Wall clock time and date at job start Wed Apr 1 2020 00:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81399 * 103.00134 * 2 1 4 4 H 1.08998 * 109.46558 * 55.00251 * 3 2 1 5 5 C 1.52994 * 109.47384 * 295.00134 * 3 2 1 6 6 C 1.50705 * 109.47131 * 175.00017 * 3 2 1 7 7 O 1.21276 * 119.99896 * 25.00332 * 6 3 2 8 8 N 1.34779 * 119.99894 * 205.00595 * 6 3 2 9 9 C 1.47363 * 125.57419 * 359.69031 * 8 6 3 10 10 C 1.55087 * 104.66003 * 154.73048 * 9 8 6 11 11 C 1.54934 * 101.78937 * 37.42440 * 10 9 8 12 12 H 1.09009 * 113.37155 * 87.69069 * 11 10 9 13 13 C 1.55778 * 108.56043 * 215.18598 * 11 10 9 14 14 N 1.47860 * 107.26393 * 113.93862 * 13 11 10 15 15 C 1.46900 * 110.99990 * 212.11964 * 14 13 11 16 16 C 1.50704 * 109.47108 * 300.91674 * 15 14 13 17 17 O 1.21297 * 119.99967 * 354.03078 * 16 15 14 18 18 N 1.34774 * 120.00036 * 174.02242 * 16 15 14 19 19 C 1.37097 * 119.99964 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00107 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99779 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99747 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00246 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47028 * 89.99882 * 23 21 19 25 25 H 1.48492 * 109.47124 * 209.99811 * 23 21 19 26 26 H 1.48497 * 109.47057 * 330.00205 * 23 21 19 27 27 C 1.48407 * 105.77821 * 332.60897 * 14 13 11 28 28 C 1.46850 * 125.57436 * 180.02562 * 8 6 3 29 29 H 1.09005 * 112.02013 * 59.34169 * 28 8 6 30 30 H 1.09003 * 109.47100 * 299.99663 * 1 2 3 31 31 H 1.08999 * 109.47398 * 59.99831 * 1 2 3 32 32 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47438 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.46721 * 59.99665 * 5 3 2 35 35 H 1.09000 * 109.47134 * 300.00108 * 5 3 2 36 36 H 1.09004 * 110.37123 * 273.66199 * 9 8 6 37 37 H 1.08997 * 110.37641 * 36.00441 * 9 8 6 38 38 H 1.09001 * 111.16159 * 279.24023 * 10 9 8 39 39 H 1.08998 * 110.86474 * 155.48071 * 10 9 8 40 40 H 1.09006 * 110.48759 * 354.15823 * 13 11 10 41 41 H 1.08998 * 109.18696 * 233.00018 * 13 11 10 42 42 H 1.08996 * 109.47192 * 60.91763 * 15 14 13 43 43 H 1.09000 * 109.46965 * 180.92312 * 15 14 13 44 44 H 0.97001 * 119.99933 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99871 * 179.97438 * 22 21 19 46 46 H 1.09001 * 110.59002 * 280.54004 * 27 14 13 47 47 H 1.09003 * 110.71786 * 157.68196 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2540 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7142 1.9385 0.1238 7 8 4.4584 1.0531 -0.2409 8 7 4.2217 3.0755 0.6400 9 6 3.4348 4.2279 1.1137 10 6 4.3491 4.9268 2.1533 11 6 5.7477 4.7593 1.5080 12 1 6.0037 5.5619 0.8162 13 6 6.7950 4.5491 2.6419 14 7 7.3226 3.1749 2.5027 15 6 7.6731 2.6103 3.8128 16 6 8.7103 3.4811 4.4739 17 8 9.1968 4.4119 3.8671 18 7 9.0972 3.2258 5.7394 19 6 10.0404 4.0183 6.3409 20 1 10.4730 4.8475 5.8009 21 6 10.4396 3.7547 7.6455 22 7 11.3441 4.5141 8.2220 23 14 9.6919 2.3200 8.5793 24 1 10.5061 1.1001 8.3472 25 1 9.6701 2.6318 10.0310 26 1 8.3050 2.0877 8.1020 27 6 6.2404 2.3905 1.8578 28 6 5.6493 3.3712 0.8159 29 1 6.1920 3.3430 -0.1290 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9876 3.4637 -1.3071 34 1 0.6635 2.2778 -1.3968 35 1 2.2354 1.9150 -2.1491 36 1 3.2126 4.9015 0.2860 37 1 2.5129 3.8894 1.5866 38 1 4.3030 4.4236 3.1191 39 1 4.0894 5.9807 2.2523 40 1 6.3283 4.6701 3.6196 41 1 7.6029 5.2709 2.5217 42 1 6.7825 2.5664 4.4395 43 1 8.0738 1.6053 3.6798 44 1 8.7084 2.4812 6.2245 45 1 11.6225 4.3303 9.1328 46 1 5.4840 2.1070 2.5897 47 1 6.6457 1.5066 1.3651 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186925017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:04 Heat of formation + Delta-G solvation = -67.490638 kcal Electronic energy + Delta-G solvation = -28042.891927 eV Core-core repulsion = 24158.496920 eV Total energy + Delta-G solvation = -3884.395007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89927 -40.49959 -39.42690 -36.96663 -35.92284 -34.46803 -33.78115 -32.81326 -31.34508 -29.65884 -28.64062 -28.21121 -26.08417 -25.60863 -23.80645 -22.50216 -21.43904 -21.28102 -20.47187 -19.95488 -18.51597 -17.76635 -17.71473 -17.28644 -16.86219 -16.60608 -16.44340 -15.89704 -15.69621 -15.31048 -15.12318 -14.97237 -14.91036 -14.49250 -14.33167 -14.28831 -14.22227 -13.86354 -13.76366 -13.37810 -13.33372 -13.20076 -13.15131 -13.00675 -12.83809 -12.63226 -12.47969 -12.41534 -11.99774 -11.90151 -11.84019 -11.71188 -11.50251 -11.00100 -10.79641 -10.42270 -10.26519 -9.83493 -9.37896 -8.73926 -8.42897 -6.03524 0.42957 1.28151 1.33640 1.42011 1.46222 1.64103 1.81500 1.90492 2.20809 2.62844 3.04041 3.12901 3.24365 3.41236 3.57462 3.65664 3.79954 3.90522 4.03295 4.07841 4.13906 4.19290 4.28632 4.31375 4.35694 4.37880 4.44329 4.52441 4.60434 4.62851 4.66126 4.67835 4.83592 4.92021 4.92818 5.03759 5.10684 5.12325 5.15994 5.32856 5.50099 5.81100 5.86049 5.95820 6.37397 6.57061 6.85593 6.99437 7.36350 7.92087 8.74464 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002392 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.102502 B =11704.688755 C =12491.928957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.276 6.276 3 C -0.071 4.071 4 H 0.133 0.867 5 C -0.137 4.137 6 C 0.541 3.459 7 O -0.564 6.564 8 N -0.606 5.606 9 C 0.097 3.903 10 C -0.123 4.123 11 C -0.094 4.094 12 H 0.120 0.880 13 C 0.053 3.947 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.453 3.547 17 O -0.602 6.602 18 N -0.591 5.591 19 C -0.326 4.326 20 H 0.058 0.942 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.234 1.234 27 C 0.042 3.958 28 C 0.141 3.859 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.050 0.950 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.658 -4.385 -15.229 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.051 6.051 3 C -0.202 4.202 4 H 0.150 0.850 5 C -0.196 4.196 6 C 0.329 3.671 7 O -0.442 6.442 8 N -0.340 5.340 9 C -0.024 4.024 10 C -0.161 4.161 11 C -0.113 4.113 12 H 0.138 0.862 13 C -0.075 4.075 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.241 3.759 17 O -0.486 6.486 18 N -0.233 5.233 19 C -0.455 4.455 20 H 0.076 0.924 21 C -0.212 4.212 22 N -0.573 5.573 23 Si 0.782 3.218 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.157 1.157 27 C -0.087 4.087 28 C 0.037 3.963 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.701 -5.133 -15.984 33.250 hybrid contribution -0.675 0.287 1.485 1.657 sum -29.376 -4.846 -14.499 33.116 Atomic orbital electron populations 1.23570 0.90894 1.07679 1.06429 1.87856 1.10200 1.08900 1.98096 1.23268 0.94481 0.96874 1.05592 0.84966 1.21984 1.03075 1.01613 0.92885 1.19930 0.90004 0.80628 0.76552 1.90752 1.61631 1.41782 1.50013 1.48500 1.07163 1.16713 1.61610 1.22782 0.95136 0.86519 0.97961 1.22990 0.92029 1.03335 0.97739 1.23402 0.95694 0.95965 0.96273 0.86229 1.23157 0.96669 0.90698 0.97007 1.64406 1.37085 1.02811 1.19571 1.22026 0.97259 0.98708 0.90535 1.20636 0.86204 0.87230 0.81869 1.90535 1.59550 1.34053 1.64423 1.42035 1.38445 1.29684 1.13110 1.18990 1.17460 1.11311 0.97713 0.92383 1.26072 0.96769 1.01343 0.97046 1.69797 1.31663 1.40709 1.15081 0.85400 0.80172 0.77893 0.78301 1.18392 1.19749 1.15724 1.23385 0.92091 0.96969 0.96224 1.22310 0.81538 0.94572 0.97902 0.89811 0.88972 0.88689 0.87162 0.89390 0.88842 0.92507 0.88067 0.87958 0.91232 0.86759 0.93856 0.91916 0.90530 0.87010 0.77643 0.91104 0.93214 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.45 113.37 1.18 0.30 16 2 S -0.28 -5.05 21.10 -56.49 -1.19 -6.24 16 3 C -0.07 -0.97 2.68 29.85 0.08 -0.89 16 4 H 0.13 1.06 6.68 -2.39 -0.02 1.05 16 5 C -0.14 -1.21 9.08 71.98 0.65 -0.56 16 6 C 0.54 11.73 6.77 87.66 0.59 12.32 16 7 O -0.56 -17.91 16.11 -3.02 -0.05 -17.96 16 8 N -0.61 -10.82 2.97 -782.75 -2.32 -13.14 16 9 C 0.10 0.88 6.71 86.93 0.58 1.46 16 10 C -0.12 -1.54 6.40 31.97 0.20 -1.33 16 11 C -0.09 -1.86 4.14 -8.34 -0.03 -1.90 16 12 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 13 C 0.05 1.60 4.98 87.08 0.43 2.03 16 14 N -0.51 -17.02 5.12 -884.54 -4.53 -21.55 16 15 C 0.05 1.57 5.30 85.56 0.45 2.03 16 16 C 0.45 21.03 7.40 87.66 0.65 21.68 16 17 O -0.60 -33.43 14.08 -3.08 -0.04 -33.47 16 18 N -0.59 -28.45 5.09 -306.98 -1.56 -30.01 16 19 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 20 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 23 Si 0.96 39.30 27.74 68.60 1.90 41.20 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 27 C 0.04 1.16 5.56 86.63 0.48 1.64 16 28 C 0.14 3.23 3.80 46.38 0.18 3.41 16 29 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.41 7.14 -2.39 -0.02 0.40 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.40 6.92 -2.38 -0.02 0.38 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 0.46 6.77 -2.39 -0.02 0.44 16 38 H 0.07 1.04 7.51 -2.39 -0.02 1.02 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 1.32 6.95 -2.38 -0.02 1.30 16 41 H 0.06 2.37 6.96 -2.39 -0.02 2.36 16 42 H 0.08 2.19 7.99 -2.39 -0.02 2.17 16 43 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.39 15.68 5.76 -92.71 -0.53 15.15 16 45 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.05 1.31 7.88 -2.39 -0.02 1.29 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -84.73 383.50 -0.33 -85.06 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.39 Total: 30.51 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.78 Total: 21.58 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -8.11 Total: -120.67 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.90 Total: 41.20 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -1.19 Total: -6.24 kcal Total: -84.73 -0.33 -85.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186925017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.564 kcal (2) G-P(sol) polarization free energy of solvation -84.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds