 1.85449 1.21015 1.61952 1.14797 1.22854 1.07455 1.31908 1.06205 0.91006 1.24986 0.94694 0.96291 0.97542 1.70020 1.11694 1.41631 1.26860 0.86175 0.78607 0.80169 0.80589 1.20233 1.20720 1.19719 1.22426 0.94980 0.96010 0.85229 0.89121 1.22896 0.95683 0.98767 0.90089 0.90687 0.91902 0.92292 0.76711 0.91118 0.91372 0.91858 0.89940 0.92951 0.89641 0.90130 0.90127 0.91948 0.89654 0.89363 0.92159 0.89156 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.70 59.85 0.64 1.49 16 2 N -0.74 -7.44 5.61 -67.08 -0.38 -7.82 16 3 C 0.51 6.84 6.45 -10.99 -0.07 6.76 16 4 O -0.52 -9.03 14.18 5.56 0.08 -8.95 16 5 C 0.06 0.64 2.15 -68.87 -0.15 0.49 16 6 H 0.07 0.72 7.97 -51.93 -0.41 0.30 16 7 C -0.14 -1.00 9.07 37.16 0.34 -0.66 16 8 N -0.51 -5.99 4.85 -226.73 -1.10 -7.09 16 9 C 0.05 0.44 4.94 -3.16 -0.02 0.42 16 10 C -0.11 -0.95 4.33 -87.75 -0.38 -1.33 16 11 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.12 -0.97 6.35 -24.62 -0.16 -1.12 16 13 C 0.10 1.06 6.22 -2.56 -0.02 1.04 16 14 N -0.62 -9.24 2.99 -162.43 -0.48 -9.73 16 15 C 0.55 10.87 7.42 -10.98 -0.08 10.79 16 16 O -0.51 -12.25 15.72 5.56 0.09 -12.17 16 17 C -0.15 -3.05 5.15 36.01 0.19 -2.86 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.12 1.58 3.59 -66.36 -0.24 1.34 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 C 0.05 0.80 4.64 -3.48 -0.02 0.79 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.40 2.75 8.25 -40.82 -0.34 2.41 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.41 7.25 -51.93 -0.38 0.03 16 36 H 0.06 0.34 7.56 -51.93 -0.39 -0.06 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.42 5.83 -51.93 -0.30 0.11 16 39 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16 42 H 0.06 0.61 7.19 -51.93 -0.37 0.24 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.71 7.84 -51.92 -0.41 1.30 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.09 1.49 7.94 -51.93 -0.41 1.08 16 47 H 0.07 1.25 5.62 -51.93 -0.29 0.95 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -37.62 384.37 -9.73 -47.34 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.46 Total: 1.51 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 0.24 Total: 4.14 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -1.23 Total: -50.17 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.17 Total: -21.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.62 -9.73 -47.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.442 kcal (2) G-P(sol) polarization free energy of solvation -37.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds