Wall clock time and date at job start Wed Apr 1 2020 00:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81399 * 103.00134 * 2 1 4 4 H 1.08998 * 109.46558 * 55.00251 * 3 2 1 5 5 C 1.52994 * 109.47384 * 295.00134 * 3 2 1 6 6 C 1.50705 * 109.47131 * 175.00017 * 3 2 1 7 7 O 1.21276 * 119.99896 * 25.00332 * 6 3 2 8 8 N 1.34779 * 119.99894 * 205.00595 * 6 3 2 9 9 C 1.47363 * 125.57419 * 359.69031 * 8 6 3 10 10 C 1.55087 * 104.66003 * 154.73048 * 9 8 6 11 11 C 1.54934 * 101.78937 * 37.42440 * 10 9 8 12 12 H 1.09009 * 113.37155 * 87.69069 * 11 10 9 13 13 C 1.55778 * 108.56043 * 215.18598 * 11 10 9 14 14 N 1.47860 * 107.26393 * 113.93862 * 13 11 10 15 15 C 1.46900 * 110.99990 * 212.11964 * 14 13 11 16 16 C 1.50704 * 109.47108 * 300.91674 * 15 14 13 17 17 O 1.21297 * 119.99967 * 354.03078 * 16 15 14 18 18 N 1.34774 * 120.00036 * 174.02242 * 16 15 14 19 19 C 1.37097 * 119.99964 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00107 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99779 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99747 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00246 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47028 * 89.99882 * 23 21 19 25 25 H 1.48492 * 109.47124 * 209.99811 * 23 21 19 26 26 H 1.48497 * 109.47057 * 330.00205 * 23 21 19 27 27 C 1.48407 * 105.77821 * 332.60897 * 14 13 11 28 28 C 1.46850 * 125.57436 * 180.02562 * 8 6 3 29 29 H 1.09005 * 112.02013 * 59.34169 * 28 8 6 30 30 H 1.09003 * 109.47100 * 299.99663 * 1 2 3 31 31 H 1.08999 * 109.47398 * 59.99831 * 1 2 3 32 32 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47438 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.46721 * 59.99665 * 5 3 2 35 35 H 1.09000 * 109.47134 * 300.00108 * 5 3 2 36 36 H 1.09004 * 110.37123 * 273.66199 * 9 8 6 37 37 H 1.08997 * 110.37641 * 36.00441 * 9 8 6 38 38 H 1.09001 * 111.16159 * 279.24023 * 10 9 8 39 39 H 1.08998 * 110.86474 * 155.48071 * 10 9 8 40 40 H 1.09006 * 110.48759 * 354.15823 * 13 11 10 41 41 H 1.08998 * 109.18696 * 233.00018 * 13 11 10 42 42 H 1.08996 * 109.47192 * 60.91763 * 15 14 13 43 43 H 1.09000 * 109.46965 * 180.92312 * 15 14 13 44 44 H 0.97001 * 119.99933 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99871 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.59002 * 280.54004 * 27 14 13 47 47 H 1.09003 * 110.71786 * 157.68196 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2540 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9385 0.1238 7 8 4.4584 1.0531 -0.2409 8 7 4.2217 3.0755 0.6400 9 6 3.4348 4.2279 1.1137 10 6 4.3491 4.9268 2.1533 11 6 5.7477 4.7593 1.5080 12 1 6.0037 5.5619 0.8162 13 6 6.7950 4.5491 2.6419 14 7 7.3226 3.1749 2.5027 15 6 7.6731 2.6103 3.8128 16 6 8.7103 3.4811 4.4739 17 8 9.1968 4.4119 3.8671 18 7 9.0972 3.2258 5.7394 19 6 10.0404 4.0183 6.3409 20 1 10.4730 4.8475 5.8009 21 6 10.4396 3.7547 7.6455 22 7 11.3441 4.5141 8.2220 23 14 9.6919 2.3200 8.5793 24 1 10.5061 1.1001 8.3472 25 1 9.6701 2.6318 10.0310 26 1 8.3050 2.0877 8.1020 27 6 6.2404 2.3905 1.8578 28 6 5.6493 3.3712 0.8159 29 1 6.1920 3.3430 -0.1290 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9876 3.4637 -1.3071 34 1 0.6635 2.2778 -1.3968 35 1 2.2354 1.9150 -2.1491 36 1 3.2126 4.9015 0.2860 37 1 2.5129 3.8894 1.5866 38 1 4.3030 4.4236 3.1191 39 1 4.0894 5.9807 2.2523 40 1 6.3283 4.6701 3.6196 41 1 7.6029 5.2709 2.5217 42 1 6.7825 2.5664 4.4395 43 1 8.0738 1.6053 3.6798 44 1 8.7084 2.4812 6.2245 45 1 11.6225 4.3303 9.1328 46 1 5.4840 2.1070 2.5897 47 1 6.6457 1.5066 1.3651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186925017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:04 Heat of formation + Delta-G solvation = -40.832686 kcal Electronic energy + Delta-G solvation = -28041.735952 eV Core-core repulsion = 24158.496920 eV Total energy + Delta-G solvation = -3883.239031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.97053 -39.07165 -38.05532 -35.81579 -33.99073 -33.70070 -31.99986 -31.65140 -30.26964 -29.23721 -27.62260 -26.75246 -25.15430 -24.09631 -23.09576 -21.23944 -20.58008 -19.58552 -19.22069 -18.17976 -17.72556 -16.99775 -16.42853 -15.96956 -15.74172 -15.27700 -14.94842 -14.84101 -14.66343 -14.32406 -14.19859 -13.95980 -13.87846 -13.44436 -13.28707 -13.16122 -13.01332 -12.72848 -12.66884 -12.54713 -12.37027 -12.27723 -12.15426 -11.88177 -11.84775 -11.36987 -11.13127 -10.99207 -10.87289 -10.80100 -10.59555 -10.25114 -10.10980 -9.97853 -9.55488 -8.99694 -8.56892 -8.18972 -8.05304 -8.03978 -6.31398 -3.82709 1.03089 2.08321 2.33317 2.60635 3.02427 3.07521 3.15255 3.73525 3.86317 4.01146 4.10304 4.19105 4.28485 4.36547 4.44352 4.55937 4.66787 4.70890 4.77905 4.81863 4.94755 4.98976 5.05562 5.09438 5.17329 5.21107 5.27458 5.29294 5.36081 5.53499 5.57303 5.58821 5.73835 5.78414 5.80301 5.90050 5.95565 6.00408 6.16670 6.43166 7.05979 7.09618 7.16868 7.58069 7.81801 8.13814 8.59777 8.94751 9.42136 9.82625 10.81645 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002392 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.102502 B =11704.688755 C =12491.928957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.188 6.188 3 C -0.091 4.091 4 H 0.105 0.895 5 C -0.141 4.141 6 C 0.549 3.451 7 O -0.512 6.512 8 N -0.610 5.610 9 C 0.098 3.902 10 C -0.129 4.129 11 C -0.106 4.106 12 H 0.105 0.895 13 C 0.052 3.948 14 N -0.490 5.490 15 C 0.035 3.965 16 C 0.452 3.548 17 O -0.560 6.560 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.032 3.968 28 C 0.140 3.860 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.044 0.956 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.023 -3.547 -15.434 30.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.038 5.962 3 C -0.222 4.222 4 H 0.123 0.877 5 C -0.200 4.200 6 C 0.334 3.666 7 O -0.386 6.386 8 N -0.345 5.345 9 C -0.025 4.025 10 C -0.167 4.167 11 C -0.126 4.126 12 H 0.123 0.877 13 C -0.076 4.076 14 N -0.214 5.214 15 C -0.097 4.097 16 C 0.238 3.762 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.097 4.097 28 C 0.037 3.963 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.022 -4.317 -16.176 29.281 hybrid contribution -2.193 -0.074 1.638 2.739 sum -26.215 -4.391 -14.539 30.297 Atomic orbital electron populations 1.23553 0.95590 1.06775 1.04886 1.87532 1.04945 1.05897 1.97838 1.23323 0.97111 0.98407 1.03408 0.87670 1.21974 1.01869 1.01151 0.94991 1.19263 0.88641 0.81164 0.77485 1.90774 1.60127 1.39939 1.47781 1.48449 1.07749 1.16038 1.62287 1.22492 0.95141 0.87560 0.97329 1.22987 0.94082 1.01583 0.98076 1.23465 0.95241 0.96315 0.97575 0.87689 1.23258 0.96752 0.92296 0.95299 1.64508 1.35253 1.01748 1.19910 1.22121 0.98066 0.99537 0.89943 1.19596 0.86413 0.87693 0.82520 1.90544 1.58080 1.32043 1.63483 1.42214 1.38820 1.29480 1.12540 1.19421 1.15448 1.11371 0.96984 0.86243 1.25037 0.96754 0.97818 0.96561 1.69625 1.29994 1.38223 1.14286 0.86679 0.79362 0.82918 0.80475 1.19553 1.20196 1.19586 1.23502 0.92871 0.97360 0.95944 1.22484 0.80188 0.94533 0.99100 0.88445 0.90537 0.90349 0.87701 0.91177 0.91242 0.90448 0.90797 0.90656 0.90328 0.89274 0.93500 0.88070 0.93464 0.88826 0.79716 0.91625 0.93812 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 10.45 101.05 1.06 0.31 16 2 S -0.19 -1.83 21.10 -107.50 -2.27 -4.10 16 3 C -0.09 -0.75 2.68 -27.88 -0.07 -0.82 16 4 H 0.11 0.67 6.68 -51.92 -0.35 0.32 16 5 C -0.14 -0.86 9.08 37.15 0.34 -0.52 16 6 C 0.55 6.36 6.77 -10.98 -0.07 6.28 16 7 O -0.51 -8.03 16.11 5.56 0.09 -7.94 16 8 N -0.61 -6.18 2.97 -161.34 -0.48 -6.66 16 9 C 0.10 0.66 6.71 -2.47 -0.02 0.65 16 10 C -0.13 -1.04 6.40 -24.61 -0.16 -1.19 16 11 C -0.11 -1.14 4.14 -86.83 -0.36 -1.50 16 12 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 13 C 0.05 0.78 4.98 -1.81 -0.01 0.77 16 14 N -0.49 -8.09 5.12 -230.93 -1.18 -9.27 16 15 C 0.04 0.61 5.30 -4.97 -0.03 0.59 16 16 C 0.45 10.29 7.40 -10.98 -0.08 10.21 16 17 O -0.56 -14.74 14.08 5.54 0.08 -14.66 16 18 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 19 C -0.30 -8.56 10.16 -14.93 -0.15 -8.72 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 23 Si 0.88 19.48 27.74 -169.99 -4.72 14.76 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 27 C 0.03 0.45 5.56 -2.04 -0.01 0.44 16 28 C 0.14 1.67 3.80 -65.50 -0.25 1.43 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.32 7.14 -51.92 -0.37 -0.05 16 32 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.30 6.92 -51.93 -0.36 -0.06 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.39 6.77 -51.93 -0.35 0.04 16 38 H 0.08 0.72 7.51 -51.93 -0.39 0.33 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.72 6.95 -51.93 -0.36 0.36 16 41 H 0.10 1.81 6.96 -51.93 -0.36 1.45 16 42 H 0.05 0.74 7.99 -51.93 -0.42 0.32 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -34.78 383.50 -9.28 -44.05 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.38 Total: 8.22 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.09 Total: 8.97 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.94 Total: -55.08 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.17 Total: -22.60 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.72 Total: 14.76 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.27 Total: -4.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.78 -9.28 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186925017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.220 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds