Wall clock time and date at job start Wed Apr 1 2020 00:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34767 * 120.00655 * 2 1 4 4 O 1.21284 * 119.99890 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00449 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.46790 * 60.00366 * 5 3 2 7 7 C 1.52995 * 109.47138 * 300.00133 * 5 3 2 8 8 N 1.46897 * 109.46945 * 180.02562 * 5 3 2 9 9 C 1.47126 * 111.00148 * 298.43612 * 8 5 3 10 10 C 1.54039 * 106.79242 * 219.12514 * 9 8 5 11 11 H 1.09000 * 114.10231 * 263.22536 * 10 9 8 12 12 C 1.55127 * 108.24289 * 135.89109 * 10 9 8 13 13 C 1.54851 * 101.76969 * 286.04917 * 12 10 9 14 14 N 1.47407 * 104.81250 * 322.81064 * 13 12 10 15 15 C 1.34766 * 125.59254 * 204.57504 * 14 13 12 16 16 O 1.21287 * 119.99986 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00293 * 0.02562 * 15 14 13 18 18 S 1.81005 * 109.47470 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00100 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00134 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99649 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00513 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99641 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47256 * 89.99560 * 23 21 19 25 25 H 1.48507 * 109.46972 * 210.00026 * 23 21 19 26 26 H 1.48505 * 109.47319 * 329.99618 * 23 21 19 27 27 C 1.46728 * 108.81384 * 24.57617 * 14 13 12 28 28 H 1.09004 * 111.30124 * 235.58127 * 27 14 13 29 29 C 1.47066 * 110.99543 * 176.77368 * 8 5 3 30 30 H 1.09002 * 109.46985 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47222 * 300.00595 * 1 2 3 33 33 H 0.97008 * 119.99437 * 179.97438 * 2 1 3 34 34 H 1.09008 * 109.47280 * 64.14029 * 7 5 3 35 35 H 1.08996 * 109.47401 * 184.14379 * 7 5 3 36 36 H 1.09008 * 109.47430 * 304.14643 * 7 5 3 37 37 H 1.08995 * 109.99608 * 338.45839 * 9 8 5 38 38 H 1.09001 * 109.98929 * 99.79544 * 9 8 5 39 39 H 1.09001 * 110.97666 * 167.92715 * 12 10 9 40 40 H 1.09002 * 110.96962 * 44.16683 * 12 10 9 41 41 H 1.09003 * 110.37627 * 203.97778 * 13 12 10 42 42 H 1.08996 * 110.46632 * 81.68904 * 13 12 10 43 43 H 1.08998 * 109.46789 * 299.99498 * 17 15 14 44 44 H 1.08994 * 109.47594 * 59.99731 * 17 15 14 45 45 H 0.96991 * 120.00235 * 180.02562 * 22 21 19 46 46 H 1.09007 * 109.75877 * 243.58214 * 29 8 5 47 47 H 1.08994 * 109.75857 * 4.30314 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1670 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6460 1.1670 0.0006 6 1 4.0095 0.6530 -0.8892 7 6 4.1554 0.4460 1.2501 8 7 4.1356 2.5519 0.0011 9 6 3.6952 3.2674 -1.2067 10 6 4.8736 4.1529 -1.6540 11 1 4.8090 5.1858 -1.3121 12 6 5.0244 4.0201 -3.1922 13 6 5.6435 2.6072 -3.3280 14 7 6.5654 2.4881 -2.1840 15 6 7.6405 1.6776 -2.1241 16 8 8.3327 1.6611 -1.1283 17 6 7.9833 0.7928 -3.2947 18 16 9.4688 -0.1675 -2.9107 19 6 9.6345 -1.0856 -4.4054 20 1 8.9212 -0.9494 -5.2047 21 6 10.6813 -1.9848 -4.5550 22 7 11.5499 -2.1519 -3.5803 23 14 10.8575 -2.9576 -6.1400 24 1 11.7018 -2.1974 -7.0962 25 1 11.4952 -4.2668 -5.8489 26 1 9.5154 -3.1821 -6.7348 27 6 6.1207 3.3968 -1.1213 28 1 6.9164 4.0811 -0.8266 29 6 5.6037 2.5918 0.0789 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9499 -0.8402 0.0004 34 1 3.8539 -0.6009 1.2139 35 1 5.2429 0.5098 1.2885 36 1 3.7324 0.9153 2.1384 37 1 3.4459 2.5541 -1.9923 38 1 2.8289 3.8878 -0.9772 39 1 5.6988 4.7808 -3.5853 40 1 4.0534 4.0695 -3.6851 41 1 6.1907 2.5213 -4.2668 42 1 4.8675 1.8440 -3.2709 43 1 7.1532 0.1148 -3.4930 44 1 8.1670 1.4091 -4.1747 45 1 12.2815 -2.7800 -3.6850 46 1 5.9105 3.0750 1.0066 47 1 6.0023 1.5780 0.0420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186917407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:15 Heat of formation + Delta-G solvation = -76.411009 kcal Electronic energy + Delta-G solvation = -28524.765502 eV Core-core repulsion = 24639.983679 eV Total energy + Delta-G solvation = -3884.781823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18764 -40.78056 -39.40240 -37.03692 -35.65146 -34.60048 -33.87572 -32.40400 -31.29632 -29.33040 -28.41132 -27.68365 -27.48164 -25.01274 -24.10669 -22.62807 -21.36937 -21.02839 -20.36345 -19.52663 -18.66037 -18.02811 -17.51948 -17.18358 -16.89395 -16.72418 -16.40711 -16.23475 -15.95034 -15.47482 -15.28881 -14.90189 -14.86421 -14.58545 -14.43638 -13.98371 -13.78947 -13.66493 -13.52544 -13.26404 -13.18065 -13.13392 -13.10810 -12.90500 -12.84718 -12.62350 -12.59609 -12.44632 -12.04392 -11.86558 -11.73270 -11.65176 -11.15540 -10.96411 -10.80956 -10.29781 -10.13951 -9.87213 -9.27573 -8.68905 -8.35859 -6.14331 1.21864 1.41628 1.43695 1.52817 1.54817 1.57231 2.02444 2.12019 2.25890 2.89617 2.98397 3.14270 3.33533 3.52957 3.57388 3.73571 3.83671 3.93643 4.01085 4.07284 4.14210 4.19259 4.23423 4.38340 4.40289 4.44773 4.48153 4.58346 4.62524 4.64672 4.69652 4.81986 4.85228 4.91985 4.94125 5.04670 5.11860 5.15798 5.19115 5.36915 5.40414 5.42809 5.86276 5.92815 6.18402 6.35472 6.51148 7.05413 7.08732 7.21820 8.73289 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.002874 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.080436 B = 9739.432767 C =10549.384039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.519 3.481 4 O -0.558 6.558 5 C 0.061 3.939 6 H 0.065 0.935 7 C -0.142 4.142 8 N -0.514 5.514 9 C 0.064 3.936 10 C -0.094 4.094 11 H 0.129 0.871 12 C -0.114 4.114 13 C 0.088 3.912 14 N -0.609 5.609 15 C 0.548 3.452 16 O -0.558 6.558 17 C -0.120 4.120 18 S -0.144 6.144 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.258 1.258 27 C 0.116 3.884 28 H 0.086 0.914 29 C 0.043 3.957 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.415 0.585 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.427 7.978 2.562 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.305 3.695 4 O -0.436 6.436 5 C -0.051 4.051 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.239 5.239 9 C -0.063 4.063 10 C -0.113 4.113 11 H 0.147 0.853 12 C -0.152 4.152 13 C -0.034 4.034 14 N -0.344 5.344 15 C 0.336 3.664 16 O -0.436 6.436 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.181 1.181 27 C 0.011 3.989 28 H 0.104 0.896 29 C -0.085 4.085 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.251 0.749 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.882 8.782 4.536 24.926 hybrid contribution 0.388 -1.529 -2.297 2.787 sum -22.494 7.254 2.238 23.740 Atomic orbital electron populations 1.21652 0.78426 1.04138 1.01488 1.45777 1.08538 1.08515 1.75118 1.20540 0.89657 0.83952 0.75352 1.90666 1.70590 1.32362 1.49936 1.21800 0.91784 0.91048 1.00491 0.91715 1.21872 1.01768 1.00516 0.95770 1.63040 1.08854 1.12182 1.39790 1.22784 0.97700 0.96265 0.89558 1.23219 0.91216 1.00435 0.96447 0.85340 1.22832 1.02962 0.95040 0.94352 1.22642 0.92411 0.99083 0.89223 1.48455 1.26545 1.40807 1.18599 1.19737 0.79191 0.79603 0.87870 1.90697 1.50974 1.67653 1.34249 1.23304 1.03105 1.00897 0.99821 1.85564 1.30899 1.49749 1.25511 1.23176 1.16364 1.27717 1.02167 0.90043 1.26109 0.94143 0.97335 1.01412 1.70171 1.14770 1.35632 1.34105 0.84969 0.79065 0.77155 0.76893 1.19371 1.20255 1.18139 1.22501 0.97326 0.91217 0.87853 0.89570 1.22918 0.86767 1.00139 0.98695 0.93029 0.87372 0.93089 0.74926 0.89357 0.92112 0.91524 0.93652 0.89733 0.89076 0.87185 0.89384 0.91066 0.87946 0.87755 0.91951 0.89619 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.70 127.77 1.37 2.34 16 2 N -0.73 -10.16 5.62 -484.54 -2.72 -12.88 16 3 C 0.52 10.89 6.84 87.66 0.60 11.49 16 4 O -0.56 -15.47 14.57 -3.04 -0.04 -15.52 16 5 C 0.06 1.26 2.08 44.17 0.09 1.35 16 6 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 7 C -0.14 -2.65 8.93 71.98 0.64 -2.01 16 8 N -0.51 -11.83 4.77 -871.23 -4.16 -15.99 16 9 C 0.06 1.28 4.62 86.61 0.40 1.68 16 10 C -0.09 -1.58 4.33 -8.94 -0.04 -1.62 16 11 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 12 C -0.11 -1.55 6.34 31.96 0.20 -1.35 16 13 C 0.09 1.69 6.22 86.84 0.54 2.23 16 14 N -0.61 -16.57 2.99 -786.21 -2.35 -18.92 16 15 C 0.55 20.59 7.42 87.66 0.65 21.24 16 16 O -0.56 -25.75 15.73 -3.05 -0.05 -25.79 16 17 C -0.12 -4.80 5.15 71.24 0.37 -4.43 16 18 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 19 C -0.55 -30.83 9.50 67.96 0.65 -30.18 16 20 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 21 C 0.01 0.84 5.49 84.86 0.47 1.31 16 22 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 23 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 27 C 0.12 2.76 3.59 45.89 0.16 2.93 16 28 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 29 C 0.04 1.09 5.61 86.44 0.49 1.58 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.41 3.68 8.33 -92.70 -0.77 2.91 16 34 H 0.09 1.19 7.68 -2.38 -0.02 1.17 16 35 H 0.06 1.35 6.20 -2.39 -0.01 1.33 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.05 0.90 5.96 -2.39 -0.01 0.88 16 38 H 0.08 1.89 7.28 -2.39 -0.02 1.87 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.06 8.08 -2.39 -0.02 1.04 16 41 H 0.09 1.61 7.45 -2.39 -0.02 1.59 16 42 H 0.07 1.29 7.19 -2.39 -0.02 1.27 16 43 H 0.10 3.73 8.14 -2.40 -0.02 3.71 16 44 H 0.10 3.81 7.84 -2.40 -0.02 3.79 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.05 1.51 5.31 -2.39 -0.01 1.50 16 Total: -1.00 -79.96 383.94 -1.37 -81.33 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.21 Total: 20.42 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.59 Total: 6.57 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -8.94 Total: -102.84 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.09 Total: -41.31 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -79.96 -1.37 -81.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186917407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.920 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds