Wall clock time and date at job start Wed Apr 1 2020 00:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34767 * 120.00655 * 2 1 4 4 O 1.21284 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00449 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.46790 * 60.00366 * 5 3 2 7 7 C 1.52995 * 109.47138 * 300.00133 * 5 3 2 8 8 N 1.46897 * 109.46945 * 180.02562 * 5 3 2 9 9 C 1.47126 * 111.00148 * 298.43612 * 8 5 3 10 10 C 1.54039 * 106.79242 * 219.12514 * 9 8 5 11 11 H 1.09000 * 114.10231 * 263.22536 * 10 9 8 12 12 C 1.55127 * 108.24289 * 135.89109 * 10 9 8 13 13 C 1.54851 * 101.76969 * 286.04917 * 12 10 9 14 14 N 1.47407 * 104.81250 * 322.81064 * 13 12 10 15 15 C 1.34766 * 125.59254 * 204.57504 * 14 13 12 16 16 O 1.21287 * 119.99986 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00293 * 0.02562 * 15 14 13 18 18 S 1.81005 * 109.47470 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00100 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00134 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99649 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00513 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99641 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47256 * 89.99560 * 23 21 19 25 25 H 1.48507 * 109.46972 * 210.00026 * 23 21 19 26 26 H 1.48505 * 109.47319 * 329.99618 * 23 21 19 27 27 C 1.46728 * 108.81384 * 24.57617 * 14 13 12 28 28 H 1.09004 * 111.30124 * 235.58127 * 27 14 13 29 29 C 1.47066 * 110.99543 * 176.77368 * 8 5 3 30 30 H 1.09002 * 109.46985 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47222 * 300.00595 * 1 2 3 33 33 H 0.97008 * 119.99437 * 179.97438 * 2 1 3 34 34 H 1.09008 * 109.47280 * 64.14029 * 7 5 3 35 35 H 1.08996 * 109.47401 * 184.14379 * 7 5 3 36 36 H 1.09008 * 109.47430 * 304.14643 * 7 5 3 37 37 H 1.08995 * 109.99608 * 338.45839 * 9 8 5 38 38 H 1.09001 * 109.98929 * 99.79544 * 9 8 5 39 39 H 1.09001 * 110.97666 * 167.92715 * 12 10 9 40 40 H 1.09002 * 110.96962 * 44.16683 * 12 10 9 41 41 H 1.09003 * 110.37627 * 203.97778 * 13 12 10 42 42 H 1.08996 * 110.46632 * 81.68904 * 13 12 10 43 43 H 1.08998 * 109.46789 * 299.99498 * 17 15 14 44 44 H 1.08994 * 109.47594 * 59.99731 * 17 15 14 45 45 H 0.96991 * 120.00235 * 180.02562 * 22 21 19 46 46 H 1.09007 * 109.75877 * 243.58214 * 29 8 5 47 47 H 1.08994 * 109.75857 * 4.30314 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1670 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6460 1.1670 0.0006 6 1 4.0095 0.6530 -0.8892 7 6 4.1554 0.4460 1.2501 8 7 4.1356 2.5519 0.0011 9 6 3.6952 3.2674 -1.2067 10 6 4.8736 4.1529 -1.6540 11 1 4.8090 5.1858 -1.3121 12 6 5.0244 4.0201 -3.1922 13 6 5.6435 2.6072 -3.3280 14 7 6.5654 2.4881 -2.1840 15 6 7.6405 1.6776 -2.1241 16 8 8.3327 1.6611 -1.1283 17 6 7.9833 0.7928 -3.2947 18 16 9.4688 -0.1675 -2.9107 19 6 9.6345 -1.0856 -4.4054 20 1 8.9212 -0.9494 -5.2047 21 6 10.6813 -1.9848 -4.5550 22 7 11.5499 -2.1519 -3.5803 23 14 10.8575 -2.9576 -6.1400 24 1 11.7018 -2.1974 -7.0962 25 1 11.4952 -4.2668 -5.8489 26 1 9.5154 -3.1821 -6.7348 27 6 6.1207 3.3968 -1.1213 28 1 6.9164 4.0811 -0.8266 29 6 5.6037 2.5918 0.0789 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9499 -0.8402 0.0004 34 1 3.8539 -0.6009 1.2139 35 1 5.2429 0.5098 1.2885 36 1 3.7324 0.9153 2.1384 37 1 3.4459 2.5541 -1.9923 38 1 2.8289 3.8878 -0.9772 39 1 5.6988 4.7808 -3.5853 40 1 4.0534 4.0695 -3.6851 41 1 6.1907 2.5213 -4.2668 42 1 4.8675 1.8440 -3.2709 43 1 7.1532 0.1148 -3.4930 44 1 8.1670 1.4091 -4.1747 45 1 12.2815 -2.7800 -3.6850 46 1 5.9105 3.0750 1.0066 47 1 6.0023 1.5780 0.0420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186917407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:16 Heat of formation + Delta-G solvation = -49.526814 kcal Electronic energy + Delta-G solvation = -28523.599716 eV Core-core repulsion = 24639.983679 eV Total energy + Delta-G solvation = -3883.616037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19267 -39.81236 -38.11147 -36.04426 -34.86654 -32.81825 -32.46916 -31.49472 -29.98211 -28.15726 -27.59426 -26.71836 -25.52332 -24.17199 -23.08239 -21.67370 -20.49001 -20.14543 -19.04660 -17.87211 -17.54034 -16.86805 -16.66419 -15.99142 -15.79642 -15.26503 -15.04364 -14.84738 -14.74958 -14.48585 -13.96024 -13.91186 -13.72025 -13.64563 -13.02326 -12.86750 -12.73170 -12.64333 -12.61402 -12.36947 -12.36631 -12.00700 -11.85699 -11.69524 -11.49763 -11.23692 -11.09948 -11.05914 -10.96926 -10.87726 -10.78036 -9.92285 -9.85278 -9.44112 -9.41571 -9.10527 -8.72661 -8.29584 -8.28011 -6.54771 -6.25569 -3.96544 2.42565 2.81315 2.87245 2.99741 3.19140 3.22775 3.27031 3.56012 3.75537 4.11406 4.17014 4.37940 4.42772 4.51582 4.75122 4.84916 4.90544 4.92761 5.00207 5.04842 5.06763 5.09682 5.17475 5.27810 5.33164 5.36881 5.44513 5.46574 5.53809 5.59408 5.60517 5.70252 5.77157 5.85370 5.87832 5.95431 5.98941 6.00651 6.08180 6.11437 6.43748 6.76409 6.83616 7.19887 7.55491 7.62763 7.99464 8.31170 8.50510 9.19742 10.81824 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.002874 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.080436 B = 9739.432767 C =10549.384039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.739 5.739 3 C 0.519 3.481 4 O -0.522 6.522 5 C 0.061 3.939 6 H 0.067 0.933 7 C -0.146 4.146 8 N -0.506 5.506 9 C 0.060 3.940 10 C -0.107 4.107 11 H 0.109 0.891 12 C -0.126 4.126 13 C 0.099 3.901 14 N -0.621 5.621 15 C 0.548 3.452 16 O -0.512 6.512 17 C -0.147 4.147 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.123 3.877 28 H 0.092 0.908 29 C 0.035 3.965 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.088 0.912 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.203 7.957 4.554 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.392 5.392 3 C 0.305 3.695 4 O -0.397 6.397 5 C -0.051 4.051 6 H 0.085 0.915 7 C -0.204 4.204 8 N -0.230 5.230 9 C -0.068 4.068 10 C -0.127 4.127 11 H 0.127 0.873 12 C -0.165 4.165 13 C -0.024 4.024 14 N -0.358 5.358 15 C 0.336 3.664 16 O -0.386 6.386 17 C -0.298 4.298 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C 0.018 3.982 28 H 0.110 0.890 29 C -0.093 4.093 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.601 8.766 6.544 23.325 hybrid contribution -0.174 -1.569 -2.982 3.374 sum -20.775 7.197 3.562 22.273 Atomic orbital electron populations 1.21507 0.79545 1.02165 1.02247 1.45816 1.07764 1.08838 1.76766 1.20536 0.89726 0.83628 0.75618 1.90682 1.70062 1.31018 1.47893 1.21776 0.91640 0.91539 1.00179 0.91543 1.21900 1.02932 0.99195 0.96357 1.63047 1.09698 1.11298 1.38999 1.22826 0.97637 0.96321 0.89981 1.23201 0.93763 1.00141 0.95594 0.87305 1.22824 1.01666 0.96643 0.95325 1.22304 0.92749 0.96985 0.90350 1.48562 1.27860 1.42373 1.17036 1.20036 0.78256 0.79112 0.88971 1.90715 1.48922 1.65997 1.32936 1.23515 1.06387 1.01180 0.98670 1.85391 1.26021 1.47769 1.24029 1.22848 1.15906 1.27533 1.02116 0.90989 1.24987 0.94744 0.96280 0.97511 1.70008 1.13974 1.34670 1.31569 0.86175 0.78450 0.79007 0.81910 1.20239 1.20718 1.19706 1.22318 0.96278 0.91414 0.88147 0.88970 1.23066 0.86146 1.01499 0.98566 0.92332 0.90689 0.92257 0.76419 0.91661 0.90508 0.91205 0.93725 0.88954 0.90140 0.89666 0.90091 0.91954 0.89560 0.89351 0.92144 0.89418 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.84 0.64 1.23 16 2 N -0.74 -5.81 5.62 -67.08 -0.38 -6.19 16 3 C 0.52 5.72 6.84 -10.99 -0.08 5.64 16 4 O -0.52 -7.41 14.57 5.55 0.08 -7.33 16 5 C 0.06 0.65 2.08 -68.87 -0.14 0.51 16 6 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 7 C -0.15 -1.38 8.93 37.16 0.33 -1.05 16 8 N -0.51 -5.95 4.77 -226.73 -1.08 -7.03 16 9 C 0.06 0.65 4.62 -3.16 -0.01 0.63 16 10 C -0.11 -1.03 4.33 -87.76 -0.38 -1.41 16 11 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.13 -1.08 6.34 -24.63 -0.16 -1.23 16 13 C 0.10 1.08 6.22 -2.57 -0.02 1.07 16 14 N -0.62 -8.75 2.99 -162.43 -0.48 -9.24 16 15 C 0.55 10.24 7.42 -10.99 -0.08 10.16 16 16 O -0.51 -11.39 15.73 5.55 0.09 -11.30 16 17 C -0.15 -2.96 5.15 36.00 0.19 -2.77 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 23 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.12 1.52 3.59 -66.36 -0.24 1.29 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 C 0.04 0.44 5.61 -3.48 -0.02 0.42 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 2.23 8.33 -40.82 -0.34 1.89 16 34 H 0.06 0.48 7.68 -51.92 -0.40 0.08 16 35 H 0.08 0.82 6.20 -51.93 -0.32 0.50 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.04 0.49 5.96 -51.93 -0.31 0.18 16 38 H 0.09 1.10 7.28 -51.93 -0.38 0.72 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.08 0.86 7.45 -51.93 -0.39 0.48 16 42 H 0.06 0.65 7.19 -51.93 -0.37 0.28 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.67 7.84 -51.92 -0.41 1.26 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.07 1.05 5.31 -51.93 -0.28 0.78 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -35.55 383.94 -9.64 -45.19 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.38 Total: 1.22 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.23 Total: 1.70 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -1.21 Total: -47.57 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.55 -9.64 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.338 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds