Wall clock time and date at job start Wed Apr 1 2020 00:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00205 * 2 1 4 4 O 1.21278 * 119.99715 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00184 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47143 * 299.99785 * 5 3 2 7 7 C 1.52995 * 109.47363 * 59.99629 * 5 3 2 8 8 N 1.46900 * 109.47493 * 179.97438 * 5 3 2 9 9 C 1.47120 * 111.00314 * 174.99748 * 8 5 3 10 10 C 1.54046 * 106.79515 * 219.12349 * 9 8 5 11 11 H 1.08996 * 113.41796 * 263.62088 * 10 9 8 12 12 C 1.55136 * 108.24169 * 135.88760 * 10 9 8 13 13 C 1.54860 * 101.76672 * 286.05162 * 12 10 9 14 14 N 1.47408 * 104.81157 * 322.81302 * 13 12 10 15 15 C 1.34777 * 125.58610 * 204.55614 * 14 13 12 16 16 O 1.21283 * 119.99496 * 180.02562 * 15 14 13 17 17 C 1.50701 * 120.00296 * 0.02562 * 15 14 13 18 18 S 1.80999 * 109.46928 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00088 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99542 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00307 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00130 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47421 * 89.99747 * 23 21 19 25 25 H 1.48498 * 109.47240 * 210.00251 * 23 21 19 26 26 H 1.48510 * 109.47087 * 329.99849 * 23 21 19 27 27 C 1.46727 * 108.81633 * 24.57534 * 14 13 12 28 28 H 1.08998 * 111.79741 * 235.93142 * 27 14 13 29 29 C 1.47061 * 111.00013 * 53.33031 * 8 5 3 30 30 H 1.08995 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47226 * 300.00677 * 1 2 3 32 32 H 1.09008 * 109.47063 * 60.00179 * 1 2 3 33 33 H 0.96997 * 120.00389 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47181 * 60.00425 * 7 5 3 35 35 H 1.08998 * 109.47331 * 179.97438 * 7 5 3 36 36 H 1.09003 * 109.47192 * 300.00278 * 7 5 3 37 37 H 1.08999 * 109.99343 * 99.79340 * 9 8 5 38 38 H 1.08997 * 110.00040 * 338.45859 * 9 8 5 39 39 H 1.09000 * 110.97118 * 44.16894 * 12 10 9 40 40 H 1.08998 * 110.96852 * 167.93248 * 12 10 9 41 41 H 1.09001 * 110.36576 * 203.98246 * 13 12 10 42 42 H 1.08996 * 110.46502 * 81.69505 * 13 12 10 43 43 H 1.09000 * 109.46963 * 299.99769 * 17 15 14 44 44 H 1.09001 * 109.46905 * 60.00393 * 17 15 14 45 45 H 0.96994 * 119.99843 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.76613 * 243.58789 * 29 8 5 47 47 H 1.09004 * 109.75970 * 4.30747 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 1 4.0088 0.6536 0.8908 7 6 4.1564 0.4456 -1.2482 8 7 4.1356 2.5522 -0.0002 9 6 5.6013 2.5932 0.1201 10 6 5.9389 3.7764 1.0470 11 1 6.1899 4.6904 0.5087 12 6 7.0269 3.3121 2.0506 13 6 6.2099 2.4074 3.0058 14 7 4.9030 3.0770 3.1332 15 6 4.0531 2.9473 4.1712 16 8 2.9993 3.5477 4.1708 17 6 4.4123 2.0563 5.3323 18 16 3.0783 2.0920 6.5552 19 6 3.7439 0.9984 7.7659 20 1 4.7103 0.5425 7.6087 21 6 3.0267 0.7236 8.9221 22 7 1.8495 1.2804 9.1143 23 14 3.7319 -0.4363 10.2052 24 1 4.5353 0.3384 11.1848 25 1 2.6229 -1.1273 10.9107 26 1 4.5984 -1.4425 9.5400 27 6 4.6788 3.9075 1.9445 28 1 4.4848 4.9472 2.2080 29 6 3.5379 3.3231 1.1003 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.9500 -0.8400 0.0004 34 1 3.7935 0.9592 -2.1385 35 1 5.2463 0.4460 -1.2480 36 1 3.7930 -0.5821 -1.2481 37 1 6.0515 2.7477 -0.8604 38 1 5.9658 1.6629 0.5557 39 1 7.8063 2.7421 1.5450 40 1 7.4517 4.1613 2.5859 41 1 6.6993 2.3422 3.9776 42 1 6.0866 1.4132 2.5764 43 1 4.5519 1.0353 4.9772 44 1 5.3354 2.4112 5.7906 45 1 1.3485 1.0887 9.9224 46 1 2.9277 4.1306 0.6958 47 1 2.9214 2.6686 1.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186917406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:13 Heat of formation + Delta-G solvation = -79.051201 kcal Electronic energy + Delta-G solvation = -28781.987618 eV Core-core repulsion = 24897.091307 eV Total energy + Delta-G solvation = -3884.896310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20650 -40.81933 -39.44895 -36.96003 -35.75235 -34.62032 -33.77234 -32.66441 -31.15261 -29.13786 -28.47018 -27.75725 -27.57641 -25.00201 -23.85280 -22.84294 -21.28912 -21.18037 -20.44013 -19.51992 -18.39104 -18.26679 -17.48668 -17.20827 -16.91386 -16.65198 -16.58102 -16.21143 -16.01289 -15.48679 -15.18646 -14.91661 -14.76218 -14.68374 -14.43333 -14.00449 -13.88336 -13.60091 -13.54594 -13.27168 -13.19743 -13.18381 -12.94056 -12.91086 -12.85940 -12.68359 -12.59846 -12.32578 -12.05357 -11.86997 -11.74534 -11.64328 -11.17141 -10.99388 -10.79691 -10.32097 -10.19237 -9.87465 -9.27248 -8.73211 -8.37356 -6.17513 1.19402 1.40967 1.42217 1.49930 1.54007 1.56426 2.01724 2.12506 2.24208 2.89247 2.96875 3.13197 3.32431 3.54437 3.60111 3.71898 3.83814 4.00716 4.04957 4.09902 4.17482 4.22653 4.28482 4.35507 4.38383 4.39725 4.51394 4.53216 4.64208 4.73361 4.77029 4.85485 4.85875 4.89609 5.03504 5.10854 5.13881 5.23563 5.25615 5.37634 5.37906 5.39267 5.82748 6.01053 6.16492 6.35474 6.49975 7.03198 7.07169 7.21398 8.72140 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.003357 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.978673 B = 8338.942645 C = 9662.350403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.725 5.725 3 C 0.501 3.499 4 O -0.571 6.571 5 C 0.062 3.938 6 H 0.068 0.932 7 C -0.129 4.129 8 N -0.515 5.515 9 C 0.049 3.951 10 C -0.091 4.091 11 H 0.130 0.870 12 C -0.109 4.109 13 C 0.084 3.916 14 N -0.609 5.609 15 C 0.541 3.459 16 O -0.566 6.566 17 C -0.115 4.115 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 1.001 2.999 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.255 1.255 27 C 0.108 3.892 28 H 0.072 0.928 29 C 0.069 3.931 30 H 0.114 0.886 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.418 0.582 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.575 -5.733 -23.928 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.378 5.378 3 C 0.287 3.713 4 O -0.449 6.449 5 C -0.050 4.050 6 H 0.085 0.915 7 C -0.187 4.187 8 N -0.240 5.240 9 C -0.077 4.077 10 C -0.110 4.110 11 H 0.148 0.852 12 C -0.147 4.147 13 C -0.037 4.037 14 N -0.344 5.344 15 C 0.329 3.671 16 O -0.444 6.444 17 C -0.266 4.266 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.179 1.179 27 C 0.003 3.997 28 H 0.090 0.910 29 C -0.060 4.060 30 H 0.132 0.868 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 12.220 -3.905 -24.248 27.432 hybrid contribution 0.691 -1.526 2.028 2.631 sum 12.911 -5.431 -22.219 26.266 Atomic orbital electron populations 1.21607 0.79151 1.04183 1.00867 1.45716 1.08225 1.08658 1.75208 1.21164 0.91242 0.83750 0.75113 1.90721 1.71213 1.32952 1.50062 1.21899 0.90105 0.91324 1.01673 0.91454 1.21786 1.03198 0.99625 0.94052 1.63084 1.07311 1.09878 1.43759 1.23103 0.85663 0.97816 1.01161 1.23221 0.92300 1.00701 0.94778 0.85159 1.22838 0.96662 0.99929 0.95255 1.22768 0.81751 0.97099 1.02121 1.48457 1.20444 1.47234 1.18266 1.19899 0.82989 0.81502 0.82668 1.90712 1.25653 1.48373 1.79707 1.23272 1.04171 1.02141 0.97047 1.85713 1.26101 1.62826 1.18130 1.23178 1.07911 1.31822 1.06398 0.89786 1.26169 0.94868 0.98040 1.00025 1.70199 1.13487 1.43441 1.27777 0.84921 0.77977 0.77729 0.77144 1.19229 1.20279 1.17903 1.22592 0.97371 0.94617 0.85130 0.90950 1.22499 0.95588 0.97421 0.90452 0.86777 0.94968 0.92648 0.74567 0.92040 0.89004 0.89634 0.87149 0.91226 0.85614 0.89652 0.89556 0.90141 0.87815 0.87393 0.91959 0.92419 0.95920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 10.70 127.77 1.37 3.07 16 2 N -0.72 -14.61 5.61 -484.53 -2.72 -17.32 16 3 C 0.50 13.79 6.45 87.65 0.57 14.35 16 4 O -0.57 -21.80 14.18 -3.02 -0.04 -21.84 16 5 C 0.06 1.25 2.15 44.16 0.09 1.35 16 6 H 0.07 1.35 7.97 -2.39 -0.02 1.33 16 7 C -0.13 -1.44 9.07 71.98 0.65 -0.78 16 8 N -0.52 -11.67 4.85 -871.24 -4.23 -15.90 16 9 C 0.05 0.65 4.94 86.61 0.43 1.08 16 10 C -0.09 -1.31 4.33 -8.93 -0.04 -1.35 16 11 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 12 C -0.11 -1.15 6.35 31.96 0.20 -0.95 16 13 C 0.08 1.50 6.22 86.84 0.54 2.04 16 14 N -0.61 -17.87 2.99 -786.18 -2.35 -20.22 16 15 C 0.54 22.33 7.42 87.66 0.65 22.98 16 16 O -0.57 -29.44 15.72 -3.04 -0.05 -29.49 16 17 C -0.12 -4.85 5.15 71.24 0.37 -4.48 16 18 S -0.15 -8.93 20.57 -56.49 -1.16 -10.09 16 19 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 23 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 27 C 0.11 2.89 3.59 45.89 0.16 3.05 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 C 0.07 2.20 4.64 86.44 0.40 2.60 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 33 H 0.42 5.09 8.25 -92.71 -0.76 4.32 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.63 7.25 -2.39 -0.02 0.61 16 36 H 0.08 0.58 7.56 -2.39 -0.02 0.56 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.72 5.83 -2.39 -0.01 0.71 16 39 H 0.13 0.48 8.08 -2.39 -0.02 0.46 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.50 7.45 -2.39 -0.02 1.48 16 42 H 0.08 1.21 7.19 -2.39 -0.02 1.20 16 43 H 0.10 3.94 8.14 -2.40 -0.02 3.93 16 44 H 0.11 4.08 7.84 -2.39 -0.02 4.06 16 45 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.06 2.14 7.94 -2.39 -0.02 2.12 16 47 H 0.02 0.91 5.62 -2.38 -0.01 0.90 16 Total: -1.00 -91.61 384.37 -1.51 -93.12 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.21 Total: 19.42 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.51 Total: 13.37 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -9.00 Total: -110.02 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.09 Total: -51.33 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -91.61 -1.51 -93.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.065 kcal (2) G-P(sol) polarization free energy of solvation -91.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds